##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779837_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 586803 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.903531508870948 34.0 31.0 34.0 12.0 34.0 2 30.704057409386113 34.0 32.0 34.0 21.0 34.0 3 30.42149068767542 34.0 32.0 34.0 21.0 34.0 4 30.627217311431604 34.0 32.0 34.0 21.0 34.0 5 31.378726761792286 34.0 33.0 34.0 23.0 34.0 6 33.770803830246265 37.0 34.0 38.0 21.0 38.0 7 33.95373234288168 38.0 34.0 38.0 22.0 38.0 8 33.142177187233195 37.0 34.0 38.0 21.0 38.0 9 34.172921747162164 38.0 34.0 38.0 23.0 38.0 10-11 32.73661859261115 37.0 30.5 38.0 17.0 38.0 12-13 33.71691606893625 37.0 34.0 38.0 21.0 38.0 14-15 32.41060202487036 37.0 31.0 38.0 16.0 38.0 16-17 33.150263376294944 37.0 32.5 38.0 17.0 38.0 18-19 34.21230293641989 38.0 34.5 38.0 23.0 38.0 20-21 32.650524963232975 37.0 30.5 38.0 16.5 38.0 22-23 33.693284628742525 38.0 34.0 38.0 17.0 38.0 24-25 34.02162139593697 38.0 34.5 38.0 22.5 38.0 26-27 32.841116183795926 37.0 32.5 38.0 16.0 38.0 28-29 34.26899572769737 38.0 35.0 38.0 24.0 38.0 30-31 34.74944572539677 38.0 36.0 38.0 26.0 38.0 32-33 34.84011073563019 38.0 36.0 38.0 26.0 38.0 34-35 34.711114292190054 38.0 36.0 38.0 25.0 38.0 36-37 34.13542875547671 38.0 34.5 38.0 22.5 38.0 38-39 34.09034377806521 38.0 35.0 38.0 22.5 38.0 40-41 34.070626769120125 38.0 34.5 38.0 22.5 38.0 42-43 34.51173988544708 38.0 35.0 38.0 24.5 38.0 44-45 34.56655640819832 38.0 36.0 38.0 25.0 38.0 46-47 34.46146918130957 38.0 36.0 38.0 24.0 38.0 48-49 34.15101405412038 38.0 35.0 38.0 22.5 38.0 50-51 33.44028404762757 37.5 33.0 38.0 17.0 38.0 52-53 34.044370086724165 37.5 34.0 38.0 23.0 38.0 54-55 34.23185123457106 38.0 35.0 38.0 24.0 38.0 56-57 34.30639243493984 38.0 35.5 38.0 23.5 38.0 58-59 34.63718147316902 38.0 36.0 38.0 25.0 38.0 60-61 34.419095505646695 38.0 35.5 38.0 24.0 38.0 62-63 34.469479535721526 38.0 36.0 38.0 24.0 38.0 64-65 34.47081303265321 38.0 35.5 38.0 24.5 38.0 66-67 34.23510275169009 38.0 35.0 38.0 23.0 38.0 68-69 33.49720945530272 37.0 34.0 38.0 21.0 38.0 70-71 33.48018585453721 37.0 34.0 38.0 21.5 38.0 72-73 33.7336005439645 37.0 34.0 38.0 22.0 38.0 74-75 33.74996975134756 37.5 34.0 38.0 22.0 38.0 76 32.47932270284917 37.0 31.0 38.0 18.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 65.0 13 702.0 14 2201.0 15 3703.0 16 4994.0 17 5996.0 18 6305.0 19 5872.0 20 5156.0 21 4661.0 22 4419.0 23 4507.0 24 5205.0 25 6099.0 26 7242.0 27 8625.0 28 10579.0 29 12760.0 30 15608.0 31 19111.0 32 24366.0 33 31206.0 34 42478.0 35 61899.0 36 105482.0 37 187560.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 43.52675528289025 18.8159509202454 9.515678254942058 28.141615541922288 2 22.972104777923764 21.216319616634543 28.395219520009267 27.41635608543242 3 21.15019861861647 20.110156219378563 29.567333500339977 29.172311661664992 4 14.874327500029821 19.022568050947253 32.0877705124207 34.01533393660223 5 16.23918078128435 31.48364953826071 33.32004096775238 18.95712871270256 6 29.796878967540515 35.04131780713131 17.664150731177774 17.497652494150408 7 29.309119540265144 28.093487600826894 20.12652252233828 22.47087033656968 8 25.75168076893581 33.604642245456176 18.165086019581278 22.47859096602674 9 25.11150385768409 17.568610875822966 19.37363549444313 37.94624977204981 10-11 24.895383406713357 24.554458145267734 24.20978364325635 26.340374804762558 12-13 25.564989924207886 22.057080533910472 25.155482466417578 27.22244707546406 14-15 24.798760739364162 23.55950010352734 22.752412868746926 