##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779838_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 119905 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.61067511780159 34.0 34.0 34.0 34.0 34.0 2 33.695967641049165 34.0 34.0 34.0 34.0 34.0 3 33.78549685167424 34.0 34.0 34.0 34.0 34.0 4 33.5985238313665 34.0 34.0 34.0 34.0 34.0 5 33.659380342771364 34.0 34.0 34.0 34.0 34.0 6 37.35855885909678 38.0 38.0 38.0 37.0 38.0 7 37.40578791543305 38.0 38.0 38.0 37.0 38.0 8 37.32853509027981 38.0 38.0 38.0 37.0 38.0 9 37.24580292731746 38.0 38.0 38.0 36.0 38.0 10-11 37.185476001834786 38.0 38.0 38.0 36.5 38.0 12-13 37.336820816479715 38.0 38.0 38.0 36.5 38.0 14-15 37.35543138317835 38.0 38.0 38.0 37.0 38.0 16-17 37.2352070389058 38.0 38.0 38.0 36.0 38.0 18-19 37.08404570284809 38.0 38.0 38.0 36.0 38.0 20-21 37.13666235769985 38.0 38.0 38.0 36.0 38.0 22-23 37.1464034026938 38.0 38.0 38.0 36.0 38.0 24-25 37.30017930861932 38.0 38.0 38.0 36.0 38.0 26-27 37.19077603102456 38.0 38.0 38.0 36.0 38.0 28-29 36.75862557858304 38.0 37.0 38.0 34.5 38.0 30-31 37.05756640673867 38.0 38.0 38.0 36.0 38.0 32-33 37.01751803511113 38.0 38.0 38.0 36.0 38.0 34-35 36.97711104624494 38.0 38.0 38.0 35.5 38.0 36-37 36.873195446395066 38.0 37.5 38.0 35.0 38.0 38-39 35.927496768274885 38.0 37.0 38.0 32.5 38.0 40-41 36.65780409490847 38.0 37.0 38.0 35.0 38.0 42-43 37.17505942204245 38.0 38.0 38.0 36.5 38.0 44-45 36.96733247153997 38.0 38.0 38.0 35.5 38.0 46-47 37.118151870230605 38.0 38.0 38.0 36.0 38.0 48-49 36.73817605604437 38.0 37.0 38.0 34.5 38.0 50-51 36.85282932321421 38.0 37.5 38.0 34.5 38.0 52-53 36.790054626579376 38.0 37.0 38.0 35.0 38.0 54-55 36.79737292022851 38.0 37.0 38.0 35.0 38.0 56-57 36.687219048413326 38.0 37.0 38.0 34.5 38.0 58-59 36.7238230265627 38.0 37.0 38.0 34.5 38.0 60-61 36.359768149785246 38.0 37.0 38.0 34.0 38.0 62-63 36.244243359326134 38.0 37.0 38.0 34.0 38.0 64-65 36.69487093949377 38.0 37.0 38.0 34.5 38.0 66-67 36.381773070347364 38.0 37.0 38.0 34.0 38.0 68-69 36.361573745882154 38.0 37.0 38.0 34.0 38.0 70-71 34.604157457987576 38.0 34.0 38.0 26.5 38.0 72-73 31.481301863975645 38.0 24.0 38.0 11.0 38.0 74-75 30.9825611942788 38.0 23.5 38.0 11.0 38.0 76 30.895292106250782 37.0 24.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 2.0 22 2.0 23 12.0 24 18.0 25 58.0 26 110.0 27 233.0 28 399.0 29 730.0 30 1189.0 31 1921.0 32 2912.0 33 4878.0 34 8631.0 35 19317.0 36 22394.0 37 57099.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.050693320429176 14.858415792020557 12.208613526005774 44.882277361544496 2 13.717526375046912 14.011092114590717 51.35899253575747 20.912388974604895 3 13.226304157457989 16.865018139360327 49.13056169467495 20.778116008506732 4 9.739377006797048 36.38797381260164 32.42400233518202 21.44864684541929 5 9.683499437054335 29.170593386430927 50.73182936491389 10.414077811600851 6 20.280221842291816 52.46320003335975 16.355448063049916 10.901130061298527 7 19.075101121721364 25.25249155581502 18.35870063800509 37.31370668445853 8 17.0551686752012 51.19219382010759 14.724990617572246 