##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779829_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 44298 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.924624136529864 23.0 12.0 33.0 12.0 34.0 2 22.8570364350535 23.0 12.0 34.0 12.0 34.0 3 23.26685177660391 23.0 11.0 34.0 11.0 34.0 4 23.75086911372974 23.0 12.0 34.0 12.0 34.0 5 23.03727030565714 23.0 11.0 34.0 11.0 34.0 6 25.236940719671317 26.0 12.0 37.0 11.0 38.0 7 25.52875976342047 27.0 12.0 37.0 11.0 38.0 8 25.540679037428326 27.0 11.0 37.0 11.0 38.0 9 25.75093683687751 27.0 12.0 37.0 11.0 38.0 10-11 24.57943925233645 26.0 11.5 36.0 11.0 38.0 12-13 24.661451984288227 26.0 11.0 37.0 11.0 38.0 14-15 23.907106415639532 25.5 11.0 35.0 11.0 38.0 16-17 24.000169307869427 24.5 11.0 36.0 11.0 38.0 18-19 23.983238520926452 24.5 11.0 37.0 11.0 38.0 20-21 23.994198383674206 24.5 11.0 35.0 11.0 38.0 22-23 24.205573615061628 24.5 11.0 36.5 10.5 38.0 24-25 24.409104248498803 26.0 11.0 37.0 10.0 38.0 26-27 23.615558264481468 23.0 11.0 36.0 10.0 38.0 28-29 23.81176351076798 23.0 11.0 36.5 11.0 38.0 30-31 23.90809968847352 24.0 11.0 37.0 11.0 38.0 32-33 24.14621427603955 26.0 11.0 37.0 11.0 38.0 34-35 24.24261817689286 26.0 11.0 37.0 11.0 38.0 36-37 24.00725766400289 25.0 11.0 36.5 11.0 38.0 38-39 23.845625084653932 24.0 11.0 36.5 11.0 38.0 40-41 23.826199828434692 24.0 11.0 36.5 11.0 38.0 42-43 24.08475551943654 25.0 11.0 37.0 11.0 38.0 44-45 24.188879859135852 25.5 11.0 37.0 11.0 38.0 46-47 24.018431983385256 25.0 11.0 37.0 11.0 38.0 48-49 23.726748385931643 24.0 11.0 36.5 11.0 38.0 50-51 23.43647568738995 23.0 11.0 36.0 11.0 38.0 52-53 23.828999051875932 24.0 11.0 36.5 11.0 38.0 54-55 23.851516998510093 24.0 11.0 36.5 11.0 38.0 56-57 23.836459885322135 23.5 11.0 37.0 11.0 38.0 58-59 23.712289493882345 23.5 11.0 37.0 11.0 38.0 60-61 23.976330759853717 24.0 11.0 37.0 11.0 38.0 62-63 23.72005508149352 23.5 11.0 37.0 11.0 38.0 64-65 23.652399656869385 23.5 11.0 37.0 11.0 38.0 66-67 23.973452526073412 24.0 11.0 37.0 11.0 38.0 68-69 23.76167095579936 24.0 11.0 36.0 11.0 38.0 70-71 24.042609147139828 24.5 11.0 36.0 11.0 38.0 72-73 23.991037970111517 24.0 11.0 36.0 11.0 38.0 74-75 23.573716646349723 23.5 11.0 36.0 11.0 38.0 76 23.25621924240372 23.0 11.0 34.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 29.0 13 385.0 14 1521.0 15 2718.0 16 3723.0 17 4442.0 18 4483.0 19 4089.0 20 2894.0 21 2049.0 22 1389.0 23 953.0 24 735.0 25 559.0 26 430.0 27 385.0 28 364.0 29 421.0 30 417.0 31 465.0 32 648.0 33 746.0 34 1063.0 35 1451.0 36 2726.0 37 5213.