28.889326288361566 16-17 25.426273494995318 25.4272959890116 23.298207823612966 25.84822269238012 18-19 23.384365262159598 25.3377062813837 25.272521065901827 26.005407390554875 20-21 24.509503189315666 24.8308205649937 25.378619400377982 25.281056845312648 22-23 25.38552777555288 24.898047522720958 24.1663584943924 25.55006620733376 24-25 23.73277367206133 26.416727805059274 24.091423838604868 25.759074684274523 26-27 24.14346954373761 26.356402218471185 24.585357374439866 24.914770863351343 28-29 23.439381351057712 25.901791610745406 25.655525020770753 25.003302017426133 30-31 23.800467449384502 25.57483237517286 25.161234250423696 25.463465925018937 32-33 23.169419301075404 26.212271100193167 25.338807075305702 25.279502523425723 34-35 23.32251165247919 26.2696728784819 25.416890343141013 24.9909251258979 36-37 24.327606587107535 25.40636774182002 25.06820023811492 25.197825432957526 38-39 24.072866841701156 25.133896272890187 25.873318999934387 24.91991788547427 40-41 23.19068296307405 25.288686357780215 25.958680699936604 25.561949979209132 42-43 22.222212754644698 24.62729934321521 26.86478140688959 26.285706495250494 44-45 21.81555881636152 23.74093975973427 28.138681964050466 26.30481945985374 46-47 21.64778822745473 24.038119876171756 28.17058508249678 26.143506813876737 48-49 21.325153374233132 24.552488070892977 28.37252897068848 25.749829584185413 50-51 22.107161085874917 24.928445379475946 27.29036562515178 25.67402790949736 52-53 19.78387010731503 25.821309783622976 27.775443751432725 26.61937635762927 54-55 19.81651407418517 25.45581748893903 27.652245938631236 27.07542249824456 56-57 19.873433686478233 25.783668071065296 27.28666434872718 27.056233893729292 58-59 20.023894882967056 25.283922169491756 27.354954055184912 27.33722889235628 60-61 20.074353878095096 24.818802905971836 27.604942606715372 27.5019006092177 62-63 20.504440721355174 25.204566333008938 26.76329276378021 27.52770018185568 64-65 21.171011083696612 24.369729278260017 25.960054374459347 28.499205263584027 66-67 21.000408215094414 25.380837411933342 25.060657013246114 28.55809735972613 68-69 21.168832939388103 25.66901102421783 24.63748234063112 28.524673695762942 70-71 21.180299931833673 25.151158827539195 24.716257668711656 28.952283571915473 72-73 21.079607619917585 24.898854421944925 24.195521986168533 29.826015971968957 74-75 20.763326774723247 24.570501933923637 24.97927178124635 29.686899510106763 76 19.72518183739272 24.438297988370586 24.69341567993892 31.14310449429777 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 2.0 10 3.5 11 3.5 12 3.0 13 10.5 14 18.0 15 23.0 16 63.0 17 98.0 18 112.0 19 174.5 20 294.5 21 366.0 22 455.5 23 745.5 24 1155.0 25 1364.0 26 1642.5 27 2224.0 28 3029.5 29 3532.0 30 3991.5 31 5142.0 32 6614.5 33 7396.0 34 8363.0 35 10707.0 36 13361.5 37 14639.0 38 16246.0 39 19699.0 40 22804.0 41 25712.0 42 27361.0 43 28377.5 44 30615.5 45 32170.5 46 32504.0 47 32825.5 48 32699.5 49 31409.5 50 30567.0 51 29782.5 52 27475.0 53 24840.5 54 23729.0 55 22715.5 56 20347.5 57 17842.5 58 16692.0 59 15395.0 60 13189.5 61 11413.5 62 10546.0 63 9884.0 64 8674.5 65 7761.5 66 6826.5 67 6257.0 68 5933.0 69 5221.0 70 4505.5 71 4178.0 72 3922.0 73 3429.5 74 2990.0 75 2787.0 76 2579.5 77 2262.0 78 2003.5 79 1855.0 80 1705.0 81 1378.5 82 1082.5 83 963.0 84 826.0 85 593.0 86 444.5 87 392.0 88 342.0 89 257.5 90 171.0 91 99.5 92 80.0 93 67.0 94 43.5 95 32.5 96 32.0 97 22.0 98 15.0 99 21.5 100 25.