##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779833_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 118213 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.420275265833705 32.0 21.0 34.0 12.0 34.0 2 26.819757556275537 33.0 21.0 34.0 12.0 34.0 3 26.529273430164196 32.0 21.0 34.0 11.0 34.0 4 27.027188211110452 32.0 21.0 34.0 12.0 34.0 5 26.992445839290095 34.0 21.0 34.0 11.0 34.0 6 29.3196348963312 36.0 21.0 38.0 11.0 38.0 7 29.718431982946036 36.0 21.0 38.0 12.0 38.0 8 29.015201373791378 35.0 21.0 38.0 11.0 38.0 9 29.914028067978986 36.0 23.0 38.0 11.0 38.0 10-11 28.66633111417526 34.0 21.0 38.0 11.0 38.0 12-13 29.166403018280562 35.0 21.0 38.0 11.0 38.0 14-15 28.187475150787137 34.0 21.0 38.0 11.0 38.0 16-17 28.533435408965175 35.0 21.0 38.0 11.0 38.0 18-19 29.00511788043616 35.5 21.0 38.0 11.0 38.0 20-21 28.22638796071498 33.0 16.0 38.0 11.0 38.0 22-23 28.846015243670323 35.0 21.0 38.0 11.0 38.0 24-25 29.166639878862732 35.5 21.0 38.0 11.0 38.0 26-27 28.261126102882084 34.0 21.0 38.0 11.0 38.0 28-29 28.959086564083478 35.0 21.0 38.0 11.0 38.0 30-31 29.195854093881383 37.0 21.0 38.0 11.0 38.0 32-33 29.342090125451517 37.0 21.0 38.0 11.0 38.0 34-35 29.310824528605146 36.5 21.0 38.0 11.0 38.0 36-37 28.94816982903742 35.5 21.0 38.0 11.0 38.0 38-39 28.877280840516697 35.5 21.0 38.0 11.0 38.0 40-41 28.88524527759214 35.5 21.0 38.0 11.0 38.0 42-43 29.14540701953254 36.5 21.0 38.0 11.0 38.0 44-45 29.24798034057168 36.0 21.0 38.0 11.0 38.0 46-47 29.1583497584868 36.0 21.0 38.0 11.0 38.0 48-49 28.848362701225753 35.5 21.0 38.0 11.0 38.0 50-51 28.390709989595052 35.0 21.0 38.0 11.0 38.0 52-53 28.8737956062362 35.0 21.0 38.0 11.0 38.0 54-55 28.928654208927952 35.5 21.0 38.0 11.0 38.0 56-57 29.01804370077741 36.0 21.0 38.0 11.0 38.0 58-59 29.0584199707308 36.5 21.0 38.0 11.0 38.0 60-61 29.07208598039133 36.0 21.0 38.0 11.0 38.0 62-63 29.000164956476866 36.0 21.0 38.0 11.0 38.0 64-65 28.97454594672329 36.5 21.0 38.0 11.0 38.0 66-67 29.006238738548213 36.0 21.0 38.0 11.0 38.0 68-69 28.665134122304654 34.5 21.0 38.0 11.0 38.0 70-71 28.75193506636326 34.5 21.0 38.0 11.0 38.0 72-73 28.807225093686817 35.0 21.0 38.0 11.0 38.0 74-75 28.699140534458984 35.5 21.0 38.0 11.0 38.0 76 28.04669537191341 34.0 20.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 75.0 13 882.0 14 2573.0 15 4274.0 16 5648.0 17 6606.0 18 6781.0 19 5931.0 20 4644.0 21 3406.0 22 2343.0 23 1686.0 24 1384.0 25 1119.0 26 1147.0 27 1207.0 28 1307.0 29 1489.0 30 1728.0 31 2177.0 32 2852.0 33 3567.0 34 5166.0 35 7528.0 36 13644.0 37 29045.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.74053395594356 21.635705342943186 14.465536493756979 33.15822420735628 2 15.539746051618689 27.9656213783594 32.181739740976035 24.31289282904587 3 13.843655097155136 28.311607014456953 32.437210797458825 25.407527090929083 4 11.422601575122872 28.971432921929058 27.860725977684346 31.74523952526372 5 11.631546445822371 35.529933256071665 34.613790361466165 18.224729936639793 6 20.719585134552098 