17.02764688711897 9 17.370418247779494 15.260414494808389 15.388015512280557 51.98115174513156 10-11 17.788666027271592 32.76844168299904 30.823985655310455 18.618906634418916 12-13 17.96880864017347 17.158166882115008 33.22338517993411 31.649639297777405 14-15 16.490555022726326 16.948000500396144 19.697677327884573 46.86376714899295 16-17 30.46620241024144 30.63300112589133 17.47800341937367 21.422793044493556 18-19 31.062507818689795 22.042450273132896 17.960051707601853 28.934990200575456 20-21 17.76489721029148 18.517993411450732 17.626871273091197 46.09023810516659 22-23 16.849589258162712 32.10374880113423 18.057628956257037 32.98903298444602 24-25 30.386392447291165 32.1857485988791 17.84844542300507 19.57941353082466 26-27 31.014553187940454 33.64788791126308 18.734414745006465 16.60314415579 28-29 17.36499728952087 21.101288520078395 31.444476877528043 30.08923731287269 30-31 16.901296860014178 17.608106417580586 48.03969809432467 17.450898628080562 32-33 28.278220257704017 18.20357783245069 23.070347358325343 30.447854551519953 34-35 19.227304949751886 18.630165547725284 32.63208373295526 29.51044576956757 36-37 16.30415745798757 44.17080188482549 19.908677703181684 19.616362954005254 38-39 16.154455610691798 22.792210499979152 32.19799007547642 28.855343813852635 40-41 15.980150952837663 17.669821942371044 34.43142487802844 31.918602226762854 42-43 29.663190288938278 17.712846473651947 32.85197803251754 19.771985204892225 44-45 17.148158959176012 31.11296443017389 34.43684583628706 17.302030774363036 46-47 29.34364705391769 18.61223468579292 22.803886410074643 29.240231850214755 48-49 28.653517367916265 17.016804970601726 20.445352570785204 33.884325090696805 50-51 17.800660627596216 17.577949051599017 34.022738268021286 30.598652052783475 52-53 14.93173598741923 17.64769679348937 47.35349203899371 20.067075180097692 54-55 14.358967940052402 17.952569301890886 36.43877568050201 31.2496870775547 56-57 28.4227699266065 17.742117187597792 23.222638076998503 30.61247480879721 58-59 15.954096254364487 18.143743299446434 45.371455746102725 20.530704700086353 60-61 27.998982158574687 30.830583631941867 23.253505087121386 17.91692912236206 62-63 15.211696491886705 47.65277603971134 18.89458974679848 18.24093772160347 64-65 14.299834843100944 49.24636738234656 18.23023539028744 18.22356238426505 66-67 14.416109398400573 49.16211604807456 17.823963022139157 18.59781153138571 68-69 14.259202882534227 49.502270746364516 17.520403354615933 18.71812301648533 70-71 14.652364488670724 46.62332083560975 18.183145172389345 20.541169503330178 72-73 15.655630354446643 40.50318242865604 19.577567006181333 24.263620210715985 74-75 16.223948884134312 37.72839691536437 20.28744333087263 25.760210869628686 76 16.341357623075258 38.22965150226048 20.114108402982833 25.314882471681432 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 2.5 16 6.0 17 7.0 18 13.0 19 21.5 20 39.0 21 54.0 22 63.0 23 98.5 24 160.5 25 196.0 26 244.5 27 316.0 28 447.0 29 555.0 30 598.5 31 759.0 32 1068.5 33 1261.0 34 1486.0 35 1942.5 36 2368.5 