##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779829_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 44298 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.57307327644589 34.0 34.0 34.0 34.0 34.0 2 33.69249176035036 34.0 34.0 34.0 34.0 34.0 3 33.7933992505305 34.0 34.0 34.0 34.0 34.0 4 33.57388595421915 34.0 34.0 34.0 34.0 34.0 5 33.646056255361415 34.0 34.0 34.0 34.0 34.0 6 37.3878956160549 38.0 38.0 38.0 37.0 38.0 7 37.41205020542688 38.0 38.0 38.0 37.0 38.0 8 37.31222628561109 38.0 38.0 38.0 37.0 38.0 9 37.26147907354734 38.0 38.0 38.0 37.0 38.0 10-11 37.18593390220778 38.0 38.0 38.0 36.5 38.0 12-13 37.35230710190076 38.0 38.0 38.0 36.5 38.0 14-15 37.364226375908615 38.0 38.0 38.0 37.0 38.0 16-17 37.158460878594965 38.0 38.0 38.0 36.0 38.0 18-19 36.970190527789065 38.0 38.0 38.0 35.0 38.0 20-21 37.056729423450264 38.0 38.0 38.0 35.5 38.0 22-23 37.17507562418168 38.0 38.0 38.0 36.0 38.0 24-25 37.19404939274911 38.0 38.0 38.0 36.0 38.0 26-27 37.02598311436182 38.0 38.0 38.0 36.0 38.0 28-29 36.434714885547876 38.0 37.0 38.0 34.0 38.0 30-31 36.61783827712312 38.0 37.0 38.0 34.5 38.0 32-33 36.81487877556549 38.0 37.0 38.0 35.0 38.0 34-35 36.78844417355185 38.0 37.0 38.0 35.0 38.0 36-37 36.6224660255542 38.0 37.0 38.0 34.5 38.0 38-39 33.941103435821034 37.0 34.0 38.0 24.0 38.0 40-41 35.90203846674794 37.5 36.5 38.0 32.5 38.0 42-43 37.016784053456135 38.0 37.5 38.0 35.5 38.0 44-45 36.77914352792451 38.0 37.0 38.0 35.0 38.0 46-47 36.9443089981489 38.0 37.5 38.0 35.5 38.0 48-49 36.45127319517811 38.0 37.0 38.0 34.0 38.0 50-51 36.44809020723283 38.0 37.0 38.0 33.5 38.0 52-53 36.392354056616554 38.0 37.0 38.0 34.0 38.0 54-55 36.43858639216218 38.0 37.0 38.0 34.0 38.0 56-57 36.29860264571764 38.0 37.0 38.0 34.0 38.0 58-59 36.25741568468102 38.0 37.0 38.0 34.0 38.0 60-61 35.72222222222223 38.0 37.0 38.0 31.5 38.0 62-63 35.76670504311707 38.0 37.0 38.0 32.5 38.0 64-65 36.360298433337846 38.0 37.0 38.0 34.0 38.0 66-67 35.94354146914082 38.0 36.5 38.0 32.5 38.0 68-69 35.68994085511761 38.0 37.0 38.0 31.0 38.0 70-71 32.01743871055127 36.0 29.0 38.0 18.5 38.0 72-73 25.290272698541692 24.0 16.0 37.5 10.0 38.0 74-75 24.196205246286514 23.5 11.0 37.0 11.0 38.0 76 24.324145559618945 24.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 0.0 22 0.0 23 8.0 24 12.0 25 25.0 26 73.0 27 136.0 28 256.0 29 444.0 30 758.0 31 1129.0 32 1745.0 33 2731.0 34 4997.0 35 11816.0 36 10487.0 37 9680.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 13.515222694010298 7.9998193152046255 12.799259192338965 65.68569879844611 2 6.523996568693846 7.165109034267912 69.2762652941442 17.034629102894037 3 6.747482956341145 9.700212199196352 70.90613571718814 12.646169127274371 4 4.503589326831911 58.00036119012145 25.849925504537453 11.646123978509188 5 4.2665583096302315 22.20190527789065 68.18818005327554 5.343356359203575 6 9.26226917693801 68.90153054313964 14.230890785137026 7.605309494785317 7 8.185471127364668 20.4862522010023 13.1405481060093 58.18772856562373 8 7.727211160774752 68.25816063930652 8.645988532213645 15.36863966770509 9 7.99358887534426 14.99616235495959 7.214772675967312 69.79547609372884 10-11 8.223847577768748 40.8551176125333 35.72847532619983 15.192559483498128 12-13 