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.852589281683144 19.0595512212741 9.138110072689512 36.94974942435324 2 13.673303535148312 22.000993272833988 28.07801706623324 36.24768612578446 3 13.03444850783331 20.930967538037834 40.05824190708384 25.976342047045016 4 9.853718000812679 42.77619757099643 19.556187638268092 27.813896789922794 5 10.840218520023477 32.63127003476455 35.81651541830331 20.711996026908665 6 15.242223125197526 40.50069980586031 13.605580387376406 30.65149668156576 7 14.673679933178319 37.71587240670925 13.92193602275549 33.68851163735693 8 12.67777326290126 41.48042801029392 12.032145920809066 33.80965280599575 9 19.334010610678405 20.69759566542499 13.924822214696919 46.04357150919968 10-11 14.738814393426338 33.28141225337487 20.9580567971466 31.02171655605219 12-13 14.68915075172694 24.445798907399883 24.910831188766988 35.954219152106184 14-15 26.353334236308633 28.1796017878911 17.82586121269583 27.641202763104427 16-17 28.652858513460128 24.55443309441842 16.578813702804897 30.21389468931655 18-19 19.41757435521192 24.626671934082058 21.596026863818498 34.359726846887526 20-21 25.446972775294597 23.534922569867714 18.70513341460111 32.312971240236585 22-23 28.9426159194546 23.011196893764954 16.863063795205203 31.18312339157524 24-25 18.90872971081563 32.483012393615816 16.37469806081676 32.23355983475179 26-27 23.697458124520292 32.83895435459841 18.33604225924421 25.127545261637096 28-29 19.588676178435975 29.922566371681413 22.539281199205348 27.949476250677264 30-31 21.5224163619125 27.163754571312477 22.63194726624227 28.681881800532754 32-33 17.19377850015802 30.96302316131654 23.128583683236265 28.71461465528918 34-35 15.9265864505497 35.730410637289204 20.542023161839403 27.80097975032169 36-37 23.9247251134542 24.991533268609874 21.695152514054776 29.388589103881152 38-39 24.54425393098622 22.25056721337382 25.495817859601992 27.709360996037972 40-41 19.416226466206147 29.58598582328773 21.7955663912592 29.202221319246917 42-43 13.840353966319022 28.675109485755563 24.75055307237347 32.733983475551945 44-45 14.210086689543076 24.11617301787972 29.696812353259887 31.976927939317317 46-47 17.423695141773525 27.9697941123352 24.800207693696947 29.806303052194327 48-49 18.477132150435686 29.001309314190255 22.497629689827985 30.02392884554607 50-51 25.613472695667877 28.203941576178977 17.624218344357406 28.55836738379574 52-53 12.919357023524631 32.383618548787645 22.159886214837226 32.5371382128505 54-55 15.857141244595951 26.526396586560715 22.36908941088824 35.2473727579551 56-57 19.23532798266111 29.17470960750449 19.15179428132796 32.43816812850644 58-59 17.04558282347098 29.528367913665814 20.525816720475017 32.90023254238819 60-61 14.08895913298713 26.62339128471438 21.776924813727703 37.51072476857079 62-63 17.2976633931595 27.9218873462016 20.449260638898295 34.33118862174061 64-65 17.900927953760355 26.413944142150775 20.079700164819037 35.60542773926983 66-67 14.455695916731578 35.211840010837534 16.535148621036114 33.797315451394766 68-69 16.017653167185877 38.00284437220642 15.15756919048264 30.82193327012506 70-71 