##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779834_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 92110 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.608099012050808 32.0 21.0 34.0 12.0 34.0 2 26.614167842796657 32.0 21.0 34.0 12.0 34.0 3 26.573585929866464 33.0 21.0 34.0 11.0 34.0 4 26.69795896211052 32.0 21.0 34.0 12.0 34.0 5 26.935262186516123 34.0 21.0 34.0 11.0 34.0 6 29.120529801324505 36.0 21.0 38.0 11.0 38.0 7 29.562056237107807 36.0 21.0 38.0 12.0 38.0 8 28.934513082184345 35.0 21.0 38.0 11.0 38.0 9 29.862935620453804 36.0 22.0 38.0 11.0 38.0 10-11 28.583573987623495 34.0 21.0 38.0 11.0 38.0 12-13 29.144457713603302 35.5 21.0 38.0 11.0 38.0 14-15 28.207453045271958 34.0 21.0 38.0 11.0 38.0 16-17 28.575833242861798 35.0 21.0 38.0 11.0 38.0 18-19 29.044088589729668 35.5 21.0 38.0 11.0 38.0 20-21 28.307963304744327 33.5 21.0 38.0 11.0 38.0 22-23 28.899169471284335 35.0 21.0 38.0 11.0 38.0 24-25 29.19981000977093 35.5 21.0 38.0 11.0 38.0 26-27 28.288171751167084 34.0 21.0 38.0 11.0 38.0 28-29 28.99992400390837 35.5 21.0 38.0 11.0 38.0 30-31 29.27513842145261 37.0 21.0 38.0 11.0 38.0 32-33 29.445098252089892 37.0 21.0 38.0 11.0 38.0 34-35 29.42041580718706 36.5 21.0 38.0 11.0 38.0 36-37 29.042411247421562 35.5 21.0 38.0 11.0 38.0 38-39 28.951259363804148 35.5 21.0 38.0 11.0 38.0 40-41 28.906307675605255 35.5 21.0 38.0 11.0 38.0 42-43 29.199820866355445 36.5 21.0 38.0 11.0 38.0 44-45 29.311643686896105 36.0 21.0 38.0 11.0 38.0 46-47 29.2110574313321 36.0 21.0 38.0 11.0 38.0 48-49 28.915258929540766 35.5 21.0 38.0 11.0 38.0 50-51 28.44189555965693 35.0 21.0 38.0 11.0 38.0 52-53 28.95399522310281 35.0 21.0 38.0 11.0 38.0 54-55 28.985745304527196 35.5 21.0 38.0 11.0 38.0 56-57 29.05146021061774 36.0 21.0 38.0 11.0 38.0 58-59 29.10939094560851 36.0 21.0 38.0 11.0 38.0 60-61 29.086125284985343 36.0 21.0 38.0 11.0 38.0 62-63 29.033801975898385 36.0 21.0 38.0 11.0 38.0 64-65 29.03177722288568 36.0 21.0 38.0 11.0 38.0 66-67 29.08535989577679 36.0 21.0 38.0 11.0 38.0 68-69 28.653609814352407 34.5 21.0 38.0 11.0 38.0 70-71 28.76799478883943 34.5 21.0 38.0 11.0 38.0 72-73 28.90919009879492 35.0 21.0 38.0 11.0 38.0 74-75 28.717055694278578 35.0 21.0 38.0 11.0 38.0 76 28.088589729671046 34.0 21.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 74.0 13 700.0 14 2126.0 15 3416.0 16 4390.0 17 4921.0 18 5179.0 19 4411.0 20 3480.0 21 2431.0 22 1779.0 23 1268.0 24 1087.0 25 1026.0 26 992.0 27 1026.0 28 1084.0 29 1267.0 30 1442.0 31 1804.0 32 2388.0 33 3094.0 34 4105.0 35 6256.0 36 10643.0 37 21721.