##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779835_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 84827 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.643085338394616 32.0 21.0 34.0 12.0 34.0 2 27.09884824407323 33.0 21.0 34.0 12.0 34.0 3 26.633819420703315 33.0 21.0 34.0 11.0 34.0 4 27.03741733174579 33.0 21.0 34.0 12.0 34.0 5 27.193146050196283 34.0 21.0 34.0 11.0 34.0 6 29.614462376366017 36.0 21.0 38.0 11.0 38.0 7 29.734318082685938 36.0 21.0 38.0 12.0 38.0 8 29.208058754877573 34.0 21.0 38.0 11.0 38.0 9 29.928619425418795 36.0 23.0 38.0 11.0 38.0 10-11 28.6166138139979 34.0 21.0 38.0 11.0 38.0 12-13 29.13485682624636 35.0 21.0 38.0 11.0 38.0 14-15 28.181669751376333 34.0 21.0 38.0 11.0 38.0 16-17 28.604412510167755 34.5 21.0 38.0 11.0 38.0 18-19 29.087059544720432 35.5 21.0 38.0 11.0 38.0 20-21 28.328450847018047 33.5 21.0 38.0 11.0 38.0 22-23 28.929438740023812 35.0 21.0 38.0 11.0 38.0 24-25 29.17882278048263 35.0 21.0 38.0 11.0 38.0 26-27 28.29895552123734 34.0 21.0 38.0 11.0 38.0 28-29 29.01006754924729 35.0 21.0 38.0 11.0 38.0 30-31 29.300588256097704 36.5 21.0 38.0 11.0 38.0 32-33 29.461733881900813 37.0 21.0 38.0 11.0 38.0 34-35 29.42099803128721 36.5 21.0 38.0 11.0 38.0 36-37 29.05244202907093 35.5 21.0 38.0 11.0 38.0 38-39 28.975703490633876 35.5 21.0 38.0 11.0 38.0 40-41 28.961350749171842 35.5 21.0 38.0 11.0 38.0 42-43 29.26436158298655 36.5 21.0 38.0 11.0 38.0 44-45 29.32387683166916 36.0 21.0 38.0 11.0 38.0 46-47 29.231229443455504 36.0 21.0 38.0 11.0 38.0 48-49 28.91486790762375 35.5 21.0 38.0 11.0 38.0 50-51 28.426874697914577 34.5 21.0 38.0 11.0 38.0 52-53 28.91562238438233 34.5 21.0 38.0 11.0 38.0 54-55 28.98649015054169 35.5 21.0 38.0 11.0 38.0 56-57 29.0139872917821 36.0 21.0 38.0 11.0 38.0 58-59 29.117497966449363 36.0 21.0 38.0 11.0 38.0 60-61 29.093879307296028 36.0 21.0 38.0 11.0 38.0 62-63 29.012472443915264 36.0 21.0 38.0 11.0 38.0 64-65 29.005069140721705 36.0 21.0 38.0 11.0 38.0 66-67 29.04133117993092 36.0 21.0 38.0 11.0 38.0 68-69 28.605685689697857 34.0 21.0 38.0 11.0 38.0 70-71 28.69139542834239 34.0 21.0 38.0 11.0 38.0 72-73 28.79910287997925 34.5 21.0 38.0 11.0 38.0 74-75 28.705082108290995 35.0 21.0 38.0 11.0 38.0 76 27.99065156141323 33.0 21.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 51.0 13 556.0 14 1582.0 15 2942.0 16 3893.0 17 4511.0 18 4581.0 19 4150.0 20 3214.0 21 2333.0 22 1670.0 23 1330.0 24 1167.0 25 1105.0 26 1047.0 27 1073.0 28 1233.0 29 1304.0 30 1569.0 31 1868.0 32 2321.0 33 2915.0 34 4032.0 35 5727.0 36 9787.0 37 18864.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.246315988022538 20.134156980171174 9.802419069624879 38.81710796218141 2 16.484138305020807 21.424782203779458 34.73893925283223 27.3521402383675 3 20.34375847312766 20.96855953882608 31.855423391137254 26.832258596909004 4 13.233993893453736 25.55790019687128 29.91146686786047 31.296639041814515 5 14.069812677567285 30.85809942589034 35.75866174684947 19.313426149692905 6 23.43884468022399 42.30002947244327 15.068670792808724 19.19245505452402 7 21.196901637604782 34.35550996828541 17.201334606632948 27.246253787476864 8 18.84608129774592 38.74493067999622 15.837498821088372 