##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779831_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 51566 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.549431796144745 34.0 34.0 34.0 34.0 34.0 2 33.68349299926308 34.0 34.0 34.0 34.0 34.0 3 33.78825194895862 34.0 34.0 34.0 34.0 34.0 4 33.600880425086295 34.0 34.0 34.0 34.0 34.0 5 33.6495365163092 34.0 34.0 34.0 34.0 34.0 6 37.367335065740996 38.0 38.0 38.0 37.0 38.0 7 37.40761354380793 38.0 38.0 38.0 37.0 38.0 8 37.32112244502191 38.0 38.0 38.0 37.0 38.0 9 37.261781018500564 38.0 38.0 38.0 37.0 38.0 10-11 37.18261063491448 38.0 38.0 38.0 36.5 38.0 12-13 37.34038901601831 38.0 38.0 38.0 36.5 38.0 14-15 37.34555715006012 38.0 38.0 38.0 37.0 38.0 16-17 37.119865803048526 38.0 38.0 38.0 36.0 38.0 18-19 36.923777295116935 38.0 38.0 38.0 34.5 38.0 20-21 37.06374355195284 38.0 38.0 38.0 35.5 38.0 22-23 37.132471008028546 38.0 38.0 38.0 36.0 38.0 24-25 37.226447659310395 38.0 38.0 38.0 36.0 38.0 26-27 36.96795369041617 38.0 38.0 38.0 35.5 38.0 28-29 36.41201566923942 38.0 37.0 38.0 34.0 38.0 30-31 36.99238839545437 38.0 37.0 38.0 36.0 38.0 32-33 36.49130240856378 38.0 37.0 38.0 34.0 38.0 34-35 36.54824884613893 38.0 37.0 38.0 34.0 38.0 36-37 36.31664274909824 38.0 37.0 38.0 34.0 38.0 38-39 32.481664274909825 36.5 31.0 38.0 17.0 38.0 40-41 35.47878447038747 37.5 35.5 38.0 30.5 38.0 42-43 36.90606213396424 38.0 37.0 38.0 35.0 38.0 44-45 36.667261373773414 38.0 37.0 38.0 34.5 38.0 46-47 36.853236628786405 38.0 37.5 38.0 35.5 38.0 48-49 36.41698987705077 38.0 37.0 38.0 34.0 38.0 50-51 36.38584532443858 38.0 37.0 38.0 33.5 38.0 52-53 36.31239576465113 38.0 37.0 38.0 34.0 38.0 54-55 36.345140208664624 38.0 37.0 38.0 34.0 38.0 56-57 36.17996354186867 38.0 37.0 38.0 33.0 38.0 58-59 36.14868324089517 38.0 37.0 38.0 33.5 38.0 60-61 35.600279253771866 38.0 36.5 38.0 31.0 38.0 62-63 35.63984990109762 38.0 37.0 38.0 31.5 38.0 64-65 36.31866927820657 38.0 37.0 38.0 34.0 38.0 66-67 35.83657836558973 38.0 36.5 38.0 32.5 38.0 68-69 35.53833921576232 38.0 36.5 38.0 30.0 38.0 70-71 31.90174727533646 35.5 29.0 38.0 17.5 38.0 72-73 25.054551448628942 24.0 15.0 37.5 10.0 38.0 74-75 23.959566380948687 23.0 11.0 37.0 10.5 38.0 76 23.95064577434744 24.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 23 7.0 24 17.0 25 54.0 26 87.0 27 206.0 28 366.0 29 588.0 30 988.0 31 1417.0 32 2129.0 33 3501.0 34 6367.0 35 14598.0 36 10405.0 37 10836.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 13.541727302714554 7.955449482895784 12.845140384578071 65.65768282981159 2 6.4402901136407715 6.946437575146415 69.82507854012334 16.788193771089478 3 6.888259706007835 8.872125043633401 70.96924329984874 13.270371950510027 4 5.04014272970562 57.38858938059962 25.536206027227244 12.035061862467519 5 4.7473141217081025 21.0157855951596 68.78951246945661 5.447387813675678 6 10.148159640072917 68.52577279602839 13.888996625683589 7.437070938215102 7 9.178528487763254 19.72423690028313 12.545087848582398 58.55214676337121 8 7.491370282744445 68.78951246945661 8.144901679401157 15.574215568397781 9 7.910250940542218 14.499864251638678 7.041461428072761 70.54842337974635 10-11 8.44548733661715 40.68378388860877 35.361478493581046 15.509250281193035 12-13 8.805220494124036 10.185005623860684 