##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779836_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 53882 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.41329200846294 27.0 21.0 34.0 12.0 34.0 2 25.686351657325265 32.0 12.0 34.0 12.0 34.0 3 25.292973534761146 31.0 11.0 34.0 11.0 34.0 4 25.953899261348873 31.0 21.0 34.0 12.0 34.0 5 25.36028729445826 31.0 11.0 34.0 11.0 34.0 6 28.04530269848929 34.0 21.0 38.0 11.0 38.0 7 27.93177684569986 34.0 12.0 38.0 12.0 38.0 8 27.375969711592 34.0 11.0 38.0 11.0 38.0 9 28.38660406072529 34.0 21.0 38.0 11.0 38.0 10-11 27.116458186407336 31.5 11.5 37.5 11.0 38.0 12-13 27.535577743959024 33.5 16.0 38.0 11.0 38.0 14-15 26.63425633792361 29.5 11.0 37.0 11.0 38.0 16-17 26.945872462046694 31.0 11.0 37.5 11.0 38.0 18-19 27.27853457555399 33.0 11.0 38.0 11.0 38.0 20-21 26.683057421773505 29.0 11.0 37.5 11.0 38.0 22-23 27.201031884488327 32.5 11.0 38.0 11.0 38.0 24-25 27.42353661705208 33.0 11.0 38.0 11.0 38.0 26-27 26.598520841839573 31.0 11.0 38.0 11.0 38.0 28-29 27.179401284287888 32.5 11.0 38.0 11.0 38.0 30-31 27.341301362235995 34.0 11.0 38.0 11.0 38.0 32-33 27.52358858245796 34.0 11.0 38.0 11.0 38.0 34-35 27.5809917968895 34.0 11.0 38.0 11.0 38.0 36-37 27.22142830629895 33.0 11.0 38.0 11.0 38.0 38-39 27.139044578894623 33.0 11.0 38.0 11.0 38.0 40-41 27.10224193608255 32.5 11.0 38.0 11.0 38.0 42-43 27.323698080991797 33.5 11.0 38.0 11.0 38.0 44-45 27.45463234475335 34.0 11.0 38.0 11.0 38.0 46-47 27.310929438402432 34.0 11.0 38.0 11.0 38.0 48-49 27.01347388738354 32.5 11.0 38.0 11.0 38.0 50-51 26.625579971047845 31.5 11.0 38.0 11.0 38.0 52-53 27.102585278942875 32.0 11.0 38.0 11.0 38.0 54-55 27.100747930663303 33.0 11.0 38.0 11.0 38.0 56-57 27.14967892802791 33.0 11.0 38.0 11.0 38.0 58-59 27.144686537248063 33.5 11.0 38.0 11.0 38.0 60-61 27.255345013176942 33.5 11.0 38.0 11.0 38.0 62-63 27.103327641884118 33.5 11.0 38.0 11.0 38.0 64-65 27.102176979325193 33.0 11.0 38.0 11.0 38.0 66-67 27.21205597416577 32.5 11.0 38.0 11.0 38.0 68-69 26.835984187669354 31.0 11.0 38.0 11.0 38.0 70-71 27.01049515608181 31.0 11.0 38.0 11.0 38.0 72-73 27.027189042722988 31.0 11.0 38.0 11.0 38.0 74-75 26.81334211796147 31.0 11.0 38.0 11.0 38.0 76 26.201031884488327 28.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 28.0 13 360.0 14 1305.0 15 2383.0 16 3149.0 17 3727.0 18 3829.0 19 3398.0 20 2700.0 21 1891.0 22 1374.0 23 1055.0 24 831.0 25 697.0 26 626.0 27 609.0 28 660.0 29 732.0 30 834.0 31 942.0 32 1215.0 33 1561.0 34 2026.0 35 3038.0 36 5141.0 37 9770.