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.45814786668114 21.12799913147324 10.224731299533167 38.18912170231245 2 20.58625556399957 21.826077516013463 32.10509173813918 25.48257518184779 3 14.959287808055585 26.621430897839538 32.615351210509175 25.8039300835957 4 16.503094126587776 27.307567039409403 27.227228313972425 28.9621105200304 5 13.807404190641623 33.23417652806427 34.77581152969276 18.182607751601346 6 26.562075891645403 40.3344009554313 15.124043211552033 17.97947994137126 7 21.671389639859722 33.085784393559386 17.906039976982292 27.3367859895986 8 19.236490374697343 40.55873443285089 18.91836136415457 21.286413828297196 9 22.09904559224313 19.056667281946602 18.198894667694546 40.64539245811572 10-11 20.326911280122033 30.27865088025015 23.673653295984455 25.72078454364336 12-13 19.877863424166758 24.31006405384866 25.55205732276626 30.260015199218326 14-15 25.25906665436247 27.195349013945357 20.75247395762652 26.793110374065648 16-17 26.34093117430884 26.166682046911554 20.59993811713233 26.89244866164728 18-19 20.529927149945173 26.130478682401986 24.48836679079766 28.85122737685518 20-21 24.762240799044623 25.026055802844425 22.42047551840191 27.791227879709048 22-23 26.672637950221205 24.969193605298155 20.946719865374696 27.411448579105937 24-25 20.417447004858452 30.36343403088782 20.875607306679694 28.343511657574027 26-27 23.795306622081565 30.004831258787192 21.699951687412128 24.499910431719112 28-29 20.83525598918608 29.134614862627373 24.005059525425203 26.02506962276135 30-31 22.13506750118066 27.611158458139496 23.929127831548318 26.324646209131526 32-33 19.849093475192706 29.23623927912279 24.11627402019325 26.798393225491264 34-35 19.29745516133235 31.06733399921831 23.76395101402701 25.87125982542233 36-37 23.499071590674646 26.187115198766463 24.15601620101419 26.157797009544698 38-39 23.838607577756424 24.83482358561757 25.993365798574352 25.33320303805165 40-41 20.778212651383964 28.66890677841893 24.448340815451342 26.10453975474576 42-43 18.06989544995603 28.14708660391493 25.66361593329642 28.119402012832623 44-45 18.02986792319677 25.21782086846062 28.296355809370777 28.45595539897183 46-47 19.587438590777083 26.948945525608664 25.964226583068694 27.499389300545555 48-49 20.166105743133212 27.755943980023883 25.344696558462708 26.733253718380194 50-51 24.387132496634386 27.272875320276196 22.353107221956833 25.986884961132585 52-53 16.925440548962552 29.45733488235741 24.675084961075342 28.942139607604695 54-55 18.622527916962984 26.937629948916165 24.348151807477457 30.091690326643395 56-57 19.816929165920158 28.031771367764986 23.27692449685381 28.874374969461048 58-59 18.889323213568304 28.269107571364977 24.19894241940563 28.642626795661098 60-61 17.35424109809202 26.8854452854366 24.495314213732666 31.264999402738713 62-63 18.787865627239363 27.438600681852726 23.715011617554453 30.058522073353455 64-65 19.391129185511762 26.725378304565716 23.50239172100751 30.38110078891501 66-67 17.71083879444677 31.419636118817902 21.152018937892617 29.717506148842716 68-69 18.259245788979424 33.271269521602 20.054934615864813 28.414550073553755 70-71 17.213395072116036 31.481893636309355 21.082744806396803 30.22196648517781 72-73 17.124105659721845 29.618270055478952 