##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779836_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 53882 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.5663486878735 34.0 34.0 34.0 34.0 34.0 2 33.682806874280836 34.0 34.0 34.0 34.0 34.0 3 33.783100107642625 34.0 34.0 34.0 34.0 34.0 4 33.567480791358896 34.0 34.0 34.0 34.0 34.0 5 33.62094948220185 34.0 34.0 34.0 34.0 34.0 6 37.347945510560116 38.0 38.0 38.0 37.0 38.0 7 37.38396867228388 38.0 38.0 38.0 37.0 38.0 8 37.28269180802494 38.0 38.0 38.0 37.0 38.0 9 37.2147655989013 38.0 38.0 38.0 36.0 38.0 10-11 37.15098734271185 38.0 38.0 38.0 36.5 38.0 12-13 37.3185293790134 38.0 38.0 38.0 36.5 38.0 14-15 37.33450874132363 38.0 38.0 38.0 37.0 38.0 16-17 37.1644612300954 38.0 38.0 38.0 36.0 38.0 18-19 36.976077354218475 38.0 38.0 38.0 35.5 38.0 20-21 37.10196354997959 38.0 38.0 38.0 35.5 38.0 22-23 37.1029286218032 38.0 38.0 38.0 36.0 38.0 24-25 37.24319809955087 38.0 38.0 38.0 36.0 38.0 26-27 37.133810920158865 38.0 38.0 38.0 36.0 38.0 28-29 36.469089863034036 38.0 37.0 38.0 34.0 38.0 30-31 36.61068631453918 38.0 37.0 38.0 34.0 38.0 32-33 36.77361642106826 38.0 37.0 38.0 35.0 38.0 34-35 36.919852640956165 38.0 38.0 38.0 35.5 38.0 36-37 36.791396013511005 38.0 37.0 38.0 34.5 38.0 38-39 34.68441223414127 37.0 35.0 38.0 25.5 38.0 40-41 36.204446754018036 38.0 37.0 38.0 33.0 38.0 42-43 37.08566868341932 38.0 37.5 38.0 36.0 38.0 44-45 36.89192123529193 38.0 37.5 38.0 35.0 38.0 46-47 37.05705059203444 38.0 38.0 38.0 36.0 38.0 48-49 36.60000556772206 38.0 37.0 38.0 34.0 38.0 50-51 36.66184440072752 38.0 37.0 38.0 34.0 38.0 52-53 36.59527300397164 38.0 37.0 38.0 34.0 38.0 54-55 36.62858654095987 38.0 37.0 38.0 34.0 38.0 56-57 36.50685757766972 38.0 37.0 38.0 34.0 38.0 58-59 36.50764633829479 38.0 37.0 38.0 34.0 38.0 60-61 36.102659515237 38.0 37.0 38.0 33.0 38.0 62-63 35.980123232248246 38.0 37.0 38.0 33.0 38.0 64-65 36.48544968635166 38.0 37.0 38.0 34.0 38.0 66-67 36.097258824839464 38.0 37.0 38.0 32.5 38.0 68-69 35.91369102854385 38.0 37.0 38.0 31.0 38.0 70-71 33.267529044950074 37.5 31.0 38.0 20.0 38.0 72-73 28.534009502245645 35.0 21.5 38.0 11.0 38.0 74-75 27.74437660072009 34.0 19.0 38.0 11.0 38.0 76 27.829961768308525 34.0 19.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 3.0 23 2.0 24 13.0 25 39.0 26 70.0 27 161.0 28 269.0 29 446.0 30 736.0 31 1147.0 32 1836.0 33 2779.0 34 5201.0 35 11433.0 36 10566.0 37 19180.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.50046425255339 12.256267409470752 12.371402042711235 53.871866295264624 2 10.578671912698118 11.194833153928956 59.41316209494823 18.813332838424706 3 10.051594224416318 13.85249248357522 58.9566088860844 17.139304405924054 4 7.349393118295534 45.62191455402546 29.254667606993056 17.774024720685944 5 7.444044393303886 25.90661074199176 58.245796369845216 8.403548494859137 6 15.524665008722765 59.65257414349876 14.854682454251883 9.968078393526596 7 14.581864073345457 23.078207935859844 15.201737129282506 47.13819086151219 8 12.62944953787907 59.5560669611373 11.591997327493411 16.222486173490218 9 12.67399131435359 15.179466241045247 11.32845848335251 60.81808396124866 10-11 13.514717345310123 36.41754203630155 32.70943914479789 17.358301473590437 12-13 