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.90171114657956 21.161055640102447 9.895698006755502 41.04153520656249 2 15.049552726327903 22.044467540180392 35.820867822278316 27.085111911213396 3 13.414498348242457 28.28031624661297 32.7307820793586 25.574403325785976 4 10.82365168330797 29.263947143758585 24.30681860361531 35.60558256931814 5 10.374522103856576 31.212649864518767 30.047140046768867 28.365687984855796 6 19.93652679051985 45.0177242441677 13.143779811065126 21.901969154247322 7 19.592412487471695 29.48327703329745 20.05456772708712 30.86974275214373 8 16.877934707967558 40.56903175516416 18.82852953731371 23.724503999554575 9 18.810668349449696 20.475509938937247 17.769446352010988 42.94437535960207 10-11 18.41651045823203 30.78636253967076 23.048941185204434 27.748185816892786 12-13 17.662670279499647 24.368991499944322 25.30900857429197 32.659329646264055 14-15 25.728443636093683 27.499907204632347 19.124197320069783 27.647451839204184 16-17 26.25576496571179 25.39739984967011 19.47328860555107 28.87354657906703 18-19 19.837417989810785 25.1380369521441 23.404571227067304 31.61997383097781 20-21 25.56048402063769 24.504472736720984 20.68779926506069 29.247243977580638 22-23 26.534399881219723 23.852563983593473 19.6590634917689 29.953972643417902 24-25 19.710284796911683 30.508254377743338 19.20175202531528 30.5797088000297 26-27 24.31609814038083 30.435952637244352 20.194127909134778 25.053821313240043 28-29 20.45138179995917 29.040071270810518 22.85305963362349 27.65548729560682 30-31 21.53966074013585 27.253071526669387 23.451245313833933 27.756022419360825 32-33 18.96644519505586 28.90204520990312 23.681377825618945 28.45013176942207 34-35 18.328863482400543 32.24231850703885 22.179121929490808 27.249696081069796 36-37 23.514070389070387 25.792619542619544 22.901507276507278 27.791802791802795 38-39 24.01325253125203 23.734838009150558 25.38583612521229 26.86607333438512 40-41 20.546940972318886 28.40956543526071 23.207408850904297 27.836084741516103 42-43 17.075275602241934 27.833042574514682 25.012991351471737 30.07869047177165 44-45 16.555768998765743 24.694451404549124 28.21719238657349 30.53258721011164 46-47 19.08332482669661 27.105856587384814 24.920424280106534 28.890394305812045 48-49 19.878623659106935 27.276270368583198 24.427452581567128 28.417653390742736 50-51 24.990488210020324 26.663635266933305 20.910162303616335 27.435714219430036 52-53 15.383901474723663 29.798884444403196 24.044770717129627 30.772443363743513 54-55 17.88813304501963 26.57281003777157 22.991471235139624 32.547585682069176 56-57 19.708035971156253 27.638209609013202 21.84904364611658 30.804710773713957 58-59 18.45509893455099 28.278947173033377 22.386494412889334 30.8794594795263 60-61 16.331910154074624 26.440504919250046 23.752552441061816 33.47503248561352 62-63 18.12216942608954 27.41758853663969 22.69285024871928 31.767391788551492 64-65 18.73955819565621 26.16391312418786 22.55801002413217 32.53851865602376 66-67 16.644855909786997 32.426562717527496 19.56285674509258 31.36572462759293 68-69 17.334174678000075 34.25633792361085 18.376266656768493 30.033220741620582 70-71 15.871719683753389 32.439404624921124 19.28102149140715 32.40785419991834 72-73 15.737312435622616 29.911936378905562 19.5707246457504 34.780026539721426 74-75 16.08448717472809 