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 5.112448300366563E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.001704149433455521 7 0.005112448300366563 8 0.0030674689802199376 9 0.008861577053968709 10-11 0.0029822615085471614 12-13 8.520747167277603E-5 14-15 2.5562241501832813E-4 16-17 4.260373583638802E-4 18-19 0.0023006017351649534 20-21 0.0 22-23 0.001704149433455521 24-25 0.003323091395238266 26-27 4.260373583638802E-4 28-29 0.006901805205494859 30-31 2.5562241501832813E-4 32-33 2.5562241501832813E-4 34-35 0.0030674689802199376 36-37 0.01900126618302906 38-39 0.010480519015751453 40-41 0.0011929046034188646 42-43 8.520747167277604E-4 44-45 0.006134937960439875 46-47 0.003834336225274922 48-49 5.112448300366563E-4 50-51 0.0023006017351649534 52-53 0.012355083392552525 54-55 0.009372821884005364 56-57 0.012781120750916407 58-59 0.011332593732479215 60-61 0.025391826558487263 62-63 0.012610705807570856 64-65 0.02223915010659455 66-67 0.017467531692919088 68-69 6.816597733822083E-4 70-71 5.112448300366563E-4 72-73 0.004260373583638802 74-75 0.007242635092185964 76 0.0025562241501832813 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 586803.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.485152535409966 #Duplication Level Percentage of deduplicated Percentage of total 1 75.111554863772 43.9291074337952 2 9.907529156364534 11.588867079180028 3 6.120591263426334 10.738911409451601 4 3.636820566586381 8.508000223228825 5 1.9858898346475224 5.80725349489402 6 1.0860477782006304 3.811060198128418 7 0.557870441394735 2.283899650197729 8 0.3287293818234566 1.5380630431052706 9 0.23173998090468556 1.2198013318587175 >10 1.0179084013866464 10.021131965735828 >50 0.01531833149308617 0.5539041704243172 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007839087393895395 0.0 2 0.0 0.0 0.0 0.008861577053968709 0.0 3 0.0 0.0 0.0 0.009372821884005365 0.0 4 0.0 0.0 0.0 0.030845104745544926 0.0 5 0.0 0.0 0.0 0.0366392128192937 0.0 6 0.0 0.0 0.0 0.038343362252749216 0.0 7 0.0 0.0 1.704149433455521E-4 0.03936585191282253 0.0 8 0.0 0.0 1.704149433455521E-4 0.040729171459586946 0.0 9 0.0 0.0 1.704149433455521E-4 0.04379664043980688 0.0 10 0.0 0.0 1.704149433455521E-4 0.04720493930671793 0.0 11 0.0 0.0 1.704149433455521E-4 0.04737535425006348 0.0 12 0.0 0.0 1.704149433455521E-4 0.04754576919340903 0.0 13 0.0 0.0 1.704149433455521E-4 0.04771618413675458 0.0 14 0.0 0.0 1.704149433455521E-4 0.05061323817362897 0.0 15 0.0 0.0 1.704149433455521E-4 0.05129489794701118 0.0 16 0.0 0.0 1.704149433455521E-4 0.05146531289035673 0.0 17 0.0 0.0 1.704149433455521E-4 0.05197655772039338 0.0 18 0.0 0.0 1.704149433455521E-4 0.05351029221050335 0.0 19 0.0 0.0 1.704149433455521E-4 0.05504402670061332 0.0 20 0.0 0.0 1.704149433455521E-4 0.056577761190723296 0.0 21 0.0 0.0 1.704149433455521E-4 0.05879315545421547 0.0 22 0.0 0.0 1.704149433455521E-4 0.0647576784713098 6.816597733822084E-4 23 0.0 0.0 1.704149433455521E-4 0.06595058307472866 6.816597733822084E-4 24 0.0 0.0 1.704149433455521E-4 0.06850680722491194 6.816597733822084E-4 25 0.0 0.0 1.704149433455521E-4 0.07123344631844077 6.816597733822084E-4 26 0.0 0.0 1.704149433455521E-4 0.07822045899560841 6.816597733822084E-4 27 0.0 0.0 1.704149433455521E-4 0.15610008810452572 6.816597733822084E-4 28 0.0 0.0 1.704149433455521E-4 0.21744946770892445 6.816597733822084E-4 29 0.0 0.0 1.704149433455521E-4 0.2626094276954958 6.816597733822084E-4 30 0.0 0.0 1.704149433455521E-4 0.31560847507596246 6.816597733822084E-4 31 0.0 0.0 1.704149433455521E-4 0.3653696385328637 6.816597733822084E-4 32 0.0 0.0 1.704149433455521E-4 