14.072417504918155 13.985189859322222 36.8870865966371 35.05530603912253 14-15 13.240971010727145 13.258602130581643 16.769978842656176 56.73044801603504 16-17 33.87587691622434 32.880182621283545 12.857726142310977 20.386214320181136 18-19 35.018187892060425 19.35247392450169 13.48687873501355 32.14245944842433 20-21 14.86488994469396 14.125310864481644 13.544411862959802 57.46538732786459 22-23 13.475743290894918 34.81774989792509 13.350469544560337 38.35603726661965 24-25 33.715351565037444 35.1398001132135 12.977793450320618 18.16705487142844 26-27 35.33833191047103 38.531420511488065 13.030325526149737 13.09992205189117 28-29 14.640325154968265 37.394677257711294 14.43895920715638 33.52603838016407 30-31 13.498014179132179 38.84785271519246 32.84306447422144 14.811068631453919 32-33 52.41731932741918 16.841431275750715 18.57113692884451 12.170112467985598 34-35 19.545488289224604 32.884822389666304 35.26966333840615 12.300025982702943 36-37 33.39612486544672 37.01050443561857 16.715229575739578 12.87814112319513 38-39 14.806428863071156 18.75394380312535 34.329646264058496 32.109981069745 40-41 12.594187298170075 13.967558739467725 37.36498274006161 36.07327122230058 42-43 33.49696553516082 13.42309905161374 35.92732131920343 17.152614094022013 44-45 14.144797891689247 33.90278757284436 38.00341486952971 13.948999665936675 46-47 33.17991165880999 15.022642069707882 19.929661111317323 31.867785160164804 48-49 31.80468431015924 12.944025834230356 16.288370884525445 38.96291897108497 50-51 15.91491257378327 13.30883171845417 36.810892081523555 33.965363626239004 52-53 11.654351700579237 13.38463537798901 57.04830684687361 17.912706074558145 54-55 11.20436736361273 13.51060274074349 40.829836223864525 34.455193671779256 56-57 32.04107020182328 13.37845114094209 20.534172561688855 34.04630609554577 58-59 13.18745590255858 14.438894871699654 54.23428274351071 18.13936648223105 60-61 31.85674767465607 33.36520431465013 20.80277741677961 13.97527059391419 62-63 12.717551725098158 59.123945309236724 14.160934903882746 13.99756806178237 64-65 10.892182612972983 61.39753310997058 13.38784374506947 14.322440531986969 66-67 10.85273476662582 61.16557127473915 13.324792989491662 14.656900969143367 68-69 11.089147502644913 60.97314252835162 13.202294114371623 14.735415854631848 70-71 11.420881670533642 57.71600928074246 13.649187935034805 17.213921113689096 72-73 13.15679558934091 48.70195565208513 15.544974428944021 22.59627432962994 74-75 14.35876969910716 44.64945334397565 16.469288883113993 24.522488073803203 76 13.949214834614098 46.27464082860007 15.662471693210083 24.11367264357575 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 2.5 15 2.5 16 0.0 17 0.0 18 12.0 19 29.0 20 29.0 21 24.0 22 32.0 23 62.5 24 87.0 25 89.0 26 122.0 27 167.5 28 222.5 29 265.0 30 268.0 31 358.5 32 453.5 33 461.0 34 577.5 35 727.0 36 859.5 37 959.0 38 1112.5 39 4025.0 40 8016.0 41 8436.5 42 7625.0 43 6299.0 44 4047.0 45 2630.0 46 2139.0 47 1885.0 48 1578.0 49 1436.0 50 1347.0 51 1289.0 52 1112.5 53 989.0 54 984.0 55 906.5 56 830.0 57 771.5 58 712.0 59 630.0 60 550.5 61 489.0 62 425.0 63 416.5 64 371.0 65 293.0 66 262.5 67 273.0 68 276.5 69 247.5 70 179.5 71 144.0 72 147.0 73 129.5 74 110.0 75 111.0 76 89.0 77 