SRR1779835_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779835_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	84827
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	20679	24.37785139165596	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	2536	2.989614155870183	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	1640	1.9333466938592665	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	591	0.696712131750504	Illumina PCR Primer Index 9 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	564	0.6648826434979428	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCGT	354	0.4173199570891344	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAACTCGTATGCCGT	349	0.41142560741273415	No Hit
CTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	259	0.30532731323753054	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	173	0.20394449880344703	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATATCGTATGCCGT	164	0.19333466938592667	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAGCTCGTATGCCGT	151	0.17800936022728614	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	132	0.15561083145696536	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCG	102	0.12024473339856413	No Hit
TTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	102	0.12024473339856413	No Hit
CCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	100	0.11788699352800407	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	94	0.11081377391632381	No Hit
CTTAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	88	0.10374055430464356	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAAGCA	15	0.0022190455	69.989975	67
CTGATAA	15	0.0022190455	69.989975	12
ACTCGTA	70	0.0	64.99069	38
GAACTCG	70	0.0	59.99141	36
AACTCGT	80	0.0	56.86686	37
ATCTCGT	2985	0.0	53.10797	37
TCTCGTA	2985	0.0	52.990738	38
CTCGTAT	3185	0.0	52.959442	39
GCCGTCT	3225	0.0	52.95366	46
TGCCGTC	3225	0.0	52.95366	45
CGTCTTC	3220	0.0	52.9272	48
GATCTCG	2985	0.0	52.8735	36
CCGTCTT	3225	0.0	52.84515	47
ATGCCGT	3220	0.0	52.81852	44
TATGCCG	3240	0.0	52.81651	43
TCGTATG	3255	0.0	52.788136	40
CTGCTTG	3215	0.0	52.745167	54
CGTATGC	3245	0.0	52.735126	41
AGATCTC	2975	0.0	52.698334	35
TGCTTGA	3200	0.0	52.663948	55