##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779831_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 51566 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.33194352868169 23.0 12.0 32.0 12.0 34.0 2 22.880890509250282 23.0 12.0 33.0 12.0 34.0 3 22.447058139083893 23.0 11.0 34.0 11.0 34.0 4 22.716615599425978 23.0 12.0 34.0 12.0 34.0 5 22.154694954039485 23.0 11.0 34.0 11.0 34.0 6 24.911472675794126 26.0 12.0 36.0 11.0 38.0 7 25.131501376876237 26.0 12.0 37.0 11.0 38.0 8 24.523271147655432 26.0 11.0 37.0 11.0 38.0 9 25.376333242834427 27.0 12.0 37.0 11.0 38.0 10-11 24.391391614629796 26.0 11.5 36.0 11.0 38.0 12-13 24.514272970561997 26.0 11.0 36.5 11.0 38.0 14-15 23.81500407245084 25.5 11.0 34.5 11.0 38.0 16-17 23.956550828065005 24.5 11.0 35.5 11.0 38.0 18-19 23.828918279486484 23.5 11.0 36.5 11.0 38.0 20-21 23.86226389481441 24.5 11.0 35.0 10.5 38.0 22-23 24.039211883799403 24.5 11.0 36.5 10.5 38.0 24-25 24.227000349067215 25.0 11.0 36.5 10.0 38.0 26-27 23.513506961951673 23.0 11.0 35.5 10.0 38.0 28-29 23.612079664895475 23.0 11.0 36.5 10.5 38.0 30-31 23.777886591940426 24.0 11.0 37.0 11.0 38.0 32-33 24.002734359849512 25.0 11.0 37.0 11.0 38.0 34-35 24.111798471861306 26.0 11.0 37.0 11.0 38.0 36-37 23.861090641120118 24.5 11.0 36.5 11.0 38.0 38-39 23.64763603925067 23.5 11.0 36.5 11.0 38.0 40-41 23.631336539580346 23.5 11.0 36.0 11.0 38.0 42-43 23.82702749873948 24.0 11.0 36.5 11.0 38.0 44-45 23.996771128262807 25.0 11.0 37.0 11.0 38.0 46-47 23.876556257999457 24.5 11.0 36.5 11.0 38.0 48-49 23.502472559438388 23.5 11.0 36.0 11.0 38.0 50-51 23.244356746693555 23.0 11.0 35.0 11.0 38.0 52-53 23.6790520885855 23.5 11.0 36.0 11.0 38.0 54-55 23.629930574409496 23.0 11.0 36.0 11.0 38.0 56-57 23.622832874374588 23.5 11.0 36.0 11.0 38.0 58-59 23.53240507311019 23.0 11.0 37.0 11.0 38.0 60-61 23.768170887794284 24.0 11.0 36.5 11.0 38.0 62-63 23.462455881782567 23.0 11.0 36.0 11.0 38.0 64-65 23.45560058953574 23.5 11.0 36.5 11.0 38.0 66-67 23.801594073614396 24.0 11.0 36.0 11.0 38.0 68-69 23.53353954155839 23.5 11.0 36.0 11.0 38.0 70-71 23.78162936818834 24.0 11.0 36.0 11.0 38.0 72-73 23.74772136679207 24.0 11.0 36.0 11.0 38.0 74-75 23.343365783655898 23.0 11.0 35.5 11.0 38.0 76 22.969049373618276 23.0 11.0 34.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 65.0 13 555.0 14 1935.0 15 3380.0 16 4475.0 17 5112.0 18 5204.0 19 4517.0 20 3419.0 21 2389.0 22 1543.0 23 1106.0 24 833.0 25 628.0 26 565.0 27 477.0 28 511.0 29 450.0 30 559.0 31 605.0 32 749.0 33 970.0 34 1296.0 35 1802.0 36 3046.0 37 5373.