41.472094015436525 39.53767986657875 14-15 9.125198774386224 8.49978668114649 14.26521351277974 68.10980103168754 16-17 38.171469572974445 35.172400418880656 7.697901718186402 18.9582282899585 18-19 40.594577822596285 15.824380405693676 8.19338323701664 35.3876585346934 20-21 11.403831982313928 8.921576232401195 8.124539425202652 71.55005236008223 22-23 9.294884226040415 38.78039793662491 7.947096924329985 43.97762091300469 24-25 38.2471008028546 38.56126129620293 7.634875693286274 15.556762207656208 26-27 40.52476437962999 42.23907225691347 8.752860411899313 8.483302951557228 28-29 11.116821161230268 41.18217430089594 10.05022689368964 37.65077764418415 30-31 8.352402745995423 14.926501958654928 64.4921072024202 12.228988092929448 32-33 38.684404452546254 8.44936586122639 17.797579800643835 35.068649885583525 34-35 37.46072993833146 9.04956754450607 9.123259512081603 44.36644300508087 36-37 43.96210681456773 34.67304037544118 9.693402629639685 11.671450180351394 38-39 11.5114610402203 15.92328278322926 36.84501415661482 35.72024201993562 40-41 8.148780204010395 9.058294224876857 41.53415040918434 41.258775161928405 42-43 37.746167495709344 8.231278664998886 38.82925599480272 15.193297844489049 44-45 10.82302292208044 37.14075165806927 42.14404840398712 9.892177015863165 46-47 37.58193383237017 10.588372183221502 16.769770779195596 35.05992320521274 48-49 36.18372571073964 7.6057867587169845 10.747391692200287 45.463095838343094 50-51 13.43367534961305 7.932967395310045 40.243807824349744 38.38954943072716 52-53 7.2380545909558265 7.903466739092478 69.18928356645392 15.66919510349778 54-55 7.214374417882645 8.045832039739212 46.03675100900341 38.70304253337473 56-57 36.77730452415372 7.794778255343508 17.552319320067138 37.87559790043563 58-59 9.884279243013589 9.545749953925096 64.71050410794138 15.85946669511994 60-61 36.0431054551098 36.220609916970595 18.24513075192054 9.491153875999068 62-63 9.291069748494166 72.78344115849814 8.394843790919408 9.530645302088283 64-65 6.239756383773142 76.09515773956727 8.287024914414284 9.378060962245304 66-67 6.557313441522538 76.03670543500402 7.644702253348982 9.761278870124453 68-69 6.763833129691045 75.80535676189368 7.754892263532515 9.67591784488276 70-71 7.345125877652353 71.00643934985841 8.21695954071143 13.431475231777803 72-73 9.39060939060939 57.693762548131474 10.903659447348769 22.011968613910362 74-75 10.987199379363847 51.37994569433669 12.667765709852599 24.96508921644686 76 10.828791434722735 52.70671295847315 11.963457920359991 24.50103768644413 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 2.5 16 7.5 17 10.0 18 12.0 19 15.0 20 28.5 21 41.0 22 41.5 23 54.5 24 68.5 25 70.0 26 92.5 27 141.5 28 176.0 29 184.0 30 201.0 31 233.5 32 308.5 33 368.0 34 363.5 35 412.5 36 511.0 37 556.0 38 599.5 39 670.5 40 794.5 41 4393.5 42 7896.0 43 9671.5 44 10379.5 45 7385.5 46 5459.0 47 4128.0 48 2188.0 49 1237.5 50 896.0 51 788.5 52 661.5 53 629.5 54 617.0 55 560.0 56 518.0 57 540.5 58 548.0 59 525.5 60 480.5 61 425.5 62 393.0 63 358.5 64 345.0 65 313.0 66 231.5 67 203.0 68 201.0 69 166.5 70 150.0 71 166.0 72 131.0 73 87.0 74 83.5 75 89.0 76 65.5 77 47.0 78 38.0 79 24.0 80 26.0 81 24.5 82 21.5 83 22.0 84 14.0 85 7.0 86 4.5 87 1.0 88 1.5 89 1.