42.15655587232567 18.655409578112973 18.468449415009264 7 20.618766021166977 33.112526754820095 18.985135741055643 27.283571482957285 8 17.709707982269144 40.986532670118095 19.175718201197846 22.128041146414915 9 19.53029162189829 19.777328448997896 19.06413651322747 41.62824341587635 10-11 19.003891379747905 31.34887065392099 24.107097538279334 25.54014042805177 12-13 18.95273342497621 25.516337104790104 26.01036269430052 29.520566775933172 14-15 24.75256319155416 27.899028863397962 20.40190505194058 26.9465028931073 16-17 25.083747842858596 26.65042466077894 21.04989341183636 27.215934084526104 18-19 19.337100703844072 27.00113359501895 24.855339740119113 28.80642596101787 20-21 24.399600720732913 26.0690448597024 22.3558322688706 27.175522150694086 22-23 25.11568297366573 25.84319564169155 21.74713013171363 27.293991252929082 24-25 19.429910455589443 30.822395831130322 21.164965590752015 28.582728122528223 26-27 23.364802219740806 30.3315230264271 22.185141948363956 24.118532805468142 28-29 20.09043763694661 29.485715252573964 24.300144666379026 26.123702444100406 30-31 21.087782223613306 28.502364376168444 23.671254430561785 26.73859896965647 32-33 19.118113566670193 29.394945542984036 24.26012477529872 27.226816115047054 34-35 19.039824038237843 30.92824059387095 23.861007127297338 26.17092824059387 36-37 23.243535941518882 26.405340462975495 24.217375118451333 26.133748477054286 38-39 22.851788871686843 25.050125631329156 26.372427095758994 25.72565840122501 40-41 20.71151828917538 28.827022637295705 24.472557777552197 25.988901295976717 42-43 17.62180498513258 28.88762937616053 25.67728182114261 27.813283817564283 44-45 17.374182578019916 25.947701912746286 27.594812489954062 29.08330301927974 46-47 19.716266459125535 27.193668867561406 25.572817751534355 27.517246921778703 48-49 19.893496430142456 27.97431732819003 25.30411464149156 26.828071600175956 50-51 24.443683090757588 27.060624902187204 22.628700496148817 25.866991510906388 52-53 16.56105381602213 29.160991209739507 24.92914491662366 29.3488100576147 54-55 18.13244220722912 27.284955901947928 24.228336964108205 30.354264926714748 56-57 19.112664080577684 27.873921816635853 23.726590888901107 29.286823213885356 58-59 18.009153898867183 28.69138162959704 24.307323965110278 28.992140506425496 60-61 16.548634379124785 27.460063627441027 24.575676041560904 31.415625951873288 62-63 17.924823607045568 27.811289149083773 24.135378419992893 30.12850882387777 64-65 18.29358062086996 27.451793314098605 23.9806580984694 30.273967966562033 66-67 17.288248881067407 31.49002055959321 21.615493303325916 29.60623725601347 68-69 17.39409960875542 33.24986782277678 20.464417891508933 28.891614676958866 70-71 16.811673892354868 31.656127736068523 20.720735962778893 30.81146240879772 72-73 16.48640760683363 29.921453013505683 21.02918970133534 32.562949678325346 74-75 16.483293359221328 29.40741022745058 22.954446432574883 31.15484998075321 76 15.897132222316218 30.814651890702986 21.395820996531597 