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.26384175312712 20.486764278095606 9.615048967322796 46.63434500145448 2 11.959430632587363 21.622774696505452 27.933134235736727 38.48466043517046 3 19.679633867276888 20.428189116859947 32.874374587906765 27.017802427956404 4 20.164449443431717 31.687546057479736 19.080401815149518 29.067602683939032 5 11.274871039056743 27.12252259240585 26.040414226428265 35.56219214210914 6 17.697707791955942 46.257223752084705 11.044098824807042 25.00096963115231 7 15.843773028739868 37.72253034945507 12.242562929061783 34.19113369274328 8 14.56082850105696 43.244186723037835 16.754261776855497 25.440722999049708 9 19.738551950192985 21.590798890591362 13.299326984619562 45.371322174596095 10-11 15.57981905805463 33.65655938793915 20.84614116574709 29.917480388259136 12-13 15.469495403948338 24.131210487530545 24.718806965830197 35.68048714269092 14-15 26.36911918706124 28.06985222821239 17.808245743319244 27.752782841407132 16-17 28.972578831012687 24.273746266920064 16.31598339991467 30.437691502152582 18-19 20.17143244999079 23.777525671233672 21.585168378082244 34.46587350069329 20-21 26.043323119885198 23.497071713920025 18.338633983632626 32.12097118256215 22-23 28.978958595946864 22.62969068166392 16.723552797440124 31.66779792494909 24-25 19.6365716723715 31.930882680914195 15.308012295280667 33.12453335143364 26-27 24.475429546600473 32.178179420548425 17.709343365783656 25.63704766706745 28-29 20.682098077053617 29.65002957633118 21.29592816345529 28.371944183159915 30-31 22.205523019043554 26.637707016251017 21.969902649032306 29.18686731567312 32-33 17.675577663360194 30.262481698034538 22.58486778951043 29.477072849094842 34-35 16.519926306603317 34.95878987685445 20.383011732764473 28.138272083777753 36-37 23.860649616417895 25.4483206765787 21.392339996314508 29.298689710688897 38-39 25.190795279332047 22.34559401091921 25.08218500596387 27.381425703784874 40-41 19.45311742460972 29.449238824784253 22.15941045282653 28.938233297779504 42-43 14.614564142344614 28.216813730243384 24.43711820032968 32.73150392708232 44-45 14.326025192238696 23.69214657655124 29.17761594926644 32.80421228194362 46-47 17.578784058954717 27.39552021720159 24.69019683894114 30.335498884902552 48-49 18.891690099873944 28.43207602055658 22.83040822263163 29.845825656937848 50-51 25.80773407803894 27.81882708866651 17.748817004111395 28.62462182918315 52-53 13.16026803463892 31.605589550140127 22.104130099591742 33.130012315629216 54-55 16.07160172992262 26.44628900568237 21.920757132052053 35.56135213234296 56-57 18.919102387556002 28.72825306929925 19.256579840570996 33.09606470257375 58-59 17.19245502594191 29.279930175047276 20.277360228870677 33.250254570140136 60-61 13.940698926295575 26.34795006837955 21.96098970912018 37.750361296204694 62-63 17.158013149983514 27.692546403149787 20.708314746213077 34.44112570065362 64-65 17.853921578135758 26.14999660553395 19.95461113966773 36.04147067666256 66-67 14.787011173184359 34.859947237740535 16.07988050900062 34.27316108007449 68-69 16.064190827111414 37.524483661398236 14.698923688548435 31.712401822941917 70-71 13.810724328517404 34.75710268593038 16.104916125278773 35.327256860273444 72-73 13.231900079517464 31.711952832567253 16.1304086421908 38.925738445724484 74-75 13.619612863183212 30.32894992047791 20.458512742930292 35.59292447340859 76 11.905362164258703 34.253854358576554 17.5254533113546 36.315330165810146 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.0 4 2.0 5 1.