##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779832_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 117348 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.6035552374135 34.0 34.0 34.0 34.0 34.0 2 33.67180522889184 34.0 34.0 34.0 34.0 34.0 3 33.77652793400825 34.0 34.0 34.0 34.0 34.0 4 33.57210178273171 34.0 34.0 34.0 34.0 34.0 5 33.63390087602686 34.0 34.0 34.0 34.0 34.0 6 37.34233220847394 38.0 38.0 38.0 37.0 38.0 7 37.379265091863516 38.0 38.0 38.0 37.0 38.0 8 37.27617002420152 38.0 38.0 38.0 36.0 38.0 9 37.22200634011658 38.0 38.0 38.0 36.0 38.0 10-11 37.15334304802809 38.0 38.0 38.0 36.0 38.0 12-13 37.30751269727648 38.0 38.0 38.0 36.5 38.0 14-15 37.331002658758564 38.0 38.0 38.0 36.5 38.0 16-17 37.222781811364484 38.0 38.0 38.0 36.0 38.0 18-19 37.06332873163582 38.0 38.0 38.0 35.5 38.0 20-21 37.11393462180864 38.0 38.0 38.0 36.0 38.0 22-23 37.10459488018543 38.0 38.0 38.0 36.0 38.0 24-25 37.250438865596344 38.0 38.0 38.0 36.0 38.0 26-27 37.17460459488018 38.0 38.0 38.0 36.0 38.0 28-29 36.72495057436002 38.0 37.0 38.0 34.0 38.0 30-31 36.93272147799707 38.0 37.5 38.0 35.5 38.0 32-33 36.957020997375324 38.0 38.0 38.0 36.0 38.0 34-35 36.92876742679892 38.0 38.0 38.0 36.0 38.0 36-37 36.952606776425675 38.0 38.0 38.0 35.5 38.0 38-39 35.724626751201555 38.0 36.5 38.0 32.0 38.0 40-41 36.60295872106896 38.0 37.0 38.0 34.5 38.0 42-43 37.146875106520774 38.0 38.0 38.0 36.0 38.0 44-45 36.934114769744696 38.0 37.5 38.0 35.0 38.0 46-47 37.087125472952245 38.0 38.0 38.0 36.0 38.0 48-49 36.69599396666325 38.0 37.0 38.0 34.5 38.0 50-51 36.83867641544806 38.0 37.5 38.0 35.0 38.0 52-53 36.76093755326039 38.0 37.0 38.0 34.5 38.0 54-55 36.757136891979414 38.0 37.0 38.0 35.0 38.0 56-57 36.64338548590517 38.0 37.0 38.0 34.5 38.0 58-59 36.69831185874493 38.0 37.0 38.0 34.5 38.0 60-61 36.3463544329686 38.0 37.0 38.0 34.0 38.0 62-63 36.20304990285305 38.0 37.0 38.0 34.0 38.0 64-65 36.60997204894842 38.0 37.0 38.0 34.0 38.0 66-67 36.32478610628217 38.0 37.0 38.0 33.5 38.0 68-69 36.31286004022225 38.0 37.0 38.0 34.0 38.0 70-71 34.74357466680301 38.0 35.5 38.0 26.5 38.0 72-73 31.989769744691003 38.0 27.0 38.0 11.0 38.0 74-75 31.59559174421379 38.0 25.0 38.0 11.0 38.0 76 31.480902955312406 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 22 4.0 23 10.0 24 28.0 25 72.0 26 145.0 27 236.0 28 388.0 29 764.0 30 1271.0 31 1943.0 32 3023.0 33 4740.0 34 8487.0 35 17840.0 36 20436.0 37 57961.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.13923748465421 13.134292729504843 10.868230800709316 42.85823898513163 2 16.53372873845315 14.376043903602959 46.54872686368749 22.5415004942564 3 15.382452193475816 15.435286498278625 45.78348161025326 23.398779697992296 4 11.193203122336982 33.43218461328698 29.92211200872618 25.452500255649863 5 11.894535910283942 27.06309438592903 47.73068139209872 13.311688311688311 6 23.87258410880458 48.1218256808808 15.621058731294951 12.38453147901967 7 22.630977945938575 24.348945018236357 16.575484882571498 36.444592153253566 8 19.813716467259773 47.70511640590381 14.174932678869686 18.306234447966734 