70.0 78 64.5 79 56.0 80 50.5 81 40.0 82 28.5 83 22.0 84 17.5 85 15.0 86 13.5 87 10.0 88 6.5 89 2.5 90 2.5 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05938903529935785 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0027838610296573997 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0018559073531049328 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.014847258824839463 52-53 0.033406332355888795 54-55 0.05196540588693812 56-57 0.042685869121413464 58-59 0.044541776474518395 60-61 0.03526223970899373 62-63 0.02876656397312646 64-65 0.01577521250139193 66-67 0.037118147062098664 68-69 0.009279536765524666 70-71 0.01299135147173453 72-73 0.023198841913811663 74-75 0.016703166177944397 76 0.014847258824839463 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 53882.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.04918154485728 #Duplication Level Percentage of deduplicated Percentage of total 1 49.396162110098544 12.373334323150589 2 19.641401792991033 9.840020786162356 3 13.195524931466252 9.916112987639657 4 8.090686819293175 8.106603318362348 5 4.608431503297028 5.771871868156342 6 2.133807512780618 3.207007906165324 7 1.1484033488923464 2.0136594781188526 8 0.5704971475142625 1.1432389295126388 9 0.2741349929613988 0.6180171485839426 >10 0.7853597095650885 3.1568984076314908 >50 0.06668148477439431 1.2007720574588916 >100 0.05927243091057272 3.303515088526781 >500 0.00740905386382159 0.9780631750862997 >1k 0.01481810772764318 6.23770461378568 >5k 0.0 0.0 >10k+ 0.00740905386382159 32.13317991165881 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT 17314 32.13317991165881 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 2089 3.8769904606362053 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 1272 2.360714153149475 No Hit ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT 527 0.9780631750862997 RNA PCR Primer, Index 47 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 436 0.8091756059537507 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT 320 0.5938903529935786 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT 299 0.554916298578375 No Hit CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 194 0.360046026502357 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAGCTCGTATGCCGT 142 0.2635388441409005 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATATCGTATGCCGT 137 0.25425930737537583 No Hit CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 135 0.250547492669166 No Hit CTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 117 0.21714116031327715 No Hit TTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 84 0.15589621766081438 No Hit CTTATACACATCTCCGAGCCCACGAGACCATGGTAGATCTCGTATGCCGT 80 0.14847258824839465 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCG 79 0.1466166808952897 No Hit CTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 76 0.14104895883597493 No Hit TCTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 75 0.13919305148286998 No Hit CCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 73 0.13548123677666013 No Hit TATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCT 67 0.12434579265803052 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCAGT 61 0.1132103485394009 