13.628308595293188 35.0516394830408 16.096845194424063 35.223206727241944 72-73 12.756927591850555 31.93408205880693 16.49303008070433 38.815960268638186 74-75 13.351544774181894 30.74083689848627 21.001478738895347 34.90613958843649 76 11.251326274917037 35.304873919227035 17.786757568232613 35.657042237623315 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 1.0 15 0.5 16 0.5 17 1.0 18 1.0 19 5.5 20 18.5 21 27.0 22 30.0 23 36.0 24 44.5 25 50.0 26 60.5 27 78.0 28 103.0 29 121.0 30 150.0 31 214.5 32 284.5 33 319.0 34 396.5 35 524.5 36 683.0 37 791.0 38 909.0 39 1134.5 40 1373.5 41 1645.0 42 1785.0 43 1906.5 44 2169.5 45 2434.5 46 2558.0 47 2642.0 48 2763.0 49 2852.5 50 2905.0 51 2857.0 52 2658.5 53 2436.5 54 2365.0 55 2251.5 56 2013.0 57 1757.0 58 1626.0 59 1500.0 60 1250.0 61 1038.0 62 950.0 63 877.0 64 715.0 65 539.0 66 431.5 67 411.0 68 333.5 69 254.0 70 229.0 71 206.0 72 162.5 73 104.5 74 86.5 75 83.0 76 72.0 77 64.0 78 44.5 79 22.0 80 26.0 81 26.0 82 19.0 83 16.0 84 15.0 85 11.5 86 9.5 87 10.0 88 9.0 89 9.5 90 8.0 91 4.5 92 4.0 93 3.0 94 2.5 95 3.5 96 4.0 97 3.5 98 4.5 99 4.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0022574382590636144 8 0.0 9 0.006772314777190844 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0011287191295318072 18-19 0.0011287191295318072 20-21 0.0 22-23 0.0 24-25 0.0022574382590636144 26-27 0.0 28-29 0.004514876518127229 30-31 0.0 32-33 0.0 34-35 0.0022574382590636144 36-37 0.015802067813445304 38-39 0.005643595647659036 40-41 0.0 42-43 0.0 44-45 0.004514876518127229 46-47 0.004514876518127229 48-49 0.0 50-51 0.0022574382590636144 52-53 0.009029753036254458 54-55 0.005643595647659036 56-57 0.010158472165786265 58-59 0.011287191295318072 60-61 0.018059506072508915 62-63 0.006772314777190844 64-65 0.015802067813445304 66-67 0.01693078694297711 68-69 0.0 70-71 0.0011287191295318072 72-73 0.0011287191295318072 74-75 0.007901033906722652 76 0.0022574382590636144 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 44298.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.85507246376811 #Duplication Level Percentage of deduplicated Percentage of total 1 94.21666164204603 84.65844959140367 2 2.9519646266706867 5.304979908799495 3 1.48226308913677 3.995665718542598 4 0.6883730278363983 2.474152331933722 5 0.3416742035976284 1.5350580161632579 6 0.1708371017988142 0.9210348096979548 7 0.06783237865541152 0.4266558309630231 8 0.03768465480856195 0.27089259108763375 9 0.012561551602853984 0.10158472165786266 >10 0.030147723846849564 0.3115264797507788 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0067723147771908436 0.0 3 0.0 0.0 0.0 0.0067723147771908436 0.0 4 0.0 0.0 0.0 0.0067723147771908436 0.0 5 0.0 0.0 0.0 0.00902975303625446 0.0 6 0.0 0.0 0.0 0.00902975303625446 0.0 7 0.0 0.0 0.0 0.00902975303625446 0.0 8 0.0 0.0 0.0 0.00902975303625446 0.0 9 