SRR1779832_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779832_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	117348
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	22526	19.19589596754951	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	2663	2.269318607901285	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1461	1.245014827691993	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	560	0.4772130756382725	Illumina PCR Primer Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	554	0.472100078399291	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT	454	0.3868834577495995	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT	389	0.3314926543273	No Hit
CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	248	0.21133721921123497	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAGCTCGTATGCCGT	199	0.1695810750928861	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATATCGTATGCCGT	174	0.14827691993046324	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	170	0.14486825510447557	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	154	0.13123359580052493	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCTG	20	7.874243E-5	70.04437	47
GCGGTCT	15	0.002214338	70.044365	55
GACGTCT	15	0.002214338	70.044365	47
ACGTCTT	15	0.002214338	70.044365	48
CAACGAG	20	7.907602E-5	69.98466	20
GTCGCTC	15	0.002221845	69.98465	27
GACCGAC	15	0.002221845	69.98465	7
TGACACG	15	0.002221845	69.98465	14
TGCTACG	15	0.002221845	69.98465	30
CGAGACA	15	0.002221845	69.98465	23
CATGAAC	25	2.3847475E-4	55.98772	19
CCAACGA	25	2.3847475E-4	55.98772	19
ATCTCGT	3075	0.0	55.19115	37
TCTCGTA	3075	0.0	55.19115	38
GATCTCG	3065	0.0	54.800385	36
GCCGTCT	3280	0.0	54.668774	46
CTCGTAT	3285	0.0	54.64555	39
TATGCCG	3300	0.0	54.609234	43
CCGTCTT	3270	0.0	54.514656	47
CGTATGC	3325	0.0	54.51436	41