##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779834_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 92110 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.579253066985125 34.0 34.0 34.0 34.0 34.0 2 33.67950276842905 34.0 34.0 34.0 34.0 34.0 3 33.77711431983498 34.0 34.0 34.0 34.0 34.0 4 33.58753664097275 34.0 34.0 34.0 34.0 34.0 5 33.63846487894908 34.0 34.0 34.0 34.0 34.0 6 37.36480295299099 38.0 38.0 38.0 37.0 38.0 7 37.40242101834763 38.0 38.0 38.0 37.0 38.0 8 37.31491694712843 38.0 38.0 38.0 37.0 38.0 9 37.237856910216045 38.0 38.0 38.0 36.0 38.0 10-11 37.19031049831723 38.0 38.0 38.0 36.5 38.0 12-13 37.33171208337857 38.0 38.0 38.0 36.5 38.0 14-15 37.34260123765063 38.0 38.0 38.0 37.0 38.0 16-17 37.216431440668764 38.0 38.0 38.0 36.0 38.0 18-19 37.05009770926067 38.0 38.0 38.0 35.5 38.0 20-21 37.100293127782 38.0 38.0 38.0 35.5 38.0 22-23 37.168005645423946 38.0 38.0 38.0 36.0 38.0 24-25 37.294050591683856 38.0 38.0 38.0 36.0 38.0 26-27 37.16921615459776 38.0 37.5 38.0 36.0 38.0 28-29 36.56301161654544 38.0 37.0 38.0 34.0 38.0 30-31 36.7852784713929 38.0 37.0 38.0 35.0 38.0 32-33 36.77500814243839 38.0 37.0 38.0 35.0 38.0 34-35 36.7858918684182 38.0 37.5 38.0 35.0 38.0 36-37 36.87617522527413 38.0 37.5 38.0 35.5 38.0 38-39 35.1045163391597 38.0 36.0 38.0 29.0 38.0 40-41 36.34265009228097 38.0 37.0 38.0 34.0 38.0 42-43 37.139593963739 38.0 37.5 38.0 36.0 38.0 44-45 36.92470415807187 38.0 37.5 38.0 35.0 38.0 46-47 37.09028878514819 38.0 38.0 38.0 36.0 38.0 48-49 36.69932689175985 38.0 37.0 38.0 34.0 38.0 50-51 36.8025838671154 38.0 37.0 38.0 34.5 38.0 52-53 36.72393334057106 38.0 37.0 38.0 34.5 38.0 54-55 36.74037563782434 38.0 37.0 38.0 35.0 38.0 56-57 36.62152317880795 38.0 37.0 38.0 34.0 38.0 58-59 36.642954076647484 38.0 37.0 38.0 34.0 38.0 60-61 36.2751927043752 38.0 37.0 38.0 34.0 38.0 62-63 36.17570296384757 38.0 37.0 38.0 34.0 38.0 64-65 36.625382694604276 38.0 37.0 38.0 34.0 38.0 66-67 36.29218325914667 38.0 37.0 38.0 33.0 38.0 68-69 36.200960807729885 38.0 37.0 38.0 34.0 38.0 70-71 34.09615134078819 38.0 34.0 38.0 21.0 38.0 72-73 30.355737704918035 37.0 23.0 38.0 11.0 38.0 74-75 29.819064162414506 37.0 23.0 38.0 11.0 38.0 76 29.744870263815002 37.0 23.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 22 2.0 23 6.0 24 11.0 25 50.0 26 93.0 27 202.0 28 379.0 29 678.0 30 1102.0 31 1693.0 32 2563.0 33 4314.0 34 7745.0 35 16979.0 36 16634.0 37 39659.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.2297165200391 13.88508743347453 12.491582491582491 48.39361355490387 2 12.369992400390837 13.308001302790142 54.64444685701878 19.677559439800238 3 12.014982086635545 16.03083270003257 52.87156660514603 19.082618608185864 4 8.532189773097382 40.36478123982195 31.43958310715449 19.663445879926176 5 8.531104114645533 27.97416132884594 53.68038215177505 9.814352404733471 6 17.643035501031378 55.46846162197373 16.28161980241016 10.606883074584736 7 16.289219411573118 24.933232005211163 17.6647486700684 41.11279991314733 8 14.82792313538161 54.85832157203344 13.687981760938008 16.625773531646946 9 15.01465638909999 15.174248181522094 14.267723374226469 55.54337205515145 10-11 