9 18.43320721273477 15.558850598220678 14.69901489586529 51.308927293179266 10-11 19.94154139823431 30.349899444387635 29.07846746429424 20.63009169308382 12-13 19.852063946552136 16.681579575280363 31.55741895899376 31.90893751917374 14-15 18.29302587176603 16.700327231823294 18.50521525718376 46.501431639226915 16-17 30.528854347751988 29.778948086034703 17.432338003204144 22.25985956300917 18-19 31.31838633807138 21.1047482701026 17.88100351092477 29.695861880901255 20-21 19.139226914817467 18.50052834304803 17.830299621638204 44.5299451204963 22-23 18.298991035211507 30.910198725159354 17.95088113985752 32.83992909977162 24-25 30.67667122581415 30.867132807540067 17.918301781476227 20.537894185169563 26-27 31.12792719091932 31.905102771244504 18.607049118860143 18.359920918976037 28-29 18.845655656679277 20.866567815386713 29.80664348774585 30.48113304018816 30-31 28.827930599584146 18.00328936155708 33.84718955585097 19.321590483007807 32-33 20.304564202202 18.785577939121247 30.855234004840305 30.054623853836453 34-35 17.579336673824862 41.84689981934076 21.65439547329311 18.91936803354126 36-37 30.015424208337592 33.03124041313018 18.620257695060843 18.333077683471384 38-39 18.926611446296484 21.16567815386713 30.721869993523537 29.185840406312845 40-41 17.719091931690357 18.006271943279817 32.39509833998023 31.879537785049592 42-43 29.67596241931017 17.829523424018408 31.793604465369945 20.700909691301476 44-45 18.26234788833214 29.545028462351297 33.263881787503834 18.92874186181273 46-47 29.360960561747962 18.39997273068139 22.774141868630057 29.464924838940586 48-49 28.29745713603981 17.382060197020827 20.665030507550192 33.655452159389164 50-51 18.609368607663985 17.813309695895267 32.67165552979681 30.905666166643936 52-53 16.293937882798215 17.813409711833124 44.968694191909506 20.923958213459155 54-55 15.967565217020589 17.979817788824324 34.89766075638528 31.15495623776981 56-57 28.068612068083365 17.51714022580755 23.161902650339393 31.25234505576969 58-59 17.01796636900322 18.503868204002472 42.92065386500714 21.55751156198717 60-61 27.813203300825208 29.942286708040644 22.778421878196824 19.466088112937324 62-63 16.721294705839732 44.689003780629704 19.07662275112204 19.51307876240852 64-65 15.525838042394332 46.353780459740726 18.38110579832434 19.739275699540602 66-67 15.561049423499075 46.35195328317811 17.857675667611517 20.229321625711304 68-69 16.0485778203899 46.13145839991478 17.771812080536915 20.04815169915841 70-71 16.367510440637517 44.05650728713884 18.225943918861333 21.35003835336231 72-73 16.967413632915385 38.2597874172129 19.480646783555947 25.292152166315773 74-75 17.825638578039904 35.707954419548116 20.418729917924505 26.047677084487475 76 17.91196147781992 36.880726126049346 19.472450675416543 25.734861720714193 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 5.5 16 9.5 17 8.0 18 18.0 19 38.5 20 52.5 21 56.0 22 80.0 23 126.0 24 200.5 25 253.0 26 298.5 27 429.5 28 565.0 29 615.0 30 651.5 31 801.0 32 1115.0 33 1316.0 34 1424.5 35 1807.5 36 2150.5 37 2219.0 38 2545.0 39 6611.5 