37 2563.0 38 2885.5 39 7554.0 40 13982.5 41 14992.5 42 13920.0 43 12052.5 44 8733.0 45 6696.0 46 6111.0 47 5750.0 48 5299.0 49 4774.5 50 4340.0 51 4142.5 52 3561.0 53 2977.0 54 2777.0 55 2664.0 56 2378.0 57 1957.5 58 1710.0 59 1587.5 60 1233.0 61 990.0 62 979.0 63 910.5 64 736.5 65 648.5 66 615.5 67 565.0 68 521.0 69 439.5 70 348.0 71 294.0 72 294.0 73 282.5 74 248.5 75 226.0 76 238.0 77 206.5 78 140.0 79 117.0 80 108.0 81 94.5 82 72.5 83 55.0 84 54.5 85 38.5 86 22.5 87 22.0 88 19.5 89 11.5 90 5.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03919769817772403 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 8.339935782494475E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 4.169967891247237E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0158458779867395 52-53 0.032942746340853174 54-55 0.055877569742712976 56-57 0.059630540844835496 58-59 0.03794670781034986 60-61 0.03627872065385097 62-63 0.033359743129977894 64-65 0.0158458779867395 66-67 0.04128268212334765 68-69 0.008756932571619198 70-71 0.013760894041115882 72-73 0.02335182019098453 74-75 0.017096868354113674 76 0.0158458779867395 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 119905.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.110837746549354 #Duplication Level Percentage of deduplicated Percentage of total 1 39.136994568497286 8.653517367916267 2 15.442063971031986 6.828739418706475 3 13.322269161134582 8.836995955131146 4 10.040736270368136 8.880363621200118 5 7.219372359686179 7.9813185438472125 6 4.72238986119493 6.264959759809849 7 2.957151478575739 4.576956757432968 8 1.957604103802052 3.462741336891706 9 1.2484912492456246 2.484466869605104 >10 3.8586300543150274 12.59080105083191 >50 0.03394689197344598 0.5245819607189024 >100 0.04149064574532287 1.6754930987031398 >500 0.0075437537718768865 1.1400692214669947 >1k 0.0075437537718768865 4.358450439931612 >5k 0.0 0.0 >10k+ 0.0037718768859384432 21.740544597806597 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 26068 21.740544597806597 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 3327 2.774696634835912 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 1899 1.5837538050957007 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 704 0.587131479087611 RNA PCR Primer, Index 48 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 663 0.5529377423793838 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT 290 0.24185813769233977 No Hit CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 286 0.23852216337934198 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT 264 0.22017430465785412 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT 229 0.19098452941912347 No Hit CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 208 0.1734706642758851 RNA PCR Primer, Index 48 (95% over 21bp) CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 157 0.13093699178516324 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCATCTCGTATGCCGTC 141 0.1175930945331721 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004169967891247238 0.0 2 0.0 0.0 