15.745847356421669 34.15698621213766 32.02909564650961 18.068070784931063 12-13 15.833242861795679 15.993920312669635 34.912604494625995 33.26023233090869 14-15 14.885463033329716 16.076430355010313 18.815546629030507 50.22255998262947 16-17 31.465096080772987 31.785365324069048 16.139398545217677 20.61014004994029 18-19 32.40907610465747 20.881554662903053 16.693084355661707 30.016284876777767 20-21 15.840299641732711 17.411790250787103 16.524264466398872 50.22364564108132 22-23 15.075453262403649 33.9642818369341 16.574747584409945 34.385517316252304 24-25 31.190763117610658 33.30293456665473 16.63735357022658 18.868948745508042 26-27 32.23862772771686 35.79307349907719 17.229942460102052 14.738356313103898 28-29 15.752361307132775 35.69644989686245 17.307024210183478 31.2441645858213 30-31 14.05276300075996 20.832700032569754 34.213983280859836 30.900553685810443 32-33 14.431114971230052 33.58321572033438 18.629356204538052 33.35631310389751 34-35 14.69818695038541 18.224405601997614 33.9365975464119 33.14080990120508 36-37 30.780588426880907 30.953750949951147 19.185756161111716 19.079904462056238 38-39 15.937466073173379 21.16925415264358 33.47844967973075 29.414830094452288 40-41 14.260666594289436 16.671371186624686 35.9613505591141 33.106611659971776 42-43 30.936380414721526 16.538378026272934 34.15807187058951 18.367169688416023 44-45 15.435891868418194 32.64846379329063 36.21593746607317 15.699706872218 46-47 30.680165020084683 17.41450439691673 22.065465204646618 29.83986537835197 48-49 29.443600043426336 15.976006948214092 19.063076756052546 35.517316252307026 50-51 17.121714723143658 16.016352412958145 35.55889746081556 31.303035403082635 52-53 13.383034870714464 16.202773584700758 51.51656657580661 18.897624968778167 54-55 12.656000521359445 16.664494335646864 38.23302594849403 32.44647919449966 56-57 29.604001803201225 16.361878588071715 22.148416496032414 31.885703112694646 58-59 14.583446463286162 17.146518674587576 49.249541144911326 19.02049371721494 60-61 29.09750389592055 31.95034941113229 22.82167815080878 16.130468542138384 62-63 14.1022647676862 52.12277853493259 17.408467223039708 16.366489474341503 64-65 12.869722897845726 54.08432505211953 16.769457956914525 16.276494093120224 66-67 12.636163211225387 54.29966223921283 16.24944340063208 16.814731148929702 68-69 12.660083278592408 54.10176926292473 16.28492787769882 16.953219580784033 70-71 13.11591999826272 51.6601880605442 16.44498251862147 18.77890942257161 72-73 14.303786472076533 44.514664842384164 17.575007329706484 23.606541355832817 74-75 14.890278727863013 41.29016146019957 18.274753792197355 25.544806019740058 76 14.710097719869708 42.12812160694897 17.995656894679694 25.166123778501632 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 0.5 15 10.5 16 21.0 17 21.0 18 35.0 19 62.5 20 81.5 21 87.0 22 110.5 23 161.0 24 225.0 25 262.0 26 328.0 27 449.5 28 539.5 29 574.0 30 680.0 31 800.0 32 1017.5 33 1221.0 34 1331.0 35 1530.5 36 1729.5 37 1839.0 38 2017.5 39 2641.5 40 6875.0 41 12378.5 42 14094.0 43 12984.0 44 9943.0 45 6666.5 46 5321.0 47 4775.0 48 3675.5 49 2941.5 50 2761.0 51 2602.0 52 2263.5 53 1905.0 54 1726.0 55 1634.0 56 1392.5 