0.0 0.0 0.0 0.00902975303625446 0.0 10 0.0 0.0 0.0 0.00902975303625446 0.0 11 0.0 0.0 0.0 0.00902975303625446 0.0 12 0.0 0.0 0.0 0.015802067813445304 0.0 13 0.0 0.0 0.0 0.015802067813445304 0.0 14 0.0 0.0 0.0 0.015802067813445304 0.0 15 0.0 0.0 0.0 0.02031694433157253 0.0 16 0.0 0.0 0.0 0.02031694433157253 0.0 17 0.0 0.0 0.0 0.022574382590636145 0.0 18 0.0 0.0 0.0 0.02483182084969976 0.0 19 0.0 0.0 0.0 0.03611901214501784 0.0 20 0.0 0.0 0.0 0.03611901214501784 0.0 21 0.0 0.0 0.0 0.04966364169939952 0.0 22 0.0 0.0 0.0 0.08126777732629012 0.0 23 0.0 0.0 0.0 0.08352521558535374 0.0 24 0.0 0.0 0.0 0.10158472165786266 0.0 25 0.0 0.0 0.0 0.10609959817598989 0.0 26 0.0 0.0 0.0 0.1083570364350535 0.0 27 0.0 0.0 0.0 0.13093141902568964 0.0 28 0.0 0.0 0.0 0.1399611720619441 0.0 29 0.0 0.0 0.0 0.16705043117070748 0.0 30 0.0 0.0 0.0 0.1828524989841528 0.0 31 0.0 0.0 0.0 0.18736737550228003 0.0 32 0.0 0.0 0.0 0.2031694433157253 0.0 33 0.0 0.0 0.0 0.22574382590636147 0.0 34 0.0 0.0 0.0 0.26412027631044294 0.0 35 0.0 0.0 0.0 0.32055623278703327 0.0 36 0.0 0.0 0.0 0.4289132692220868 0.0 37 0.0 0.0 0.0 0.5733893178021581 0.0 38 0.0 0.0 0.0 0.7584992550453745 0.0 39 0.0 0.0 0.0 0.9774707661745451 0.0 40 0.0 0.0 0.0 1.1670955799358889 0.0 41 0.0 0.0 0.0 1.4447604858007133 0.0 42 0.0 0.0 0.0 1.7179105151474108 0.0 43 0.0 0.0 0.0 2.06104113052508 0.0 44 0.0 0.0 0.0 2.4109440606799404 0.0 45 0.0 0.0 0.0 2.812768070793264 0.0 46 0.0 0.0 0.0 3.151383809652806 0.0 47 0.0 0.0 0.0 3.501286739807666 0.0 48 0.0 0.0 0.0 3.7766942074134273 0.0 49 0.0 0.0 0.0 4.047586798501061 0.0 50 0.0 0.0 0.0 4.438123617319066 0.0 51 0.0 0.0 0.0 4.742877782292655 0.0 52 0.0 0.0 0.0 5.0160278116393515 0.0 53 0.0 0.0 0.0 5.286920402726985 0.0 54 0.0 0.0 0.0 5.569100185109937 0.0 55 0.0 0.0 0.0 5.849022529233825 0.0 56 0.0 0.0 0.0 6.054449410808615 0.0 57 0.0 0.0 0.0 6.417896970517856 0.0 58 0.0 0.0 0.0 6.643640796424218 0.0 59 0.0 0.0 0.0 6.855839992776198 0.0 60 0.0 0.0 0.0 7.092871009977877 0.0 61 0.0 0.0 0.0 7.2373470585579485 0.0 62 0.0 0.0 0.0 7.440516501873674 0.0 63 0.0 0.0 0.0 7.6391710686712715 0.0 64 0.0 0.0 0.0 7.828795882432615 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCATT 25 2.7960796E-6 70.00001 58 GTATCAT 25 2.7960796E-6 70.00001 57 ATCTAGG 15 0.0022107558 70.0 42 CACATTT 15 0.0022107558 70.0 7 ATGTGCT 15 0.0022107558 70.0 34 TAAGTGT 15 0.0022107558 70.0 33 GTAGCTC 15 0.0022107558 70.0 38 GTGTCGA 15 0.0022107558 70.0 36 GATATGC 30 1.0016993E-7 70.0 26 GGCGGTC 15 0.0022107558 70.0 47 TTACGCT 15 0.0022107558 70.0 13 ATTATTT 20 7.8448094E-5 70.0 58 CATCAGA 20 7.8448094E-5 70.0 9 AAGTGTA 20 7.8448094E-5 70.0 34 TAGTCCA 15 0.0022107558 70.0 20 GTTATAC 30 1.0016993E-7 70.0 1 AGTGTAG 55 0.0 63.63636 35 ATGTATA 50 1.2732926E-11 63.000004 28 CGTATCA 40 1.0359145E-8 61.25 56 TGGTCGC 40 1.0359145E-8 61.25 49 >>END_MODULE