28.773339767623145 22.46464234010171 32.67753071754705 76 14.440815114509483 31.60981403808322 20.340744590030067 33.60862625737723 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 1.0 12 1.0 13 0.5 14 1.0 15 2.5 16 5.5 17 8.0 18 10.5 19 18.0 20 21.5 21 20.0 22 30.0 23 56.0 24 98.0 25 124.0 26 145.5 27 195.0 28 243.0 29 263.0 30 303.0 31 416.5 32 552.5 33 615.0 34 713.5 35 884.0 36 1070.5 37 1185.0 38 1350.5 39 1596.5 40 1877.0 41 2208.0 42 2339.0 43 2469.0 44 2774.5 45 2991.0 46 3032.0 47 3077.5 48 3108.0 49 3067.0 50 3041.0 51 3038.5 52 2923.5 53 2620.5 54 2430.0 55 2352.0 56 2172.5 57 1864.0 58 1657.0 59 1547.5 60 1365.5 61 1181.0 62 1069.0 63 972.5 64 780.5 65 644.0 66 562.0 67 521.0 68 466.5 69 382.0 70 323.5 71 295.0 72 268.5 73 234.5 74 192.0 75 157.0 76 143.5 77 122.0 78 97.0 79 80.0 80 71.5 81 57.5 82 50.0 83 48.0 84 43.0 85 31.0 86 19.0 87 14.0 88 13.0 89 11.0 90 9.5 91 7.5 92 6.0 93 5.0 94 4.0 95 4.0 96 4.0 97 7.0 98 5.5 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0018559073531049328 7 0.007423629412419731 8 0.0018559073531049328 9 0.005567722059314799 10-11 0.0018559073531049328 12-13 0.0 14-15 0.0 16-17 9.279536765524664E-4 18-19 0.0027838610296573997 20-21 0.0 22-23 0.0018559073531049328 24-25 0.0027838610296573997 26-27 0.0 28-29 0.005567722059314799 30-31 0.0 32-33 0.0 34-35 0.004639768382762333 36-37 0.018559073531049332 38-39 0.010207490442077131 40-41 9.279536765524664E-4 42-43 0.0 44-45 0.006495675735867265 46-47 0.004639768382762333 48-49 0.0 50-51 0.0027838610296573997 52-53 0.013919305148286997 54-55 0.010207490442077131 56-57 0.010207490442077131 58-59 0.014847258824839463 60-61 0.022270888237259198 62-63 0.011135444118629599 64-65 0.022270888237259198 66-67 0.017631119854496866 68-69 0.0 70-71 0.0 72-73 9.279536765524664E-4 74-75 0.007423629412419731 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 53882.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.61823985746632 #Duplication Level Percentage of deduplicated Percentage of total 1 90.11054086063956 76.24995360231617 2 5.235337983067947 8.86010170372295 3 2.5902531034785277 6.575479752050778 4 1.173400008773084 3.9716417356445564 5 0.5483177611089178 2.319884191381166 6 0.16888187042154668 0.8574291971344791 7 0.08773084177742685 0.5196540588693813 8 0.05263850506645612 0.35633421179614716 9 0.01315962626661403 0.10021899706766638 >10 0.01973943939992104 0.18930255001670318 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.011135444118629599 0.0 6 0.0 0.0 0.0 0.011135444118629599 0.0 7 0.0 0.0 0.0 0.011135444118629599 0.0 8 0.0 0.0 0.0 0.012991351471734532 0.0 9 0.0 0.0 0.0 0.012991351471734532 0.0 10 0.0 0.0 0.0 0.012991351471734532 0.0 11 0.0 0.0 0.0 0.012991351471734532 0.0 12 0.0 0.0 0.0 0.014847258824839464 0.0 13 0.0 0.0 0.0 0.014847258824839464 0.0 14 0.0 0.0 0.0 0.014847258824839464 0.0 15 0.0 0.0 0.0 0.016703166177944397 0.0 16 0.0 0.0 0.0 0.016703166177944397 0.0 17 0.0 