8.764504040814483 10.168630637952052 41.45898234683281 39.607882974400646 14-15 8.796108176441374 8.745315815612443 14.211702559934986 68.24687344801119 16-17 37.769199512393335 35.09074901801436 8.473294505395277 18.666756964197027 18-19 39.83814167682514 16.089891191475914 8.504898641022168 35.56706849067678 20-21 10.60431622195133 9.16181317440968 8.655018285249898 71.5788523183891 22-23 9.022980721477268 39.00853311661926 8.354778996794437 43.613707165109034 24-25 37.94839379641962 38.5161523353726 8.402374878659954 15.133078989547824 26-27 40.631631224886 41.883380739536776 9.318705133414602 8.166282902162626 28-29 37.44412840308818 15.896880220325974 9.489141721973905 37.169849654611944 30-31 40.348322723373514 10.153957289268138 39.298613932908935 10.19910605444941 32-33 14.710596415188046 39.23992053817328 37.8211205923518 8.228362454286875 34-35 33.95525757370536 41.707300555329816 16.114723012325612 8.222718858639217 36-37 14.236534380784684 37.5942480473159 10.094135175402954 38.075082396496455 38-39 8.370581064607883 15.874305837735339 37.77258566978193 37.98252742787484 40-41 8.08162896744774 9.160684455280148 42.03011422637591 40.7275723508962 42-43 37.88249901235962 8.670918223376036 39.10717309103223 14.339409673232122 44-45 10.341324664770418 38.13829066775023 42.07864914894577 9.44173551853357 46-47 37.71614971330534 10.549008984604272 16.645221003205563 35.089620298884824 48-49 36.04903155898686 7.749785543365389 10.962120186012912 45.23906271163484 50-51 13.489563931502365 8.33982412769368 40.15600483140867 38.014607109395286 52-53 7.317128244498888 8.154855317083085 69.41392975285923 15.114086685558807 54-55 6.977505759067709 8.375491214598672 46.014950991463024 38.63205203487059 56-57 36.70411562129509 8.401738835883249 17.313837294642354 37.58030824817931 58-59 10.184840170274267 9.70043923534659 65.39525535494506 14.719465239434076 60-61 36.235336622596556 36.74227455939303 18.232830158855606 8.789558659154803 62-63 8.74051661849711 73.01977962427746 8.98211705202312 9.257586705202312 64-65 6.473025298307802 76.28551753722498 8.263436551031237 8.978020613435987 66-67 6.478418443960213 76.19085253638323 7.995845141186167 9.334883878470379 68-69 6.334872275338925 75.93945072187292 8.107101333122623 9.618575669665534 70-71 7.205183487791938 70.86319972005553 8.759552540383117 13.172064251769408 72-73 9.395003330360469 58.336626062610776 11.227266056288737 21.041104550740016 74-75 11.067336456510695 52.5371112490828 12.65112603713947 23.744426257267033 76 10.780484500936943 54.019822545323194 12.315715801593932 22.88397715214594 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 2.5 17 5.0 18 2.5 19 4.5 20 9.0 21 9.0 22 12.5 23 30.0 24 49.5 25 55.0 26 66.0 27 66.0 28 82.5 29 110.0 30 126.5 31 144.5 32 175.0 33 204.0 34 249.5 35 334.5 36 412.5 37 451.0 38 493.0 39 720.0 40 4210.0 41 8833.0 42 10151.0 43 9029.5 44 6335.0 45 3705.0 46 2648.0 47 2085.0 48 1275.5 49 965.5 50 902.0 51 811.5 52 634.5 53 540.0 54 532.0 55 503.5 56 446.0 57 363.5 58 310.0 59 268.0 60 214.5 61 177.0 62 151.0 63 137.5 64 122.5 65 116.0 66 102.5 67 94.0 68 82.5 69 71.0 70 70.5 71 70.0 72 55.0 73 33.0 74 23.5 75 21.0 76 22.5 77 20.5 78 18.0 79 19.0 80 13.0 81 5.5 82 5.0 83 6.0 84 8.0 