26.57148920116948 9 21.527941523225653 18.7844847913228 17.131572742277765 42.55600094317378 10-11 20.472389889653872 29.3719937753466 22.54432707724229 27.61128925775724 12-13 20.10326900633053 23.83439235149186 24.98202223348698 31.080316408690628 14-15 25.472732416947636 26.347464220875676 20.32926225449744 27.85054110767925 16-17 26.30176712603298 25.425866764119913 20.17282233251205 28.099543777335047 18-19 20.72772498997949 25.498667861268952 23.96435055289652 29.809256595855043 20-21 25.37340705199995 24.493970080281045 21.80555719287491 28.327065674844093 22-23 26.420432775907905 24.508249385495937 20.53003554397609 28.541282294620068 24-25 21.178897730621866 29.3964043619216 19.892130857648098 29.532567049808428 26-27 23.95831491338202 29.29096449812264 21.419603543703914 25.33111704479143 28-29 21.360951628685616 28.164530846586423 23.562005588107 26.912511936620966 30-31 22.577260643784665 26.749895374676548 23.40718997011547 27.26565401142332 32-33 20.425689933629624 28.654791516851947 23.53495938793073 27.384559161587703 34-35 19.85911756904123 29.955495299006753 23.03103539744761 27.154351734504406 36-37 23.835941092546957 25.55918453974131 23.53409345485845 27.070780912853287 38-39 24.30456900667873 23.791727333282246 25.250673473117075 26.65303018692195 40-41 21.450843781129716 27.489051180939917 23.839837786540762 27.2202672513896 42-43 18.503062132706173 26.78585111963832 25.252721732005917 29.45836501564959 44-45 18.533560468968282 24.617298068364683 27.542160578606417 29.306980884060618 46-47 20.109518953616544 26.347030079398294 25.548331574821248 27.995119392163915 48-49 20.54004031735179 27.007910217265728 24.71088214837257 27.741167317009914 50-51 24.742116121426466 26.483348069554967 21.997052755673447 26.777483053345126 52-53 17.3208201186083 28.48662414374477 24.650718605939847 29.541837131707087 54-55 19.2946363834641 26.115430639637356 23.901369346215287 30.68856363068326 56-57 20.568174449245717 27.180762950168308 22.821300351940387 29.42976224864559 58-59 19.767503551701573 27.62369058636972 22.999109864003724 29.60969599792498 60-61 17.858890533154888 26.18372412491967 23.980473194861244 31.9769121470642 62-63 19.756899824335957 26.314827695971516 23.40163402930878 30.526638450383746 64-65 19.97122963818912 25.71645865144825 23.124178305496436 31.188133404866203 66-67 18.327054925749724 30.375702267890514 21.035907775203533 30.26133503115623 68-69 19.036981149869735 32.08235585367866 19.74430311103776 29.136359885413842 70-71 18.000271141683317 30.41207641479962 20.473554844299834 31.114097599217228 72-73 17.622508709569033 28.422963788235155 20.790964448452907 33.163563053742905 74-75 17.596571583520493 27.957274479636407 23.079326342098902 31.366827594744194 76 16.26091979769638 29.77022741473421 21.161713214576235 32.80713957299317 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 1.0 11 1.5 12 1.0 13 2.0 14 4.5 15 6.0 16 13.0 17 20.0 18 25.0 19 44.0 20 79.0 21 100.0 22 121.0 23 168.0 24 235.0 25 276.0 26 307.0 27 412.5 28 536.0 29 585.0 30 657.0 31 815.5 32 1103.5 33 1305.0 34 1396.5 35 1625.0 36 1936.0 37 2110.0 38 2233.0 39 2532.5 40 2912.5 41 3315.0 42 3514.0 43 3612.0 44 