57 1230.0 58 1217.0 59 1047.5 60 852.5 61 753.0 62 679.0 63 638.5 64 533.0 65 472.0 66 431.5 67 387.0 68 363.5 69 333.0 70 320.0 71 314.0 72 297.5 73 244.5 74 194.5 75 181.0 76 141.0 77 90.0 78 83.0 79 87.0 80 75.0 81 59.0 82 52.0 83 49.0 84 41.0 85 24.5 86 12.0 87 8.0 88 5.5 89 3.5 90 2.5 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.043426338074041906 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0010856584518510477 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.014656389099989144 52-53 0.02931277819997829 54-55 0.04668331342959505 56-57 0.055911410270328955 58-59 0.03582672891108457 60-61 0.028769948974052762 62-63 0.027684290522201716 64-65 0.015199218325914667 66-67 0.03582672891108457 68-69 0.010313755292584954 70-71 0.013027901422212572 72-73 0.020627510585169907 74-75 0.01411355987406362 76 0.010856584518510477 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 92110.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.340571056345674 #Duplication Level Percentage of deduplicated Percentage of total 1 40.84841155402577 9.534252524155901 2 17.893855528164103 8.353056128541962 3 14.0192567096144 9.816523721637173 4 10.023722033582958 9.35837585495603 5 6.651472161495883 7.762457930734991 6 3.8745988185497002 5.4261209423515355 7 2.3070840504209498 3.7694061448268377 8 1.3209916740313503 2.4666160026055803 9 0.7814316944974186 1.641515579198784 >10 2.1675426764035537 6.977526870046684 >50 0.03721103307130564 0.6329388774291609 >100 0.05116517047304526 2.479643904027793 >500 0.00930275826782641 1.2897622407990446 >1k 0.00930275826782641 5.062425360981435 >5k 0.0 0.0 >10k+ 0.004651379133913205 25.42937791770709 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT 23423 25.42937791770709 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 3048 3.3090869612419938 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 1615 1.753338399739442 No Hit ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT 628 0.681793507762458 RNA PCR Primer, Index 42 (95% over 22bp) TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 560 0.6079687330365867 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT 435 0.47226142655520575 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT 387 0.4201498208663555 No Hit CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 248 0.26924329605905983 RNA PCR Primer, Index 32 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT 237 0.2573010530886983 No Hit CTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 191 0.2073607643035501 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGAGCTCGTATGCCGT 178 0.19324720442948648 No Hit CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 142 0.15416350016284877 No Hit CCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 134 0.14547823254804038 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCG 116 0.12593638041472152 No Hit TTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 111 0.12050808815546629 RNA PCR Primer, Index 32 (95% over 21bp) CTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 105 0.11399413744436 No Hit CTTATACACATCTCCGAGCCCACGAGACATCCCTCGATCTCGTATGCCGT 98 0.10639452828140267 