85 7.0 86 3.0 87 2.0 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04966364169939952 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0022574382590636144 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0011287191295318072 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.010158472165786265 52-53 0.02596053997923157 54-55 0.04514876518127229 56-57 0.03499029301548603 58-59 0.03724773127454964 60-61 0.028217978238295187 62-63 0.022574382590636145 64-65 0.014673348683913495 66-67 0.028217978238295187 68-69 0.007901033906722652 70-71 0.007901033906722652 72-73 0.019188225202040724 74-75 0.01241591042484988 76 0.011287191295318072 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 44298.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.316763736511806 #Duplication Level Percentage of deduplicated Percentage of total 1 52.75318206972883 8.607612081809563 2 16.380741560597674 5.345613797462639 3 11.676812396236857 5.715833671949072 4 7.941339236303264 5.183078242810059 5 4.703929164360819 3.837645040408145 6 2.794687327061428 2.7360151699851007 7 1.3004980630879912 1.4853943744638585 8 0.6640841173215274 0.8668562914804281 9 0.3043718871057 0.4469727752945957 >10 1.2036524626452685 3.5216036841392384 >50 0.09684560044272275 1.0880852408686623 >100 0.12451577199778638 4.5351934624588015 >500 0.01383508577753182 1.237076165966861 >1k 0.02767017155506364 9.027495597995394 >5k 0.0 0.0 >10k+ 0.01383508577753182 46.36552440290758 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 20539 46.36552440290758 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 2639 5.957379565668879 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 1360 3.0701160323265158 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 548 1.237076165966861 RNA PCR Primer, Index 24 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 483 1.0903426791277258 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 310 0.6998058603097206 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT 285 0.6433699038331302 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 249 0.5621021265068401 No Hit CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 164 0.3702198744864328 No Hit CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 155 0.3499029301548603 RNA PCR Primer, Index 24 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAGCTCGTATGCCGT 130 0.2934669736782699 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATATCGTATGCCGT 128 0.28895209716014264 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCG 105 0.23703101720167954 No Hit CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 94 0.21219919635197976 No Hit TTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 87 0.19639712853853447 No Hit CCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 72 0.16253555465258024 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 60 0.13544629554381687 No Hit TATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCT 58 0.13093141902568964 RNA PCR Primer, Index 24 (95% over 22bp) CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCAGT 56 0.12641654250756243 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCG 55 0.1241591042484988 No Hit CAGCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGC 46 0.10384215991692627 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTCTGCCGT 45 0.10158472165786266 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0067723147771908436 0.0 3 0.0 0.0 0.0 0.0067723147771908436 0.0 4 0.0 0.0 0.0 0.013544629554381687 0.0 5 0.0 0.0 0.0 0.01805950607250892 0.0 6 0.0 0.0 0.0 0.01805950607250892 0.0 7 0.0 0.0 0.0 0.01805950607250892 0.0 8 0.0 0.0 0.0 0.01805950607250892 0.0 9 0.0 0.0 0.0 0.01805950607250892 0.0 10 0.0 0.0 0.0 0.01805950607250892 0.0 11 0.0 0.0 0.0 0.01805950607250892 0.0 12 0.0 0.0 0.0 0.02483182084969976 0.0 13 0.0 0.0 0.0 0.02483182084969976 0.0 14 0.0 0.0 0.0 0.02483182084969976 0.0 15 0.0 0.0 0.0 0.02934669736782699 0.0 16 0.0 0.0 0.0 0.02934669736782699 0.0 17 0.0 0.0 0.0 0.03386157388595422 0.0 18 0.0 0.0 0.0 0.03611901214501784 0.0 19 0.0 0.0 0.0 0.04740620344033591 0.0 20 0.0 0.0 0.0 0.04740620344033591 0.0 21 0.0 0.0 0.0 0.05643595647659037 0.0 22 0.0 0.0 0.0 0.060950832994717596 0.0 23 0.0 0.0 0.0 0.08126777732629012 0.0 24 0.0 0.0 0.0 0.08352521558535374 0.0 25 0.0 0.0 0.0 0.08804009210348097 0.0 26 0.0 0.0 0.0 0.09029753036254458 0.0 27 0.0 0.0 0.0 0.11061447469411712 0.0 28 0.0 0.0 0.0 0.11964422773037157 0.0 29 0.0 0.0 0.0 0.14673348683913495 0.0 30 0.0 0.0 0.0 0.16253555465258024 0.0 31 0.0 0.0 0.0 0.16705043117070748 0.0 32 0.0 0.0 0.0 0.18059506072508916 0.0 33 0.0 0.0 0.0 0.2031694433157253 0.0 34 0.0 0.0 0.0 0.24154589371980675 0.0 35 0.0 0.0 0.0 0.3092690414917152 0.0 36 0.0 0.0 0.0 0.44245789877646846 0.0 37 0.0 0.0 0.0 0.6298252742787485 0.0 38 0.0 0.0 0.0 0.8036480202266468 0.0 39 0.0 0.0 0.0 1.0203620930967539 0.0 40 0.0 0.0 0.0 1.2077294685990339 0.0 41 0.0 0.0 0.0 1.4853943744638585 0.0 42 0.0 0.0 0.0 1.7495146507743013 0.0 43 0.0 0.0 0.0 2.0791006365975893 0.0 44 0.0 0.0 0.0 2.438033319788704 0.0 45 0.0 0.0 0.0 2.8375998916429634 0.0 46 0.0 0.0 0.0 3.1852453835387604 0.0 47 0.0 0.0 0.0 3.553207819766129 0.0 48 0.0 0.0 0.0 3.844417355185336 0.0 49 0.0 0.0 0.0 4.119824822791097 0.0 50 0.0 0.0 0.0 4.526163709422547 0.0 51 0.0 0.0 0.0 4.844462503950517 0.0 52 0.0 0.0 0.0 5.099553027224705 0.0 53 0.0 0.0 0.0 5.365930741794212 0.0 54 0.0 0.0 0.0 5.648110524177164 0.0 55 0.0 0.0 0.0 5.921260553523861 0.0 56 0.0 0.0 0.0 6.122172558580523 0.0 57 0.0 0.0 0.0 6.481105241771638 0.0 58 0.0 0.0 0.0 6.704591629418935 0.0 59 0.0 0.0 0.0 6.912275949252788 0.0 60 0.0 0.0 0.0 7.158336719490722 0.0 61 0.0 0.0 0.0 7.314099959366112 0.0 62 0.0 0.0 0.0 7.501467334868392 0.0 63 0.0 0.0 0.0 7.7181814077384985 0.0 64 0.0 0.0 0.0 7.923608289313287 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATGC 15 0.0022107558 70.0 51 TCTTTAT 55 0.0 70.0 1 CGTCTTA 20 7.8448094E-5 70.0 48 GAAAAAC 40 1.0359145E-8 61.25 60 TGCAAAA 25 2.365914E-4 56.000004 59 GCAAAAA 25 2.365914E-4 56.000004 60 TGCTTGC 25 2.365914E-4 56.000004 55 ATCGTAT 25 2.365914E-4 56.000004 39 CTTTATA 70 0.0 55.0 2 TTTATAC 70 0.0 55.0 3 CATCTCG 2790 0.0 53.44086 36 AGCATCT 2790 0.0 53.44086 34 GCATCTC 2795 0.0 53.34526 35 ATCTCGT 2810 0.0 53.309605 37 TAGCATC 2810 0.0 53.309605 33 TCTCGTA 2810 0.0 53.309605 38 ATAGCAT 2840 0.0 53.1162 32 TCGTATG 2980 0.0 53.087246 40 GTATGCC 2995 0.0 53.055096 42 CGTATGC 2995 0.0 53.055096 41 >>END_MODULE