FastQCFastQC Report
Wed 25 May 2016
SRR1779834_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779834_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92110
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTCTGA150.00221839470.0000157
GACTCGC150.00221839470.0000111
ACGCGCG150.00221839470.0000124
GTAGATC1500.053.66666838
CGGTGGT608.185452E-1152.50000446
TAGCGGG200.00693185152.552
GATCCTA200.00693185152.51
CGACCTA200.00693185152.529
GTCTATG200.00693185152.531
CCGCTCG200.00693185152.543
GCTCTCG200.00693185152.541
AGTGCTC200.00693185152.554
CCGTAAC200.00693185152.555
TCCGTGG200.00693185152.545
GTATATC200.00693185152.530
ATTGGGG200.00693185152.534
CTTTCGT200.00693185152.517
GACGCGG200.00693185152.514
GATCTGC200.00693185152.544
GGTTAGA200.00693185152.51
Produced by FastQC (version 0.11.5)