40 12015.5 41 12694.0 42 11709.0 43 10157.5 44 7353.0 45 5518.0 46 4936.0 47 4766.0 48 4342.5 49 4014.0 50 3939.0 51 3758.0 52 3387.0 53 3176.0 54 3155.0 55 3172.0 56 2915.5 57 2528.0 58 2414.0 59 2246.5 60 2037.0 61 1854.0 62 1713.0 63 1580.5 64 1410.5 65 1301.5 66 1185.0 67 1140.0 68 1035.5 69 901.5 70 801.5 71 731.0 72 712.0 73 617.0 74 522.5 75 504.0 76 484.0 77 416.0 78 348.5 79 329.0 80 299.0 81 231.5 82 179.5 83 165.0 84 149.0 85 105.5 86 83.5 87 89.0 88 66.0 89 30.5 90 15.5 91 6.5 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04431264273783959 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0012782493097453728 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 4.2608310324845753E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.017043324129938302 52-53 0.03195623274363432 54-55 0.05666905273204486 56-57 0.06817329651975321 58-59 0.03877356239560964 60-61 0.03749531308586427 62-63 0.033660565156628144 64-65 0.017895490336435216 66-67 0.03877356239560964 68-69 0.008947745168217608 70-71 0.015338991716944472 72-73 0.02471281998841054 74-75 0.01448682551044756 76 0.011078160684459897 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 117348.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.85946074922453 #Duplication Level Percentage of deduplicated Percentage of total 1 42.41126793834524 12.239663223915192 2 18.93049075769208 10.926475099703445 3 13.978621626409968 12.10246446466919 4 10.030709265930431 11.579234413880084 5 6.584775290852182 9.501653202440604 6 3.502037441681923 6.064014725432048 7 1.925234748715526 3.8892865664519207 8 1.039390539183842 2.3997000374953132 9 0.5905628063544558 1.5338991716944472 >10 0.9330892340400401 3.74867914237993 >50 0.032480954349495064 0.643385485905171 >100 0.026575326285950513 1.7120019088523026 >500 0.005905628063544558 0.9493131540375634 >1k 0.005905628063544558 3.514333435593278 >5k 0.0 0.0 >10k+ 0.002952814031772279 19.19589596754951 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT 22526 19.19589596754951 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 2663 2.269318607901285 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 1461 1.245014827691993 No Hit ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT 560 0.4772130756382725 Illumina PCR Primer Index 9 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 554 0.472100078399291 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT 454 0.3868834577495995 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT 389 0.3314926543273 No Hit CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 248 0.21133721921123497 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAGCTCGTATGCCGT 199 0.1695810750928861 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATATCGTATGCCGT 174 0.14827691993046324 No Hit CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 170 0.14486825510447557 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 154 0.13123359580052493 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0042608310324845754 0.0 2 0.0 0.0 0.0 0.0042608310324845754 0.0 3 0.0 0.0 0.0 