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05623860683396036 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 9.696311523096614E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.017453360741573908 52-53 0.036845983787767135 54-55 0.05817786913857968 56-57 0.061086762595508666 58-59 0.03781561494007679 60-61 0.034906721483147815 62-63 0.031997828026218825 64-65 0.018422991893883568 66-67 0.03975487724469612 68-69 0.009696311523096614 70-71 0.015514098436954582 72-73 0.02811930341698018 74-75 0.011635573827715937 76 0.017453360741573908 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 51566.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.190900981266726 #Duplication Level Percentage of deduplicated Percentage of total 1 54.82093663911846 8.876003568242641 2 14.600550964187327 4.727921498661909 3 10.659959276560068 5.177830353333592 4 7.5098814229249005 4.8636698599852615 5 5.270092226613966 4.26637707016251 6 3.0183255479698166 2.932164604584416 7 1.5570727033177627 1.7647286972035838 8 0.7545813869924541 0.9773882015281387 9 0.3832794346628339 0.558507543730365 >10 1.137860821655288 3.308381491680565 >50 0.1197748233321356 1.3128805802272816 >100 0.09581985866570847 3.310320753985184 >500 0.035932446999640676 3.397587557693053 >1k 0.023954964666427117 9.1028972578831 >5k 0.0 0.0 >10k+ 0.011977482333213559 45.4233409610984 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 23423 45.4233409610984 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 2978 5.7751231431563435 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 1716 3.327774114726758 No Hit ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT 648 1.2566419733933212 RNA PCR Primer, Index 30 (95% over 22bp) TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 595 1.1538610712484971 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT 509 0.9870845130512352 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT 493 0.9560563161773261 No Hit CTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 258 0.5003296745917852 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAGCTCGTATGCCGT 216 0.4188806577977737 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT 193 0.3742776247915293 No Hit CTTTACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 156 0.30252491952061433 No Hit CTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 152 0.2947678703021371 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCG 124 0.240468525772796 No Hit CCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 115 0.22301516503122212 No Hit CTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 91 0.1764728697203584 No Hit TTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 85 0.16483729589264243 No Hit TCTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 74 0.1435054105418299 No Hit TATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCT 73 0.14156614823721056 RNA PCR Primer, Index 30 (95% over 21bp) CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCC 73 0.14156614823721056 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCG 63 0.12217352519101733 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGCTCTCGTATGCCGT 58 0.11247721366792073 No Hit CTTATACACATCTCCGAGCCCACGAGACCTTGCCGGATCTCGTATGCCGT 55 0.10665942675406276 