20.902862974583908 32.35476131021529 74-75 17.11191335740072 28.995412719524445 23.029233734154882 30.863440188919956 76 16.076042820228867 30.597355221158228 21.783597159794148 31.543004798818753 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.5 10 1.5 11 0.0 12 0.0 13 0.5 14 1.5 15 4.0 16 12.5 17 19.0 18 24.5 19 38.0 20 60.0 21 74.0 22 95.0 23 124.0 24 200.5 25 269.0 26 350.0 27 431.0 28 512.5 29 594.0 30 700.0 31 895.0 32 1147.5 33 1311.0 34 1525.0 35 1857.0 36 2151.0 37 2327.0 38 2537.5 39 3046.5 40 3663.0 41 4171.0 42 4361.0 43 4557.0 44 4973.0 45 5228.5 46 5264.0 47 5332.0 48 5455.0 49 5325.0 50 5140.0 51 4930.0 52 4476.0 53 4066.0 54 3900.0 55 3723.0 56 3292.5 57 2860.0 58 2681.0 59 2502.0 60 2067.5 61 1699.0 62 1586.0 63 1414.0 64 1156.0 65 1018.5 66 851.0 67 735.0 68 637.0 69 524.5 70 453.0 71 396.0 72 388.0 73 335.5 74 268.5 75 246.0 76 234.5 77 197.0 78 153.5 79 136.0 80 112.0 81 71.5 82 57.5 83 60.0 84 50.0 85 36.5 86 31.0 87 29.0 88 22.0 89 14.0 90 13.5 91 8.0 92 2.0 93 3.5 94 5.5 95 6.0 96 6.0 97 4.5 98 2.0 99 2.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.005428292259255238 7 0.007599609162957334 8 0.009770926066659429 9 0.011942242970361524 10-11 0.005971121485180762 12-13 0.0 14-15 5.428292259255238E-4 16-17 5.428292259255238E-4 18-19 0.003256975355553143 20-21 0.0 22-23 0.002714146129627619 24-25 0.002714146129627619 26-27 0.0016284876777765715 28-29 0.00705677993703181 30-31 5.428292259255238E-4 32-33 0.0 34-35 0.0021713169037020953 36-37 0.01845619368146781 38-39 0.012485072196287049 40-41 0.0016284876777765715 42-43 0.0010856584518510477 44-45 0.0048854630333297145 46-47 0.002714146129627619 48-49 0.0 50-51 0.0021713169037020953 52-53 0.009770926066659429 54-55 0.00705677993703181 56-57 0.01574204755184019 58-59 0.01411355987406362 60-61 0.024970144392574098 62-63 0.008685267614808381 64-65 0.023341656714797526 66-67 0.02117033981109543 68-69 5.428292259255238E-4 70-71 0.0016284876777765715 72-73 0.003256975355553143 74-75 0.008142438388882858 76 0.004342633807404191 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 92110.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.58126153512104 #Duplication Level Percentage of deduplicated Percentage of total 1 86.34230709253036 66.12202800998806 2 6.0718184266859465 9.299750298556074 3 3.4307262649031034 7.881880360438606 4 2.0300826493145636 6.218651612202801 5 0.9484115170331306 3.631527521441755 6 0.4919264520336268 2.260340896753881 7 0.29345468464253815 1.573119096732168 8 0.14885382554331647 0.91195309955488 9 0.07797105147507052 0.5374009336662686 >10 0.16444803583833056 1.5633481706655086 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008685267614808381 0.0 2 0.0 0.0 0.0 0.009770926066659429 0.0 3 0.0 0.0 0.0 0.009770926066659429 0.0 4 0.0 0.0 0.0 0.022798827488872003 0.0 5 0.0 0.0 0.0 0.026055802844425144 0.0 6 0.0 0.0 0.0 0.026055802844425144 0.0 