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.5 15 4.0 16 9.0 17 13.0 18 13.5 19 17.0 20 24.0 21 28.0 22 29.0 23 47.0 24 78.0 25 92.0 26 107.5 27 143.0 28 200.5 29 238.0 30 256.0 31 317.0 32 421.0 33 482.0 34 508.5 35 595.0 36 772.0 37 889.0 38 1005.0 39 1221.5 40 1392.5 41 1615.0 42 1767.0 43 1889.5 44 2218.5 45 2463.5 46 2502.0 47 2673.5 48 2891.5 49 2931.5 50 2925.0 51 2981.5 52 2949.5 53 2821.5 54 2782.0 55 2661.5 56 2460.0 57 2231.0 58 2083.0 59 1965.5 60 1685.5 61 1435.5 62 1348.0 63 1264.0 64 1056.0 65 872.5 66 734.0 67 655.0 68 566.0 69 441.0 70 362.0 71 319.0 72 300.5 73 224.5 74 159.5 75 152.0 76 122.0 77 98.5 78 84.0 79 63.0 80 54.5 81 46.0 82 33.0 83 20.0 84 21.0 85 18.0 86 13.5 87 13.0 88 13.0 89 11.0 90 7.5 91 5.5 92 5.0 93 3.5 94 2.5 95 1.5 96 0.0 97 1.0 98 4.0 99 5.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0019392623046193228 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.005817786913857969 9 0.01357483613233526 10-11 0.004848155761548307 12-13 0.0 14-15 0.0 16-17 0.0 18-19 9.696311523096614E-4 20-21 0.0 22-23 0.0019392623046193228 24-25 0.0029088934569289843 26-27 0.0 28-29 0.008726680370786954 30-31 0.0 32-33 9.696311523096614E-4 34-35 0.0019392623046193228 36-37 0.024240778807741534 38-39 0.010665942675406275 40-41 0.0019392623046193228 42-43 0.0019392623046193228 44-45 0.004848155761548307 46-47 0.0019392623046193228 48-49 0.0019392623046193228 50-51 0.0038785246092386456 52-53 0.010665942675406275 54-55 0.005817786913857969 56-57 0.01357483613233526 58-59 0.016483729589264244 60-61 0.0300585657215995 62-63 0.01357483613233526 64-65 0.022301516503122214 66-67 0.02714967226467052 68-69 0.0019392623046193228 70-71 0.0019392623046193228 72-73 0.009696311523096614 74-75 0.015514098436954582 76 0.0019392623046193228 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 51566.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.25714618159252 #Duplication Level Percentage of deduplicated Percentage of total 1 94.59627863005457 85.37990148547493 2 2.5761677624511194 4.650351006477136 3 1.4180739976795154 3.839739363146259 4 0.7820892956899145 2.823565915525734 5 0.3502213054875167 1.5804987782647482 6 0.1589961754974002 0.8610324632509794 7 0.07090369988397577 0.4479695923670635 8 0.03008035752653517 0.21719737811736417 9 0.01074298483090542 0.08726680370786953 >10 0.006445790898543251 0.11247721366792073 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013574836132335259 0.0 2 0.0 0.0 0.0 0.013574836132335259 0.0 3 0.0 0.0 0.0 0.013574836132335259 0.0 4 0.0 0.0 0.0 0.017453360741573904 0.0 5 0.0 0.0 0.0 0.027149672264670518 0.0 6 0.0 0.0 0.0 0.027149672264670518 0.0 7 0.0 0.0 0.0 0.027149672264670518 