SRR1779830_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779830_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	248748
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	28994	11.655973113351665	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	3541	1.4235290333992634	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	2367	0.9515654397221284	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	806	0.3240227057101967	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	732	0.29427372280380143	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	300	0.12060398475565633	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTAACTCGTATGCCGT	295	0.11859391834306206	No Hit
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	292	0.11738787849550548	Illumina PCR Primer Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACGT	15	0.0022215825	70.010056	45
CAAACCG	15	0.0022251296	69.98191	23
CGTTGTG	15	0.0022251296	69.98191	28
CGTAGCG	15	0.0022251296	69.98191	15
CCGTTGT	15	0.0022251296	69.98191	27
ATCTCGT	4040	0.0	54.305264	37
TCTCGTA	4015	0.0	54.294807	38
TATCTCG	4025	0.0	53.986042	36
CTCGTAT	4105	0.0	53.956818	39
CCGTCTT	4100	0.0	53.79903	47
CGTATGC	4180	0.0	53.74209	41
GCCGTCT	4125	0.0	53.72761	46
CGTCTTC	4100	0.0	53.63903	48
TCGTATG	4175	0.0	53.638824	40
TATGCCG	4170	0.0	53.619232	43
TTATCTC	4040	0.0	53.612373	35
GATTATC	4055	0.0	53.500343	33
TGCCGTC	4165	0.0	53.453056	45
ATGCCGT	4170	0.0	53.367496	44
ATTATCT	4060	0.0	53.262093	34