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTCTGCCGT 54 0.10472016444944343 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.023271147655431874 0.0 2 0.0 0.0 0.0 0.023271147655431874 0.0 3 0.0 0.0 0.0 0.023271147655431874 0.0 4 0.0 0.0 0.0 0.02908893456928984 0.0 5 0.0 0.0 0.0 0.038785246092386455 0.0 6 0.0 0.0 0.0 0.038785246092386455 0.0 7 0.0 0.0 0.0 0.038785246092386455 0.0 8 0.0 0.0 0.0 0.038785246092386455 0.0 9 0.0 0.0 0.0 0.038785246092386455 0.0 10 0.0 0.0 0.0 0.04654229531086375 0.0 11 0.0 0.0 0.0 0.04654229531086375 0.0 12 0.0 0.0 0.0 0.05817786913857968 0.0 13 0.0 0.0 0.0 0.05817786913857968 0.0 14 0.0 0.0 0.0 0.05817786913857968 0.0 15 0.0 0.0 0.0 0.05817786913857968 0.0 16 0.0 0.0 0.0 0.05817786913857968 0.0 17 0.0 0.0 0.0 0.05817786913857968 0.0 18 0.0 0.0 0.0 0.06205639374781833 0.0 19 0.0 0.0 0.0 0.06205639374781833 0.0 20 0.0 0.0 0.0 0.08144901679401156 0.0 21 0.0 0.0 0.0 0.08726680370786953 0.0 22 0.0 0.0 0.0 0.08726680370786953 0.0 23 0.0 0.0 0.0 0.08920606601248884 0.0 24 0.0 0.0 0.0 0.10859868905868207 0.0 25 0.0 0.0 0.0 0.1105379513633014 0.0 26 0.0 0.0 0.0 0.1105379513633014 0.0 27 0.0 0.0 0.0 0.13962688593259123 0.0 28 0.0 0.0 0.0 0.15901950897878447 0.0 29 0.0 0.0 0.0 0.18422991893883567 0.0 30 0.0 0.0 0.0 0.246286312686654 0.0 31 0.0 0.0 0.0 0.2559826242097506 0.0 32 0.0 0.0 0.0 0.2695574603420859 0.0 33 0.0 0.0 0.0 0.33549237869914283 0.0 34 0.0 0.0 0.0 0.39367024783772253 0.0 35 0.0 0.0 0.0 0.4615444284993988 0.0 36 0.0 0.0 0.0 0.564325330644223 0.0 37 0.0 0.0 0.0 0.7854012333708258 0.0 38 0.0 0.0 0.0 1.0278090214482412 0.0 39 0.0 0.0 0.0 1.2333708257378893 0.0 40 0.0 0.0 0.0 1.5145638599076912 0.0 41 0.0 0.0 0.0 1.8888414846992203 0.0 42 0.0 0.0 0.0 2.284450994841562 0.0 43 0.0 0.0 0.0 2.6819997672885236 0.0 44 0.0 0.0 0.0 3.110576736609394 0.0 45 0.0 0.0 0.0 3.556607066671838 0.0 46 0.0 0.0 0.0 3.938641740681845 0.0 47 0.0 0.0 0.0 4.363340185393477 0.0 48 0.0 0.0 0.0 4.671682891827949 0.0 49 0.0 0.0 0.0 5.073110188884148 0.0 50 0.0 0.0 0.0 5.433812977543343 0.0 51 0.0 0.0 0.0 5.72664158554086 0.0 52 0.0 0.0 0.0 6.0718302757631 0.0 53 0.0 0.0 0.0 6.409261916766862 0.0 54 0.0 0.0 0.0 6.789357328472249 0.0 55 0.0 0.0 0.0 7.109335608734438 0.0 56 0.0 0.0 0.0 7.373075282162666 0.0 57 0.0 0.0 0.0 7.70274987394795 0.0 58 0.0 0.0 0.0 8.0188496296009 0.0 59 0.0 0.0 0.0 8.212775860062832 0.0 60 0.0 0.0 0.0 8.451305123531009 0.0 61 0.0 0.0 0.0 8.67819881317147 0.0 62 0.0 0.0 0.0 8.90703176511655 0.0 63 0.0 0.0 0.0 9.118411356320056 0.0 64 0.0 0.0 0.0 9.358879882092852 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTTGCC 15 0.002214539 69.98643 8 ACCGGAT 15 0.002214539 69.98643 32 TTACACA 15 0.002214539 69.98643 3 CTGGTCT 15 0.002214539 69.98643 19 CACCTCT 15 0.002214539 69.98643 7 ACCCACC 15 0.002214539 69.98643 70 GAGACAC 15 0.002214539 69.98643 24 TAGGTTT 15 0.002214539 69.98643 24 AAACTAA 20 7.864666E-5 69.98642 70 CTTGCCG 25 2.805893E-6 69.98642 29 CGAGACC 25 2.805893E-6 69.98642 23 TCTTTAT 75 0.0 65.38407 1 GAAATTG 35 2.92408E-7 59.98836 26 AAATTGC 35 2.92408E-7 59.98836 27 ACGAGAA 35 2.92408E-7 59.98836 22 CGAGAAA 35 2.92408E-7 59.98836 23 GCTTGAC 30 8.229505E-6 58.378643 56 TCTTAAT 30 8.229505E-6 58.378643 1 CCTTGCC 30 8.277089E-6 58.32202 28 CCTTATA 25 2.3605088E-4 56.043495 1 >>END_MODULE