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001855907353104933 0.0 2 0.0 0.0 0.0 0.001855907353104933 0.0 3 0.0 0.0 0.0 0.001855907353104933 0.0 4 0.0 0.0 0.0 0.001855907353104933 0.0 5 0.0 0.0 0.0 0.011135444118629599 0.0 6 0.0 0.0 0.0 0.011135444118629599 0.0 7 0.0 0.0 0.0 0.011135444118629599 0.0 8 0.0 0.0 0.0 0.014847258824839464 0.0 9 0.0 0.0 0.0 0.014847258824839464 0.0 10 0.0 0.0 0.0 0.014847258824839464 0.0 11 0.0 0.0 0.0 0.014847258824839464 0.0 12 0.0 0.0 0.0 0.016703166177944397 0.0 13 0.0 0.0 0.0 0.016703166177944397 0.0 14 0.0 0.0 0.0 0.016703166177944397 0.0 15 0.0 0.0 0.0 0.01855907353104933 0.0 16 0.0 0.0 0.0 0.01855907353104933 0.0 17 0.0 0.0 0.0 0.01855907353104933 0.0 18 0.0 0.0 0.0 0.01855907353104933 0.0 19 0.0 0.0 0.0 0.027838610296573994 0.0 20 0.0 0.0 0.0 0.027838610296573994 0.0 21 0.0 0.0 0.0 0.033406332355888795 0.0 22 0.0 0.0 0.0 0.033406332355888795 0.0 23 0.0 0.0 0.0 0.040829961768308526 0.0 24 0.0 0.0 0.0 0.046397683827623326 0.0 25 0.0 0.0 0.0 0.05753312794625292 0.0 26 0.0 0.0 0.0 0.06124494265246279 0.0 27 0.0 0.0 0.0 0.06681266471177759 0.0 28 0.0 0.0 0.0 0.11135444118629598 0.0 29 0.0 0.0 0.0 0.1354812367766601 0.0 30 0.0 0.0 0.0 0.16703166177944398 0.0 31 0.0 0.0 0.0 0.20043799413533275 0.0 32 0.0 0.0 0.0 0.23570023384432648 0.0 33 0.0 0.0 0.0 0.2820979176719498 0.0 34 0.0 0.0 0.0 0.3377751382650978 0.0 35 0.0 0.0 0.0 0.3897405441520359 0.0 36 0.0 0.0 0.0 0.5196540588693812 0.0 37 0.0 0.0 0.0 0.7776251809509669 0.0 38 0.0 0.0 0.0 1.0318844883263427 0.0 39 0.0 0.0 0.0 1.3733714412976503 0.0 40 0.0 0.0 0.0 1.7631119854496864 0.0 41 0.0 0.0 0.0 2.221521101666605 0.0 42 0.0 0.0 0.0 2.6465238855276345 0.0 43 0.0 0.0 0.0 3.1791692958687503 0.0 44 0.0 0.0 0.0 3.665417022382243 0.0 45 0.0 0.0 0.0 4.077428454771538 0.0 46 0.0 0.0 0.0 4.459745369511154 0.0 47 0.0 0.0 0.0 4.934857651906017 0.0 48 0.0 0.0 0.0 5.372851787238781 0.0 49 0.0 0.0 0.0 5.757024609331502 0.0 50 0.0 0.0 0.0 6.131917894658699 0.0 51 0.0 0.0 0.0 6.506811179985895 0.0 52 0.0 0.0 0.0 6.968932110909023 0.0 53 0.0 0.0 0.0 7.371664006532794 0.0 54 0.0 0.0 0.0 7.73542184774136 0.0 55 0.0 0.0 0.0 8.02494339482573 0.0 56 0.0 0.0 0.0 8.338591737500463 0.0 57 0.0 0.0 0.0 8.698637764002822 0.0 58 0.0 0.0 0.0 9.067963327270702 0.0 59 0.0 0.0 0.0 9.350061244942653 0.0 60 0.0 0.0 0.0 9.69897182732638 0.0 61 0.0 0.0 0.0 10.018187892060428 0.0 62 0.0 0.0 0.0 10.396792992093834 0.0 63 0.0 0.0 0.0 10.766118555361716 0.0 64 0.0 0.0 0.0 11.057496009799191 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCTAGG 15 0.002205341 70.064125 1 CATGCAA 15 0.0022134918 69.99907 38 TCGATCT 15 0.0022134918 69.99907 34 AACATGG 15 0.0022134918 69.99907 28 ATGCAAG 15 0.0022134918 69.99907 39 CTTTATA 90 0.0 62.221397 2 GATATCG 35 2.9228977E-7 59.999203 36 TATCGTA 35 2.9228977E-7 59.999203 38 TTTATAC 95 0.0 58.946583 3 CAGTCTT 30 8.273239E-6 58.332558 47 ATCGTAT 50 9.531504E-10 55.999256 39 GTAGAGC 25 2.3707145E-4 55.999256 33 GCTCGTA 25 2.3707145E-4 55.999256 38 TTACACA 50 9.531504E-10 55.999256 3 TCTTTAT 95 0.0 55.31378 1 CTATACA 20 0.0068912543 52.54809 1 GAGTGGA 20 0.006916651 52.499306 28 AGATATC 40 7.3514457E-7 52.499306 35 ATATCGT 40 7.3514457E-7 52.499306 37 GTTAATA 20 0.006916651 52.499306 2 >>END_MODULE