31.8923948904492 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 0.0 11 0.0 12 0.0 13 1.0 14 1.0 15 1.0 16 4.5 17 7.0 18 6.5 19 13.5 20 35.5 21 50.0 22 55.5 23 88.0 24 171.0 25 227.0 26 260.0 27 324.0 28 411.0 29 467.0 30 663.0 31 945.0 32 1285.0 33 1539.0 34 1756.5 35 2234.0 36 2816.0 37 3138.0 38 3648.0 39 4667.0 40 5410.0 41 5982.0 42 6320.0 43 6595.0 44 7168.5 45 7735.0 46 8003.0 47 7957.5 48 7859.0 49 7395.0 50 6984.0 51 6778.0 52 6136.0 53 5347.5 54 4995.0 55 4693.5 56 3881.5 57 3109.5 58 2848.0 59 2516.5 60 2003.5 61 1637.5 62 1453.0 63 1276.5 64 1010.5 65 818.0 66 645.5 67 576.0 68 532.5 69 452.5 70 375.0 71 334.0 72 298.0 73 249.5 74 193.5 75 150.0 76 151.5 77 136.0 78 105.5 79 92.0 80 83.0 81 68.0 82 51.0 83 40.0 84 35.0 85 23.5 86 17.5 87 18.0 88 18.5 89 17.5 90 15.0 91 9.5 92 5.0 93 4.0 94 4.0 95 5.0 96 5.0 97 4.0 98 7.0 99 9.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 8.459306506052633E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.005075583903631581 7 0.008459306506052634 8 8.459306506052633E-4 9 0.010151167807263162 10-11 0.0025377919518157904 12-13 4.2296532530263165E-4 14-15 8.459306506052633E-4 16-17 8.459306506052633E-4 18-19 0.004229653253026317 20-21 0.0 22-23 0.0016918613012105266 24-25 0.0029607572771184216 26-27 8.459306506052633E-4 28-29 0.008459306506052634 30-31 0.0 32-33 4.2296532530263165E-4 34-35 0.004652618578328948 36-37 0.01776454366271053 38-39 0.008459306506052634 40-41 8.459306506052633E-4 42-43 0.0012688959759078952 44-45 0.005075583903631581 46-47 0.0029607572771184216 48-49 8.459306506052633E-4 50-51 0.0021148266265131584 52-53 0.011843029108473686 54-55 0.008882271831355265 56-57 0.013957855734986847 58-59 0.010151167807263162 60-61 0.021148266265131586 62-63 0.009305237156657896 64-65 0.020302335614526323 66-67 0.016918613012105267 68-69 4.2296532530263165E-4 70-71 4.2296532530263165E-4 72-73 0.0029607572771184216 74-75 0.009728202481960529 76 0.0025377919518157904 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 118213.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 71.47521846159052 #Duplication Level Percentage of deduplicated Percentage of total 1 87.11017480738049 62.26218774584859 2 4.460724557063899 6.376625244262475 3 2.810883741848437 6.027255885562502 4 1.9149515344466406 5.474863170717264 5 1.2793959262897519 4.572255166521448 6 0.7728450877587493 3.314356289071422 7 0.47459552862367294 2.3745273362489745 8 0.29351543914880524 1.6783264108008424 9 0.21895304936503618 1.4084745332577635 >10 0.663960328074515 6.511128217708713 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01522675171089474 0.0 2 0.0 0.0 0.0 0.02030233561452632 0.0 3 0.0 0.0 0.0 0.021994196915736848 0.0 4 0.0 0.0 0.0 0.038912809927842115 0.0 5 0.0 0.0 0.0 0.04314246318086843 0.0 6 0.0 0.0 0.0 0.04314246318086843 0.0 7 0.0 0.0 0.0 0.04314246318086843 0.0 8 0.0 0.0 0.0 0.04314246318086843 0.0 9 0.0 0.0 0.0 0.04568025513268422 0.0 10 0.0 0.0 0.0 0.04568025513268422 0.0 11 0.0 0.0 0.0 0.04568025513268422 0.0 