3874.5 45 4111.5 46 4184.0 47 4251.5 48 4294.5 49 4288.5 50 4307.0 51 4269.0 52 4053.5 53 3784.0 54 3692.0 55 3600.5 56 3334.5 57 2988.5 58 2817.0 59 2635.0 60 2283.5 61 1969.5 62 1825.0 63 1714.0 64 1454.0 65 1191.5 66 1043.0 67 1008.0 68 888.5 69 756.0 70 684.0 71 625.0 72 575.0 73 491.5 74 408.0 75 358.0 76 350.0 77 304.5 78 244.0 79 221.0 80 206.5 81 173.0 82 123.0 83 92.0 84 93.5 85 81.0 86 60.0 87 53.0 88 44.0 89 29.0 90 17.0 91 12.5 92 14.0 93 13.5 94 10.0 95 6.0 96 5.0 97 6.5 98 6.5 99 5.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0011788699352800404 2 0.0 3 0.0 4 0.0 5 0.0 6 0.002357739870560081 7 0.009430959482240323 8 0.0035366098058401216 9 0.008252089546960283 10-11 0.0035366098058401216 12-13 0.0 14-15 0.0011788699352800404 16-17 0.0 18-19 0.0011788699352800404 20-21 0.0 22-23 0.0029471748382001012 24-25 0.002357739870560081 26-27 5.894349676400202E-4 28-29 0.004715479741120162 30-31 5.894349676400202E-4 32-33 0.0 34-35 0.0053049147087601825 36-37 0.018861918964480646 38-39 0.0064837846440402224 40-41 5.894349676400202E-4 42-43 5.894349676400202E-4 44-45 0.0029471748382001012 46-47 0.0017683049029200608 48-49 0.0 50-51 0.002357739870560081 52-53 0.011788699352800405 54-55 0.0064837846440402224 56-57 0.013557004255720467 58-59 0.010020394449880345 60-61 0.024166833673240833 62-63 0.007073219611680243 64-65 0.02063022386740071 66-67 0.014735874191000508 68-69 0.0 70-71 5.894349676400202E-4 72-73 0.007662654579320263 74-75 0.007662654579320263 76 0.004715479741120162 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 84827.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.67124854114846 #Duplication Level Percentage of deduplicated Percentage of total 1 86.73992781049525 69.97418274841736 2 7.0158261606581815 11.31950911855895 3 3.6343177799535296 8.795548587124383 4 1.5300083295582412 4.93710728895281 5 0.6532127252268709 2.6347743053508905 6 0.24696409522000262 1.1953741143739611 7 0.09644751647645072 0.5446379100993788 8 0.04530110622378746 0.2923597439494501 9 0.02484254212272216 0.1803671000978462 >10 0.013151934064970554 0.12613908307496433 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008252089546960283 0.0 2 0.0 0.0 0.0 0.008252089546960283 0.0 3 0.0 0.0 0.0 0.008252089546960283 0.0 4 0.0 0.0 0.0 0.02004078889976069 0.0 5 0.0 0.0 0.0 0.02357739870560081 0.0 6 0.0011788699352800406 0.0 0.0 0.02357739870560081 0.0 7 0.0011788699352800406 0.0 0.0 0.024756268640880853 0.0 8 0.0011788699352800406 0.0 0.0 0.024756268640880853 0.0 9 0.0011788699352800406 0.0 0.0 0.025935138576160893 0.0 10 0.0011788699352800406 0.0 0.0 0.027114008511440933 0.0 11 0.0011788699352800406 0.0 0.0 0.028292878446720973 0.0 12 0.0011788699352800406 0.0 0.0 0.029471748382001013 0.0 13 0.0011788699352800406 0.0 0.0 0.03418722812312117 0.0 14 0.0011788699352800406 0.0 0.0 0.03536609805840122 0.0 15 0.0011788699352800406 0.0 0.0 0.03536609805840122 0.0 16 0.0011788699352800406 0.0 0.0 0.03536609805840122 0.0 17 0.0011788699352800406 0.0 0.0 0.03536609805840122 0.0 18 0.0011788699352800406 0.0 0.0 0.03890270786424134 0.0 19 0.0011788699352800406 0.0 0.0 0.04479705754064154 0.0 20 0.0011788699352800406 0.0 0.0 