SRR1779838_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779838_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	119905
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	26068	21.740544597806597	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	3327	2.774696634835912	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	1899	1.5837538050957007	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	704	0.587131479087611	RNA PCR Primer, Index 48 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	663	0.5529377423793838	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT	290	0.24185813769233977	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	286	0.23852216337934198	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT	264	0.22017430465785412	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT	229	0.19098452941912347	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	208	0.1734706642758851	RNA PCR Primer, Index 48 (95% over 21bp)
CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	157	0.13093699178516324	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCATCTCGTATGCCGTC	141	0.1175930945331721	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACCGTG	15	0.0022219757	69.98457	7
GAATCGG	20	7.9083635E-5	69.98457	10
TGTAGTC	15	0.0022219757	69.98457	5
CTCGAAA	25	2.3751566E-4	56.03439	57
TCTCGTA	3590	0.0	55.753727	38
ATCTCGT	3600	0.0	55.696053	37
AATCTCG	3575	0.0	55.69401	36
TATGCCG	3710	0.0	55.459473	43
CGTATGC	3720	0.0	55.404453	41
TCGTATG	3715	0.0	55.38483	40
CTCGTAT	3705	0.0	55.345417	39
GTATGCC	3720	0.0	55.310387	42
CGTCAAT	3600	0.0	55.30725	32
GCCGTCT	3715	0.0	55.290638	46
GTCAATC	3595	0.0	55.28684	33
ATGCCGT	3710	0.0	55.270832	44
CCGTCTT	3725	0.0	55.236145	47
CGTCTTC	3700	0.0	55.231064	48
CTTGAAA	3595	0.0	55.138153	57
GCTTGAA	3625	0.0	55.06828	56