SRR1779834_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779834_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	92110
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	23423	25.42937791770709	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	3048	3.3090869612419938	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1615	1.753338399739442	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	628	0.681793507762458	RNA PCR Primer, Index 42 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	560	0.6079687330365867	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	435	0.47226142655520575	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT	387	0.4201498208663555	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	248	0.26924329605905983	RNA PCR Primer, Index 32 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	237	0.2573010530886983	No Hit
CTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	191	0.2073607643035501	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAGCTCGTATGCCGT	178	0.19324720442948648	No Hit
CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	142	0.15416350016284877	No Hit
CCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	134	0.14547823254804038	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCG	116	0.12593638041472152	No Hit
TTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	111	0.12050808815546629	RNA PCR Primer, Index 32 (95% over 21bp)
CTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	105	0.11399413744436	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCCCTCGATCTCGTATGCCGT	98	0.10639452828140267	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATAGA	15	0.002218394	70.00001	1
CGTCTAT	15	0.002218394	70.00001	56
ACCAAGG	15	0.002218394	70.00001	2
TTCGATA	15	0.002218394	70.00001	38
CTTGACA	20	7.890018E-5	70.0	57
AGCTCGT	30	8.319301E-6	58.333336	37
GCTCGTA	30	8.319301E-6	58.333336	38
ATCTCGT	3075	0.0	53.72357	37
TCTCGTA	3070	0.0	53.697067	38
CTCGTAT	3240	0.0	53.58025	39
TCGATCT	3050	0.0	53.47541	34
GATCTCG	3065	0.0	53.442085	36
CGATCTC	3065	0.0	53.442085	35
CGTCTTC	3275	0.0	53.435112	48
GCTTGAA	3210	0.0	53.426792	56
TGCTTGA	3235	0.0	53.33848	55
CTTGAAA	3190	0.0	53.322884	57
TATGCCG	3290	0.0	53.297874	43
ATGCCGT	3290	0.0	53.297874	44
CTGCTTG	3260	0.0	53.251537	54