0.0 0.0 0.016703166177944397 0.0 18 0.0 0.0 0.0 0.020414980884154263 0.0 19 0.0 0.0 0.0 0.02969451764967893 0.0 20 0.0 0.0 0.0 0.02969451764967893 0.0 21 0.0 0.0 0.0 0.033406332355888795 0.0 22 0.0 0.0 0.0 0.06681266471177759 0.0 23 0.0 0.0 0.0 0.07052447941798745 0.0 24 0.0 0.0 0.0 0.08537173824282691 0.0 25 0.0 0.0 0.0 0.11321034853940092 0.0 26 0.0 0.0 0.0 0.11692216324561078 0.0 27 0.0 0.0 0.0 0.12248988530492558 0.0 28 0.0 0.0 0.0 0.1633198470732341 0.0 29 0.0 0.0 0.0 0.1911584573698081 0.0 30 0.0 0.0 0.0 0.2245647897256969 0.0 31 0.0 0.0 0.0 0.2579711220815857 0.0 32 0.0 0.0 0.0 0.2932333617905794 0.0 33 0.0 0.0 0.0 0.3359192309119929 0.0 34 0.0 0.0 0.0 0.38417282209272113 0.0 35 0.0 0.0 0.0 0.43613822797965923 0.0 36 0.0 0.0 0.0 0.5512044838721651 0.0 37 0.0 0.0 0.0 0.7460747559481831 0.0 38 0.0 0.0 0.0 0.9836308971456145 0.0 39 0.0 0.0 0.0 1.3158383133513976 0.0 40 0.0 0.0 0.0 1.6814520619130693 0.0 41 0.0 0.0 0.0 2.130581641364463 0.0 42 0.0 0.0 0.0 2.5351694443413386 0.0 43 0.0 0.0 0.0 3.0418321517389852 0.009279536765524664 44 0.0 0.0 0.0 3.518800341486953 0.009279536765524664 45 0.0 0.0 0.0 3.912252700345199 0.009279536765524664 46 0.0 0.0 0.0 4.274154634200661 0.009279536765524664 47 0.0 0.0 0.0 4.7325637504175795 0.009279536765524664 48 0.0 0.0 0.0 5.159422441631714 0.009279536765524664 49 0.0 0.0 0.0 5.543595263724435 0.009279536765524664 50 0.0 0.0 0.0 5.918488549051632 0.009279536765524664 51 0.0 0.0 0.0 6.2970936490850375 0.009279536765524664 52 0.0 0.0 0.0 6.749935043242641 0.009279536765524664 53 0.0 0.0 0.0 7.148955124160202 0.009279536765524664 54 0.0 0.0 0.0 7.514568872721874 0.009279536765524664 55 0.0 0.0 0.0 7.817081771277977 0.009279536765524664 56 0.0 0.0 0.0 8.132586021305816 0.009279536765524664 57 0.0 0.0 0.0 8.483352511042648 0.009279536765524664 58 0.0 0.0 0.0 8.85267807431053 0.009279536765524664 59 0.0 0.0 0.0 9.129208269923165 0.009279536765524664 60 0.0 0.0 0.0 9.470695222894474 0.009279536765524664 61 0.0 0.0 0.0 9.771352214097472 0.009279536765524664 62 0.0 0.0 0.0 10.133254147952934 0.009279536765524664 63 0.0 0.0 0.0 10.491444267102187 0.009279536765524664 64 0.0 0.0 0.0 10.773542184774136 0.009279536765524664 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATACA 15 0.0022133747 70.00001 2 GTCTGCG 15 0.0022133747 70.00001 33 TATGCAG 15 0.0022133747 70.00001 28 TTCTTAA 15 0.0022133747 70.00001 40 ACGCTTC 25 2.8043687E-6 70.0 15 GATACAC 30 8.272584E-6 58.333336 3 GACGCTT 30 8.272584E-6 58.333336 14 ACGAAGG 30 8.272584E-6 58.333336 24 TGGACGC 25 2.370559E-4 55.999996 49 AAGGCCT 25 2.370559E-4 55.999996 27 GGTCGCC 60 8.185452E-11 52.500004 50 CCGACTA 60 8.185452E-11 52.500004 21 TCACGCT 20 0.0069162888 52.5 13 AATCCGA 20 0.0069162888 52.5 9 ATCTAGT 20 0.0069162888 52.5 31 TGGACAT 20 0.0069162888 52.5 37 TAGAACG 20 0.0069162888 52.5 39 ATATGCA 20 0.0069162888 52.5 27 GGAACTG 20 0.0069162888 52.5 33 GATATGC 20 0.0069162888 52.5 26 >>END_MODULE