0.0 0.004169967891247238 0.0 3 0.0 0.0 0.0 0.00667194862599558 0.0 4 0.0 0.0 0.0 0.007505942204245027 0.0 5 0.0 0.0 0.0 0.010841916517242818 0.0 6 0.0 0.0 0.0 0.0158458779867395 0.0 7 0.0 0.0 0.0 0.0158458779867395 0.0 8 0.0 0.0 0.0 0.0158458779867395 0.0 9 0.0 0.0 0.0 0.0158458779867395 0.0 10 0.0 0.0 0.0 0.01667987156498895 0.0 11 0.0 0.0 0.0 0.01667987156498895 0.0 12 0.0 0.0 0.0 0.01667987156498895 0.0 13 0.0 0.0 0.0 0.024185813769233976 0.0 14 0.0 0.0 0.0 0.025019807347483426 0.0 15 0.0 0.0 0.0 0.028355781660481215 0.0 16 0.0 0.0 0.0 0.028355781660481215 0.0 17 0.0 0.0 0.0 0.028355781660481215 0.0 18 0.0 0.0 0.0 0.02918977523873066 0.0 19 0.0 0.0 0.0 0.02918977523873066 0.0 20 0.0 0.0 0.0 0.02918977523873066 0.0 21 0.0 0.0 0.0 0.03586172386472624 0.0 22 0.0 0.0 0.0 0.04420165964722072 0.0 23 0.0 0.0 0.0 0.045035653225470165 0.0 24 0.0 0.0 0.0 0.04586964680371961 0.0 25 0.0 0.0 0.0 0.04670364038196906 0.0 26 0.0 0.0 0.0 0.049205621116717405 0.0 27 0.0 0.0 0.0 0.063383511946958 0.0 28 0.0 0.0 0.0 0.08756932571619198 0.0 29 0.0 0.0 0.0 0.10925315875067762 0.0 30 0.0 0.0 0.0 0.13927692756765772 0.0 31 0.0 0.0 0.0 0.16763270922813894 0.0 32 0.0 0.0 0.0 0.214336349610108 0.0 33 0.0 0.0 0.0 0.25186606063133316 0.0 34 0.0 0.0 0.0 0.31107960468704393 0.0 35 0.0 0.0 0.0 0.4003169175597348 0.0 36 0.0 0.0 0.0 0.5646136524748759 0.0 37 0.0 0.0 0.0 0.8440015011884409 0.0 38 0.0 0.0 0.0 1.2426504315916767 0.0 39 0.0 0.0 0.0 1.619615528960427 0.0 40 0.0 0.0 0.0 2.063300112589133 0.0 41 0.0 0.0 0.0 2.5361744714565697 0.0 42 0.0 0.0 0.0 3.0941161753054502 0.0 43 0.0 0.0 0.0 3.6837496351278096 0.0 44 0.0 0.0 0.0 4.1682999040907385 0.0 45 0.0 0.0 0.0 4.734581543722113 0.0 46 0.0 0.0 0.0 5.344230849422459 0.0 47 0.0 0.0 0.0 5.870480797297861 0.0 48 0.0 0.0 0.0 6.375880905717026 0.0 49 0.0 0.0 0.0 6.910470789374922 0.0 50 0.0 0.0 0.0 7.3716692381468665 0.0 51 0.0 0.0 0.0 7.943788832825987 0.0 52 0.0 0.0 0.0 8.389975397189442 0.0 53 0.0 0.0 0.0 8.909553396438847 0.0 54 0.0 0.0 0.0 9.484174971852717 0.0 55 0.0 0.0 0.0 9.939535465576915 0.0 56 0.0 0.0 0.0 10.425753721696342 0.0 57 0.0 0.0 0.0 10.864434343855553 0.0 58 0.0 0.0 0.0 11.349818606396731 0.0 59 0.0 0.0 0.0 11.790167215712438 0.0 60 0.0 0.0 0.0 12.10625078186898 0.0 61 0.0 0.0 0.0 12.521579583837205 0.0 62 0.0 0.0 0.0 12.977774071139653 0.0 63 0.0 0.0 0.0 13.408114757516367 0.0 64 0.0 0.0 0.0 13.815937617280348 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGTG 15 0.0022219757 69.98457 7 GAATCGG 20 7.9083635E-5 69.98457 10 TGTAGTC 15 0.0022219757 69.98457 5 CTCGAAA 25 2.3751566E-4 56.03439 57 TCTCGTA 3590 0.0 55.753727 38 ATCTCGT 3600 0.0 55.696053 37 AATCTCG 3575 0.0 55.69401 36 TATGCCG 3710 0.0 55.459473 43 CGTATGC 3720 0.0 55.404453 41 TCGTATG 3715 0.0 55.38483 40 CTCGTAT 3705 0.0 55.345417 39 GTATGCC 3720 0.0 55.310387 42 CGTCAAT 3600 0.0 55.30725 32 GCCGTCT 3715 0.0 55.290638 46 GTCAATC 3595 0.0 55.28684 33 ATGCCGT 3710 0.0 55.270832 44 CCGTCTT 3725 0.0 55.236145 47 CGTCTTC 3700 0.0 55.231064 48 CTTGAAA 3595 0.0 55.138153 57 GCTTGAA 3625 0.0 55.06828 56 >>END_MODULE