12 0.0 0.0 0.0 0.04568025513268422 0.0 13 0.0 0.0 0.0 0.04568025513268422 0.0 14 0.0 0.0 0.0 0.04906397773510528 0.0 15 0.0 0.0 0.0 0.04906397773510528 0.0 16 0.0 0.0 0.0 0.04906397773510528 0.0 17 0.0 0.0 0.0 0.04906397773510528 0.0 18 0.0 0.0 0.0 0.04906397773510528 0.0 19 0.0 0.0 0.0 0.05160176968692107 0.0 20 0.0 0.0 0.0 0.05413956163873686 0.0 21 0.0 0.0 0.0 0.05752328424115791 0.0 22 0.0 0.0 0.0 0.06429072944600002 0.0 23 0.0 0.0 0.0 0.06429072944600002 0.0 24 0.0 0.0 0.0 0.06852038269902633 0.0 25 0.0 0.0 0.0 0.0693663133496316 0.0 26 0.0 0.0 0.0 0.0693663133496316 0.0 27 0.0 0.0 0.0 0.07951748115689476 0.0 28 0.0 0.0 0.0 0.09305237156657897 0.0 29 0.0 0.0 0.0 0.1108169152292895 0.0 30 0.0 0.0 0.0 0.14042448800047372 0.0 31 0.0 0.0 0.0 0.15988089296439478 0.0 32 0.0 0.0 0.0 0.18779660443436846 0.0 33 0.0 0.0 0.0 0.22078789980797375 0.0 34 0.0 0.0 0.0 0.28507862925397376 0.0 35 0.0 0.0 0.0 0.3510612200011843 0.0 36 0.0 0.0 0.0 0.48218047084500015 0.0 37 0.0 0.0 0.0 0.757953862942316 0.0 38 0.0 0.0 0.0 1.1487738235219476 0.0 39 0.0 0.0 0.0 1.5362100614991583 0.0 40 0.0 0.0 0.0 2.026003908199606 0.0 41 0.0 0.0 0.0 2.5521727728760797 0.0 42 0.0 0.0 0.0 3.025048006564422 0.0 43 0.0 0.0 0.0 3.459856360975527 0.0 44 0.0 0.0 0.0 4.018170590375001 0.0 45 0.0 0.0 0.0 4.711833723871317 0.0 46 0.0 0.0 0.0 5.317520069704686 0.0 47 0.0 0.0 0.0 5.894444773417475 0.0 48 0.0 0.0 0.0 6.442607835009686 0.0 49 0.0 0.0 0.0 6.9966924111561335 0.0 50 8.459306506052634E-4 0.0 0.0 7.550776987302581 0.0 51 8.459306506052634E-4 0.0 0.0 8.086251089135713 0.0 52 8.459306506052634E-4 0.0 0.0 8.571815282583135 0.0 53 8.459306506052634E-4 0.0 0.0 9.07091436644024 0.0 54 8.459306506052634E-4 0.0 0.0 9.559016351839476 0.0 55 8.459306506052634E-4 0.0 0.0 9.986211330395134 0.0 56 8.459306506052634E-4 0.0 0.0 10.498845304661923 0.0 57 8.459306506052634E-4 0.0 0.0 10.997944388519029 0.0 58 8.459306506052634E-4 0.0 0.0 11.501273125629162 0.0 59 8.459306506052634E-4 0.0 0.0 11.843875039124292 0.0 60 8.459306506052634E-4 0.0 0.0 12.25499733531845 0.0 61 8.459306506052634E-4 0.0 0.0 12.694881273633188 0.0 62 8.459306506052634E-4 0.0 0.0 13.068782621200715 0.0 63 8.459306506052634E-4 0.0 0.0 13.51966365797332 0.0 64 8.459306506052634E-4 0.0 0.0 13.913867341155372 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCGG 15 0.0022188365 70.00888 45 CGGCCGA 15 0.002222565 69.97927 18 CATTGGG 15 0.002222565 69.97927 1 CGTGACA 15 0.002222565 69.97927 19 CTCGGTG 50 1.4551915E-11 63.008003 44 TCGGTGG 65 0.0 59.23829 45 GCCGTAT 55 3.45608E-11 57.280003 54 GTGTCGA 25 2.3807428E-4 56.007114 36 GTCGTTA 25 2.3807428E-4 56.007114 64 ACGTTGC 25 2.3857289E-4 55.983418 15 CGGTGGT 70 0.0 55.00698 46 TGGTCGC 70 0.0 55.00698 49 TCTCGGT 90 0.0 54.45136 43 CTTCCGA 45 2.6820999E-8 54.428326 18 ACGCTTC 45 2.6820999E-8 54.428326 15 GTAGATC 170 0.0 53.53621 38 CCGATAT 20 0.006933206 52.506664 28 CATGACG 20 0.006933206 52.506664 11 TGGCCGC 20 0.006933206 52.506664 49 GGGGTAC 20 0.006933206 52.506664 35 >>END_MODULE