0.04479705754064154 0.0 21 0.0011788699352800406 0.0 0.0 0.04479705754064154 0.0 22 0.0011788699352800406 0.0 0.0 0.06719558631096231 0.0 23 0.0011788699352800406 0.0 0.0 0.06837445624624235 0.0 24 0.0011788699352800406 0.0 0.0 0.08016315559904276 0.0 25 0.0011788699352800406 0.0 0.0 0.08487863534016292 0.0 26 0.0011788699352800406 0.0 0.0 0.08487863534016292 0.0 27 0.0011788699352800406 0.0 0.0 0.09902507456352341 0.0 28 0.0011788699352800406 0.0 0.0 0.11317151378688389 0.0 29 0.0011788699352800406 0.0 0.0 0.14617987197472504 0.0 30 0.0011788699352800406 0.0 0.0 0.16032631119808552 0.0 31 0.0011788699352800406 0.0 0.0 0.18744031970952646 0.0 32 0.0011788699352800406 0.0 0.0 0.22044867789736758 0.0 33 0.0011788699352800406 0.0 0.0 0.25935138576160893 0.0 34 0.0011788699352800406 0.0 0.0 0.319473752460891 0.0 35 0.0011788699352800406 0.0 0.0 0.3925636884482535 0.0 36 0.0011788699352800406 0.0 0.0 0.5481745199052188 0.0 37 0.0011788699352800406 0.0 0.0 0.8275666945665885 0.0 38 0.0011788699352800406 0.0 0.0 1.1564714065097197 0.0 39 0.0011788699352800406 0.0 0.0 1.5195633465759724 0.0 40 0.0011788699352800406 0.0 0.0 1.9121270350242259 0.0 41 0.0011788699352800406 0.0 0.0 2.3153005528899997 0.0 42 0.0011788699352800406 0.0 0.0 2.7149374609499333 0.0 43 0.0011788699352800406 0.0 0.0 3.116932108880427 0.0 44 0.0011788699352800406 0.0 0.0 3.610878611762764 0.0 45 0.0011788699352800406 0.0 0.0 4.0812477159395 0.0 46 0.0011788699352800406 0.0 0.0 4.555153429922076 0.0 47 0.0011788699352800406 0.0 0.0 4.95125372817617 0.0 48 0.0011788699352800406 0.0 0.0 5.427517182029307 0.0 49 0.0011788699352800406 0.0 0.0 5.843658269183161 0.0 50 0.0011788699352800406 0.0 0.0 6.281019015172056 0.0 51 0.0011788699352800406 0.0 0.0 6.66768835394391 0.0 52 0.0011788699352800406 0.0 0.0 7.141594067926485 0.0 53 0.0011788699352800406 0.0 0.0 7.516474707345538 0.0 54 0.0011788699352800406 0.0 0.0 7.884282127152911 0.0 55 0.0011788699352800406 0.0 0.0 8.228512148254683 0.0 56 0.0011788699352800406 0.0 0.0 8.671767243919978 0.0 57 0.0011788699352800406 0.0 0.0 9.00774517547479 0.0 58 0.0011788699352800406 0.0 0.0 9.349617456706001 0.0 59 0.0011788699352800406 0.0 0.0 9.803482381788816 0.0 60 0.0011788699352800406 0.0 0.0 10.13828144340835 0.0 61 0.0011788699352800406 0.0 0.0 10.495479033798201 0.0 62 0.0011788699352800406 0.0 0.0 10.831456965353013 0.0 63 0.0011788699352800406 0.0 0.0 11.117922359626062 0.0 64 0.0011788699352800406 0.0 0.0 11.475119950015914 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTGTCA 15 0.002217786 70.0 1 GTTCTTG 15 0.002217786 70.0 1 CTCTCGG 20 7.886413E-5 70.0 42 GTGGTAC 15 0.002217786 70.0 48 TAGATCT 140 0.0 60.0 39 TAGTGTA 30 8.313631E-6 58.333332 34 ACGACCT 30 8.313631E-6 58.333332 24 GTAGATC 145 0.0 57.931034 38 GCGCAGT 25 2.378386E-4 56.000004 58 TCGGCGG 25 2.378386E-4 56.000004 45 CTAGTGT 25 2.378386E-4 56.000004 33 TCGCCGT 45 2.66391E-8 54.444447 52 TTACGCT 45 2.66391E-8 54.444447 13 AGTGTAG 45 2.66391E-8 54.444447 35 CTTACGC 45 2.66391E-8 54.444447 12 ATCTCGT 20 0.0069299643 52.5 42 GTGTGTA 20 0.0069299643 52.5 34 CATAGGC 20 0.0069299643 52.5 53 CGCTATG 20 0.0069299643 52.5 25 TCTCGGA 20 0.0069299643 52.5 43 >>END_MODULE