0.005112997238981491 0.0 4 0.0 0.0 0.0 0.007669495858472236 0.0 5 0.0 0.0 0.0 0.016191157923441387 0.0 6 0.0 0.0 0.0 0.016191157923441387 0.0 7 0.0 0.0 0.0 0.017043324129938302 0.0 8 0.0 0.0 0.0 0.017043324129938302 0.0 9 0.0 0.0 0.0 0.022156321368919794 0.0 10 0.0 0.0 0.0 0.023860653781913623 0.0 11 0.0 0.0 0.0 0.025564986194907456 0.0 12 0.0 0.0 0.0 0.027269318607901286 0.0 13 0.0 0.0 0.0 0.0281214848143982 0.0 14 0.0 0.0 0.0 0.028973651020895115 0.0 15 0.0 0.0 0.0 0.028973651020895115 0.0 16 0.0 0.0 0.0 0.028973651020895115 0.0 17 0.0 0.0 0.0 0.028973651020895115 0.0 18 0.0 0.0 0.0 0.028973651020895115 0.0 19 0.0 0.0 0.0 0.032382315846882774 0.0 20 0.0 0.0 0.0 0.03323448205337969 0.0 21 0.0 0.0 0.0 0.03493881446637352 0.0 22 0.0 0.0 0.0 0.03493881446637352 0.0 23 0.0 0.0 0.0 0.0391996454988581 0.0 24 0.0 0.0 0.0 0.04005181170535501 0.0 25 0.0 0.0 0.0 0.04431264273783959 0.0 26 0.0 0.0 0.0 0.050277806183317994 0.0 27 0.0 0.0 0.0 0.06135596686777789 0.0 28 0.0 0.0 0.0 0.08692095306268535 0.0 29 0.0 0.0 0.0 0.12100760132256196 0.0 30 0.0 0.0 0.0 0.20025905852677506 0.0 31 0.0 0.0 0.0 0.2420152026451239 0.0 32 0.0 0.0 0.0 0.2863278453829635 0.0 33 0.0 0.0 0.0 0.3246753246753247 0.0 34 0.0 0.0 0.0 0.39114428878208407 0.0 35 0.0 0.0 0.0 0.4959607321812046 0.0 36 0.0 0.0 0.0 0.6476463169376555 0.0 37 0.0 0.0 0.0 1.0004431264273783 0.0 38 0.0 0.0 0.0 1.3285271159286907 0.0 39 0.0 0.0 0.0 1.73756689504721 0.0 40 0.0 0.0 0.0 2.191771483110066 0.0 41 0.0 0.0 0.0 2.714149367692675 0.0 42 0.0 0.0 0.0 3.2995875515560553 0.0 43 0.0 0.0 0.0 3.8730954085284792 0.0 44 0.0 0.0 0.0 4.362238811057709 0.0 45 0.0 0.0 0.0 5.003067798343389 0.0 46 0.0 0.0 0.0 5.637079455977093 0.0 47 0.0 0.0 0.0 6.193543988819579 0.0 48 0.0 0.0 0.0 6.778130006476463 0.0 49 0.0 0.0 0.0 7.225517264887344 0.0 50 0.0 0.0 0.0 7.672904523298224 0.0 51 0.0 0.0 0.0 8.146708934110508 0.0 52 0.0 0.0 0.0 8.584722364249924 0.0 53 0.0 0.0 0.0 9.120734908136482 0.0 54 0.0 0.0 0.0 9.717251252684324 0.0 55 0.0 0.0 0.0 10.253263796570883 0.0 56 0.0 0.0 0.0 10.76541568667553 0.0 57 0.0 0.0 0.0 11.210246446466918 0.0 58 0.0 0.0 0.0 11.567304086989127 0.0 59 0.0 0.0 0.0 11.91754439785936 0.0 60 0.0 0.0 0.0 12.313801683880424 0.0 61 0.0 0.0 0.0 12.66830282578314 0.0 62 0.0 0.0 0.0 13.050925452500255 0.0 63 0.0 0.0 0.0 13.407130926815967 0.0 64 0.0 0.0 0.0 13.822135869379965 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTCTG 20 7.874243E-5 70.04437 47 GCGGTCT 15 0.002214338 70.044365 55 GACGTCT 15 0.002214338 70.044365 47 ACGTCTT 15 0.002214338 70.044365 48 CAACGAG 20 7.907602E-5 69.98466 20 GTCGCTC 15 0.002221845 69.98465 27 GACCGAC 15 0.002221845 69.98465 7 TGACACG 15 0.002221845 69.98465 14 TGCTACG 15 0.002221845 69.98465 30 CGAGACA 15 0.002221845 69.98465 23 CATGAAC 25 2.3847475E-4 55.98772 19 CCAACGA 25 2.3847475E-4 55.98772 19 ATCTCGT 3075 0.0 55.19115 37 TCTCGTA 3075 0.0 55.19115 38 GATCTCG 3065 0.0 54.800385 36 GCCGTCT 3280 0.0 54.668774 46 CTCGTAT 3285 0.0 54.64555 39 TATGCCG 3300 0.0 54.609234 43 CCGTCTT 3270 0.0 54.514656 47 CGTATGC 3325 0.0 54.51436 41 >>END_MODULE