7 0.0 0.0 0.0 0.026055802844425144 0.0 8 0.0 0.0 0.0 0.026055802844425144 0.0 9 0.0 0.0 0.0 0.026055802844425144 0.0 10 0.0 0.0 0.0 0.026055802844425144 0.0 11 0.0 0.0 0.0 0.02822711974812724 0.0 12 0.0 0.0 0.0 0.02822711974812724 0.0 13 0.0 0.0 0.0 0.030398436651829334 0.0 14 0.0 0.0 0.0 0.034741070459233525 0.0 15 0.0 0.0 0.0 0.034741070459233525 0.0 16 0.0 0.0 0.0 0.034741070459233525 0.0 17 0.0 0.0 0.0 0.034741070459233525 0.0 18 0.0 0.0 0.0 0.041255021170339815 0.0 19 0.0 0.0 0.0 0.045597654977744005 0.0 20 0.0 0.0 0.0 0.05536858104440343 0.0 21 0.0 0.0 0.0 0.05971121485180762 0.0 22 0.0 0.0 0.0 0.07708175008142439 0.0 23 0.0 0.0 0.0 0.08251004234067963 0.0 24 0.0 0.0 0.0 0.08576701769623277 0.0 25 0.0 0.0 0.0 0.08793833459993486 0.0 26 0.0 0.0 0.0 0.0955379437628922 0.0 27 0.0 0.0 0.0 0.10856584518510477 0.0 28 0.0 0.0 0.0 0.11942242970361525 0.0 29 0.0 0.0 0.0 0.13462164802952992 0.0 30 0.0 0.0 0.0 0.159591792422104 0.0 31 0.0 0.0 0.0 0.19541852133318857 0.0 32 0.0 0.0 0.0 0.24210183476278363 0.0 33 0.0 0.0 0.0 0.28118553902942134 0.0 34 0.0 0.0 0.0 0.33329714471827165 0.0 35 0.0 0.0 0.0 0.4125502117033981 0.0 36 0.0 0.0 0.0 0.5482575181847791 0.0 37 0.0 0.0 0.0 0.7632178916512865 0.0 38 0.0 0.0 0.0 0.9944631418955596 0.0 39 0.0 0.0 0.0 1.342959504939746 0.0 40 0.0 0.0 0.0 1.7229399630876125 0.0 41 0.0 0.0 0.0 2.234285093909456 0.0 42 0.0 0.0 0.0 2.7163174465313213 0.0 43 0.0 0.0 0.0 3.144066876560634 0.0 44 0.0 0.0 0.0 3.579415915752904 0.0 45 0.0 0.0 0.0 4.109217240256215 0.0 46 0.0 0.0 0.0 4.661817392248398 0.0 47 0.0 0.0 0.0 5.1188796004776895 0.0 48 0.0 0.0 0.0 5.607425903810661 0.0 49 0.0 0.0 0.0 5.985235045054826 0.0 50 0.0 0.0 0.0 6.39344262295082 0.0 51 0.0 0.0 0.0 6.863532732602323 0.0 52 0.0 0.0 0.0 7.252198458364998 0.0 53 0.0 0.0 0.0 7.716860275757247 0.0 54 0.0 0.0 0.0 8.14569536423841 0.0 55 0.0 0.0 0.0 8.566930843556618 0.0 56 0.0 0.0 0.0 8.977309738356313 0.0 57 0.0 0.0 0.0 9.361632830311583 0.0 58 0.0 0.0 0.0 9.732928020844643 0.0 59 0.0 0.0 0.0 10.039083704266638 0.0 60 0.0 0.0 0.0 10.423406796221908 0.0 61 0.0 0.0 0.0 10.788188036043861 0.0 62 0.0 0.0 0.0 11.09760069482141 0.0 63 0.0 0.0 0.0 11.506893931169254 0.0 64 0.0 0.0 0.0 11.84453370969493 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCTCTGA 15 0.002218394 70.00001 57 GACTCGC 15 0.002218394 70.00001 11 ACGCGCG 15 0.002218394 70.00001 24 GTAGATC 150 0.0 53.666668 38 CGGTGGT 60 8.185452E-11 52.500004 46 TAGCGGG 20 0.006931851 52.5 52 GATCCTA 20 0.006931851 52.5 1 CGACCTA 20 0.006931851 52.5 29 GTCTATG 20 0.006931851 52.5 31 CCGCTCG 20 0.006931851 52.5 43 GCTCTCG 20 0.006931851 52.5 41 AGTGCTC 20 0.006931851 52.5 54 CCGTAAC 20 0.006931851 52.5 55 TCCGTGG 20 0.006931851 52.5 45 GTATATC 20 0.006931851 52.5 30 ATTGGGG 20 0.006931851 52.5 34 CTTTCGT 20 0.006931851 52.5 17 GACGCGG 20 0.006931851 52.5 14 GATCTGC 20 0.006931851 52.5 44 GGTTAGA 20 0.006931851 52.5 1 >>END_MODULE