##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779828_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 404611 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.797968913351344 34.0 31.0 34.0 12.0 34.0 2 30.673120602257477 34.0 32.0 34.0 21.0 34.0 3 30.164864524197316 34.0 31.0 34.0 11.0 34.0 4 30.272429568153115 34.0 31.0 34.0 12.0 34.0 5 31.11096584126482 34.0 32.0 34.0 23.0 34.0 6 33.790564270373274 38.0 34.0 38.0 21.0 38.0 7 33.97746724631807 38.0 34.0 38.0 21.0 38.0 8 33.14018897162954 38.0 34.0 38.0 11.0 38.0 9 34.05172869744026 38.0 34.0 38.0 21.0 38.0 10-11 32.58975905252205 37.0 30.5 38.0 16.5 38.0 12-13 33.58220241169914 38.0 34.0 38.0 21.0 38.0 14-15 32.304402253028215 37.0 30.0 38.0 14.5 38.0 16-17 32.99657325183942 37.5 32.5 38.0 16.0 38.0 18-19 33.97613510260473 38.0 34.5 38.0 21.5 38.0 20-21 32.52631663499015 37.0 30.5 38.0 16.0 38.0 22-23 33.50160153826762 38.0 34.0 38.0 16.0 38.0 24-25 33.81329968784833 38.0 34.0 38.0 21.0 38.0 26-27 32.680399198242256 37.0 32.5 38.0 11.0 38.0 28-29 34.034629557772774 38.0 35.0 38.0 22.0 38.0 30-31 34.46736495053273 38.0 36.0 38.0 23.0 38.0 32-33 34.57435289698006 38.0 36.0 38.0 24.0 38.0 34-35 34.46004063161901 38.0 36.0 38.0 23.5 38.0 36-37 33.93141066357563 38.0 34.5 38.0 22.0 38.0 38-39 33.89059368133837 38.0 34.5 38.0 22.0 38.0 40-41 33.892145789412545 38.0 34.5 38.0 21.5 38.0 42-43 34.29465832614536 38.0 35.0 38.0 23.0 38.0 44-45 34.35499405601924 38.0 36.0 38.0 23.0 38.0 46-47 34.277293499188104 38.0 35.5 38.0 23.0 38.0 48-49 33.99729122539921 38.0 34.5 38.0 22.0 38.0 50-51 33.29491042013193 37.5 33.0 38.0 16.0 38.0 52-53 33.883214989211865 37.5 34.0 38.0 22.0 38.0 54-55 34.04966622261877 38.0 35.0 38.0 22.0 38.0 56-57 34.112462340371366 38.0 35.0 38.0 22.0 38.0 58-59 34.410654925348055 38.0 36.0 38.0 23.0 38.0 60-61 34.24625751647879 38.0 35.5 38.0 23.0 38.0 62-63 34.28251209186107 38.0 36.0 38.0 23.0 38.0 64-65 34.28240952420967 38.0 35.5 38.0 23.0 38.0 66-67 34.08483333374525 38.0 35.0 38.0 22.5 38.0 68-69 33.41003581217515 38.0 34.0 38.0 21.0 38.0 70-71 33.449919799511136 37.0 34.0 38.0 21.0 38.0 72-73 33.68922125201737 37.0 34.0 38.0 21.5 38.0 74-75 33.75101022957853 37.5 34.0 38.0 21.5 38.0 76 32.69404440314277 37.0 31.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 70.0 13 659.0 14 1950.0 15 3233.0 16 4274.0 17 5123.0 18 5483.0 19 5233.0 20 4417.0 21 3680.0 22 3207.0 23 3206.0 24 3451.0 25 3848.0 26 4570.0 27 5425.0 28 6566.0 29 7815.0 30 9747.0 31 11975.0 32 15186.0 33 20068.0 34 27650.0 35 40329.0 36 70484.0 37 136959.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.97377721756754 19.77163194186995 11.429771879093447 27.824818961469067 2 20.584215456327186 21.640044388313715 33.75167753719004 24.024062618169058 3 18.170786261372037 22.386934611268604 31.47368707227436 27.968592055085008 4 13.266569618720203 22.392124781580332 34.07668105909132 30.264624540608136 5 12.988771931558954 35.38262676990986 35.42785539691209 16.200745901619086 6 27.211387077081255 39.26381429514161 18.433560142264316 15.091238485512818 7 26.51576194689828 29.58806867334681 22.51434814203301 21.381821237721894 8 23.088007038981324 37.843175055115616 19.33940346610513 19.729414439797928 9 23.68927767217791 18.81221157434986 21.03878961951914 36.45972113395309 10-11 23.919026298781144 26.519863420831165 25.311634562982498 24.249475717405193 12-13 23.9502532688926 23.655153920014236 26.025464058555226 26.36912875253794 14-15 24.056123457766528 25.071303582726983 23.3131821417273 27.55939081777918 16-17 24.61944741713605 26.600001482913132 24.215600740467956 24.56495035948286 18-19 22.08665606358881 26.46580136653654 26.387328704064146 25.06021386581051 20-21 23.487868594773744 26.231120755491077 26.05032982296576 24.230680826769415 22-23 24.617711682810064 26.06703361072459 25.22707444087167 24.08818026559368 24-25 22.322706297871708 27.783943034674007 25.058267856657366 24.835082810796916 26-27 22.961578908994746 27.811205152635203 25.46881738767228 23.758398550697773 28-29 22.601634255094073 27.181725607284445 26.738558731351397 23.478081406270082 30-31 22.67534829922221 27.059951706462286 26.26869397368818 23.996006020627323 32-33 21.886824629088185 27.850453892751307 26.213820187785302 24.0489012903752 34-35 22.414500498031355 27.579691195843726 26.454362779385704 