0.0 8 0.0 0.0 0.0 0.02908893456928984 0.0 9 0.0 0.0 0.0 0.02908893456928984 0.0 10 0.0 0.0 0.0 0.036845983787767135 0.0 11 0.0 0.0 0.0 0.036845983787767135 0.0 12 0.0 0.0 0.0 0.0426637707016251 0.0 13 0.0 0.0 0.0 0.0426637707016251 0.0 14 0.0 0.0 0.0 0.0426637707016251 0.0 15 0.0 0.0 0.0 0.0426637707016251 0.0 16 0.0 0.0 0.0 0.0426637707016251 0.0 17 0.0 0.0 0.0 0.0426637707016251 0.0 18 0.0 0.0 0.0 0.04654229531086375 0.0 19 0.0 0.0 0.0 0.04848155761548307 0.0 20 0.0 0.0 0.0 0.05817786913857968 0.0 21 0.0 0.0 0.0 0.06205639374781833 0.0 22 0.0 0.0 0.0 0.07757049218477291 0.0 23 0.0 0.0 0.0 0.08144901679401156 0.0 24 0.0 0.0 0.0 0.10859868905868207 0.0 25 0.0 0.0 0.0 0.10859868905868207 0.0 26 0.0 0.0 0.0 0.10859868905868207 0.0 27 0.0 0.0 0.0 0.13186983671411395 0.0 28 0.0 0.0 0.0 0.13962688593259123 0.0 29 0.0 0.0 0.0 0.16483729589264243 0.0 30 0.0 0.0 0.0 0.22495442733584145 0.0 31 0.0 0.0 0.0 0.23271147655431873 0.0 32 0.0 0.0 0.0 0.246286312686654 0.0 33 0.0 0.0 0.0 0.306403444129853 0.0 34 0.0 0.0 0.0 0.35488500174533605 0.0 35 0.0 0.0 0.0 0.4169413954931544 0.0 36 0.0 0.0 0.0 0.5139045107241206 0.0 37 0.0 0.0 0.0 0.7097700034906721 0.0 38 0.0 0.0 0.0 0.9541170538727068 0.0 39 0.0 0.0 0.0 1.1461040220300198 0.0 40 0.0 0.0 0.0 1.4253577938952022 0.0 41 0.0 0.0 0.0 1.7918783694682543 0.0 42 0.0 0.0 0.0 2.1758523057828802 0.0 43 0.0 0.0 0.0 2.5656440290113642 0.0 44 0.0 0.0 0.0 2.9767676375906604 0.0 45 0.0 0.0 0.0 3.4092231315207693 0.0 46 0.0 0.0 0.0 3.7990148547492533 0.0 47 0.0 0.0 0.0 4.217895512547027 0.0 48 0.0 0.0 0.0 4.518481169763022 0.0 49 0.0 0.0 0.0 4.890819532249932 0.0 50 0.0 0.0 0.0 5.236008222472171 0.0 51 0.0 0.0 0.0 5.538533141992786 0.0 52 0.0 0.0 0.0 5.889539619128883 0.0 53 0.0 0.0 0.0 6.240546096264981 0.0 54 0.0 0.0 0.0 6.634216344102703 0.0 55 0.0 0.0 0.0 6.961951673583369 0.0 56 0.0 0.0 0.0 7.223752084706978 0.0 57 0.0 0.0 0.0 7.537912578055308 0.0 58 0.0 0.0 0.0 7.84431602218516 0.0 59 0.0 0.0 0.0 8.034363728037855 0.0 60 0.0 0.0 0.0 8.269014466896792 0.0 61 0.0 0.0 0.0 8.499786681146492 0.0 62 0.0 0.0 0.0 8.724741108482334 0.0 63 0.0 0.0 0.0 8.928363650467363 0.0 64 0.0 0.0 0.0 9.153318077803204 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGATTC 15 0.002212836 70.00001 34 TTGTGTA 15 0.002212836 70.00001 34 CAAGTGT 15 0.002212836 70.00001 33 GATCATT 15 0.002212836 70.00001 58 TTCGGTG 15 0.002212836 70.00001 44 CAGTACG 15 0.002212836 70.00001 53 AGTGTCG 15 0.002212836 70.00001 35 TTGTCAT 20 7.857113E-5 70.0 2 AGATTTC 20 7.857113E-5 70.0 40 CTCGGTG 60 1.8189894E-12 58.333336 44 TGCCTAC 30 8.267576E-6 58.333336 19 TGGTCGC 60 1.8189894E-12 58.333336 49 ACGTGTA 55 3.45608E-11 57.27273 34 GGTCGCC 75 0.0 56.0 50 TTGATGC 25 2.3696036E-4 55.999996 12 TGTCATC 25 2.3696036E-4 55.999996 3 TCGGCGG 50 9.513315E-10 55.999996 45 AATGATT 25 2.3696036E-4 55.999996 33 TCTCGGT 50 9.513315E-10 55.999996 43 GTATATC 25 2.3696036E-4 55.999996 30 >>END_MODULE