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010856584518510477 0.0 2 0.0 0.0 0.0 0.011942242970361524 0.0 3 0.0 0.0 0.0 0.011942242970361524 0.0 4 0.0 0.0 0.0 0.027141461296276193 0.0 5 0.0 0.0 0.0 0.034741070459233525 0.0 6 0.0 0.0 0.0 0.034741070459233525 0.0 7 0.0 0.0 0.0 0.034741070459233525 0.0 8 0.0 0.0 0.0 0.034741070459233525 0.0 9 0.0 0.0 0.0 0.034741070459233525 0.0 10 0.0 0.0 0.0 0.034741070459233525 0.0 11 0.0 0.0 0.0 0.03799804581478667 0.0 12 0.0 0.0 0.0 0.03799804581478667 0.0 13 0.0 0.0 0.0 0.04016936271848876 0.0 14 0.0 0.0 0.0 0.04016936271848876 0.0 15 0.0 0.0 0.0 0.04016936271848876 0.0 16 0.0 0.0 0.0 0.04016936271848876 0.0 17 0.0 0.0 0.0 0.04016936271848876 0.0 18 0.0 0.0 0.0 0.04668331342959505 0.0 19 0.0 0.0 0.0 0.05102594723699924 0.0 20 0.0 0.0 0.0 0.061882531755509715 0.0 21 0.0 0.0 0.0 0.0705677993703181 0.0 22 0.0 0.0 0.0 0.08033872543697752 0.0 23 0.0 0.0 0.0 0.08359570079253067 0.0 24 0.0 0.0 0.0 0.0890239930517859 0.0 25 0.0 0.0 0.0 0.09119530995548801 0.0 26 0.0 0.0 0.0 0.09662360221474324 0.0 27 0.0 0.0 0.0 0.11182282054065791 0.0 28 0.0 0.0 0.0 0.12593638041472152 0.0 29 0.0 0.0 0.0 0.1411355987406362 0.0 30 0.0 0.0 0.0 0.1661057431332103 0.0 31 0.0 0.0 0.0 0.2117033981109543 0.0 32 0.0 0.0 0.0 0.2616436868961025 0.0 33 0.0 0.0 0.0 0.30181304961459127 0.0 34 0.0 0.0 0.0 0.3539246553034415 0.0 35 0.0 0.0 0.0 0.4364346976441212 0.0 36 0.0 0.0 0.0 0.5884268809032678 0.0 37 0.0 0.0 0.0 0.8316143741179025 0.0 38 0.0 0.0 0.0 1.070459233525133 0.0 39 0.0 0.0 0.0 1.4298121810878297 0.0 40 0.0 0.0 0.0 1.8347627836282705 0.0 41 0.0 0.0 0.0 2.365649766583433 0.0 42 0.0 0.0 0.0 2.8813375312126803 0.0 43 0.0 0.0 0.0 3.323200521116057 0.0 44 0.0 0.0 0.0 3.78243404624905 0.0 45 0.0 0.0 0.0 4.329605905981978 0.0 46 0.0 0.0 0.0 4.923461079144501 0.0 47 0.0 0.0 0.0 5.4033221148626644 0.0 48 0.0 0.0 0.0 5.922266854847465 0.0 49 0.0 0.0 0.0 6.32178916512865 0.0 50 0.0 0.0 0.0 6.7332537183801975 0.0 51 0.0 0.0 0.0 7.220714363261318 0.0 52 0.0 0.0 0.0 7.608294430572142 0.0 53 0.0 0.0 0.0 8.074041906416241 0.0 54 0.0 0.0 0.0 8.498534361090002 0.0 55 0.0 0.0 0.0 8.917598523504505 0.0 56 0.0 0.0 0.0 9.331234393659754 0.0 57 0.0 0.0 0.0 9.72967104548909 0.0 58 0.0 0.0 0.0 10.1042232113777 0.0 59 0.0 0.0 0.0 10.41580718705895 0.0 60 0.0 0.0 0.0 10.802301595917925 0.0 61 0.0 0.0 0.0 11.172511127999131 0.0 62 0.0 0.0 0.0 11.48300944522853 0.0 63 0.0 0.0 0.0 11.902073607643036 0.0 64 0.0 0.0 0.0 12.250569970687222 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATAGA 15 0.002218394 70.00001 1 CGTCTAT 15 0.002218394 70.00001 56 ACCAAGG 15 0.002218394 70.00001 2 TTCGATA 15 0.002218394 70.00001 38 CTTGACA 20 7.890018E-5 70.0 57 AGCTCGT 30 8.319301E-6 58.333336 37 GCTCGTA 30 8.319301E-6 58.333336 38 ATCTCGT 3075 0.0 53.72357 37 TCTCGTA 3070 0.0 53.697067 38 CTCGTAT 3240 0.0 53.58025 39 TCGATCT 3050 0.0 53.47541 34 GATCTCG 3065 0.0 53.442085 36 CGATCTC 3065 0.0 53.442085 35 CGTCTTC 3275 0.0 53.435112 48 GCTTGAA 3210 0.0 53.426792 56 TGCTTGA 3235 0.0 53.33848 55 CTTGAAA 3190 0.0 53.322884 57 TATGCCG 3290 0.0 53.297874 43 ATGCCGT 3290 0.0 53.297874 44 CTGCTTG 3260 0.0 53.251537 54 >>END_MODULE