0.4357510101345767 6.816597733822084E-4 33 0.0 0.0 1.704149433455521E-4 0.5063027966796353 6.816597733822084E-4 34 0.0 0.0 1.704149433455521E-4 0.5949185672193223 6.816597733822084E-4 35 0.0 0.0 1.704149433455521E-4 0.7402825138930783 6.816597733822084E-4 36 0.0 0.0 1.704149433455521E-4 1.0238529796200768 6.816597733822084E-4 37 0.0 0.0 1.704149433455521E-4 1.601389222618153 6.816597733822084E-4 38 0.0 1.704149433455521E-4 1.704149433455521E-4 2.249306837217942 6.816597733822084E-4 39 0.0 1.704149433455521E-4 1.704149433455521E-4 2.9824319234905072 6.816597733822084E-4 40 0.0 1.704149433455521E-4 1.704149433455521E-4 3.799401161889084 6.816597733822084E-4 41 0.0 1.704149433455521E-4 1.704149433455521E-4 4.873185719909407 6.816597733822084E-4 42 0.0 1.704149433455521E-4 1.704149433455521E-4 6.165612650242075 6.816597733822084E-4 43 0.0 1.704149433455521E-4 1.704149433455521E-4 7.409300906777913 6.816597733822084E-4 44 0.0 1.704149433455521E-4 1.704149433455521E-4 8.587208995182369 6.816597733822084E-4 45 0.0 1.704149433455521E-4 1.704149433455521E-4 9.610380315029063 6.816597733822084E-4 46 0.0 1.704149433455521E-4 1.704149433455521E-4 10.664226324677959 6.816597733822084E-4 47 0.0 1.704149433455521E-4 1.704149433455521E-4 11.690805943391565 6.816597733822084E-4 48 0.0 1.704149433455521E-4 1.704149433455521E-4 12.593493898292953 6.816597733822084E-4 49 0.0 1.704149433455521E-4 1.704149433455521E-4 13.437047867853437 6.816597733822084E-4 50 0.0 1.704149433455521E-4 1.704149433455521E-4 14.297643331748475 6.816597733822084E-4 51 0.0 1.704149433455521E-4 1.704149433455521E-4 15.222655644228132 6.816597733822084E-4 52 0.0 1.704149433455521E-4 1.704149433455521E-4 16.340918502461644 6.816597733822084E-4 53 0.0 1.704149433455521E-4 1.704149433455521E-4 17.527347338033376 6.816597733822084E-4 54 0.0 1.704149433455521E-4 1.704149433455521E-4 18.576080899381903 6.816597733822084E-4 55 0.0 1.704149433455521E-4 1.704149433455521E-4 19.453717857611498 6.816597733822084E-4 56 0.0 1.704149433455521E-4 1.704149433455521E-4 20.30068012603889 6.816597733822084E-4 57 0.0 1.704149433455521E-4 1.704149433455521E-4 21.048801727325866 6.816597733822084E-4 58 0.0 1.704149433455521E-4 1.704149433455521E-4 21.757216646813326 6.816597733822084E-4 59 0.0 1.704149433455521E-4 1.704149433455521E-4 22.426265714387963 6.816597733822084E-4 60 0.0 1.704149433455521E-4 1.704149433455521E-4 23.082022416381648 6.816597733822084E-4 61 0.0 1.704149433455521E-4 1.704149433455521E-4 23.748685674749446 6.816597733822084E-4 62 0.0 1.704149433455521E-4 1.704149433455521E-4 24.428470883754855 6.816597733822084E-4 63 0.0 1.704149433455521E-4 1.704149433455521E-4 25.151882318256725 6.816597733822084E-4 64 0.0 1.704149433455521E-4 1.704149433455521E-4 25.898981429883623 6.816597733822084E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGAT 110 0.0 44.543343 22 ACGCTTC 90 1.05501385E-10 38.883728 15 CTCGTAT 55 6.6957855E-6 38.180008 48 TATATCG 50 1.7090856E-4 35.00132 5 ACGAATA 100 1.2576493E-8 31.501188 24 ACGTTGC 45 0.0043095574 31.106981 15 TGCCGTA 45 0.0043095574 31.106981 19 GTAGATC 220 0.0 30.228413 38 CGACGAG 95 2.8217983E-7 29.472284 22 TAGATCT 235 0.0 28.29894 39 CGACGAA 310 0.0 28.224466 22 CGAACTT 50 0.007206209 28.001057 25 ACGATAC 50 0.007206209 28.001057 24 TACTCGA 50 0.007206209 28.001057 5 GACGATC 75 5.5820397E-5 28.001057 23 AAAGCGT 50 0.007206209 28.001057 35 GACGACC 680 0.0 27.790432 70 AGATCTC 230 0.0 27.390005 40 GACGCTT 95 9.397292E-6 25.786053 14 AGCGTTC 70 0.0012255695 25.000942 37 >>END_MODULE