23.55144552673922 36-37 23.82140129089035 26.2914465536293 25.828065864577642 24.05908629090271 38-39 23.1262443813594 26.431741472704868 26.72810661235366 23.713907533582077 40-41 22.25875973475496 26.812437748234707 26.77820700086751 24.150595516142825 42-43 21.492089855093955 26.552926667111542 27.09616986359603 24.858813614198468 44-45 20.989988642837634 25.612810978013574 28.134743648207262 25.262456730941533 46-47 21.286305874560213 25.794332928407158 27.964992628531103 24.954368568501522 48-49 21.18697163561409 26.401258497390696 27.989209348767147 24.42256051822807 50-51 22.415621199988138 26.152855631679373 26.932012535713934 24.49951063261856 52-53 19.844050677967985 26.795400866879493 27.869792574300867 25.49075588085165 54-55 19.852237813574448 26.449134758224186 27.720364140603955 25.978263287597418 56-57 20.243553964765876 26.567231325593067 27.434612694073184 25.75460201556788 58-59 20.008527941367312 26.694804753400366 27.47060023111957 25.826067074112753 60-61 20.095302843016068 26.081334981458593 27.387391841779973 26.435970333745363 62-63 20.024816747844294 26.368906888995724 27.138868736953597 26.467407626206384 64-65 20.70516980315812 25.990296962393007 26.45282902258892 26.851704211859957 66-67 20.511711266299983 26.93072121624127 25.626104690686606 26.93146282677214 68-69 20.398879903511546 27.675305480860484 25.282742802910473 26.643071812717494 70-71 20.789525716121698 27.073107436790984 25.12851882059267 27.008848026494647 72-73 20.37215544663844 26.29038357444221 25.080760969774264 28.25670000914508 74-75 20.349019002008344 25.76128533910088 25.772284875637265 28.117410783253515 76 19.794166569863002 25.968180840783095 25.550236159753236 28.687416429600667 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 1.0 11 3.5 12 5.0 13 6.5 14 10.0 15 19.5 16 56.0 17 85.0 18 119.0 19 171.5 20 245.5 21 301.0 22 393.0 23 582.0 24 867.0 25 1055.0 26 1371.5 27 1843.0 28 2307.0 29 2616.0 30 3066.0 31 3931.0 32 5306.5 33 6267.0 34 6911.5 35 8542.5 36 10768.0 37 12007.0 38 13236.5 39 16190.5 40 19315.5 41 21520.0 42 22324.0 43 23349.0 44 25207.0 45 26176.5 46 26313.0 47 26312.0 48 25531.0 49 24055.5 50 23360.0 51 22192.0 52 19188.5 53 16181.5 54 15010.0 55 13962.0 56 11771.5 57 9386.0 58 8143.0 59 7295.0 60 5899.0 61 4712.0 62 4073.0 63 3832.5 64 3277.5 65 2785.0 66 2445.0 67 2283.0 68 2098.0 69 1793.0 70 1558.5 71 1444.0 72 1341.5 73 1202.0 74 1093.0 75 1021.0 76 988.0 77 886.5 78 711.5 79 605.0 80 578.5 81 499.5 82 413.0 83 379.0 84 321.5 85 225.0 86 168.5 87 151.0 88 120.5 89 80.5 90 57.5 91 35.5 92 27.0 93 20.0 94 14.0 95 14.5 96 14.0 97 13.5 98 13.5 99 14.0 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.471509672253102E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0029658116067037225 7 0.007167378049533996 8 0.0017300567705771715 9 0.01087464255791365 10-11 0.0025950851558657574 12-13 3.707264508379653E-4 14-15 7.414529016759306E-4 16-17 4.943019344506204E-4 18-19 0.0028422361230910674 20-21 0.0 22-23 0.001977207737802482 24-25 0.003460113541154343 26-27 6.178774180632756E-4 28-29 0.005684472246182135 30-31 4.943019344506204E-4 32-33 0.0 34-35 0.004448717410055584 36-37 0.02076068124692606 38-39 0.010503916107075685 40-41 9.88603868901241E-4 42-43 9.88603868901241E-4 44-45 0.00506659482811886 46-47 0.0025950851558657574 48-49 3.707264508379653E-4 50-51 0.0017300567705771715 52-53 0.013964029648230028 54-55 0.01038034062346303 56-57 0.014829058033518614 58-59 0.014458331582680648 60-61 0.027433757362009432 62-63 0.011245369008751616 64-65 0.024344370271693058 66-67 0.02125498318137668 68-69 7.414529016759306E-4 70-71 2.471509672253102E-4 72-73 0.005437321278956825 74-75 0.011986821910427546 76 0.0029658116067037225 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 404611.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.386005632545135 #Duplication Level Percentage of deduplicated Percentage of total 1 77.8244300947123 43.1038432357535 2 8.810220270196208 9.75925819018101 3 4.805354384781959 7.984481550657269 4 2.7961289482000558 6.194656546973231 5 1.6612298964111163 4.600444419978922 6 0.9066209627022906 3.012846824808753 7 0.577028845590474 2.23715260244105 8 0.4198673189795997 1.860381895514059 9 0.3053623599134841 1.5221521247521952 >10 1.8413847470625508 17.876163202736187 >50 0.05100594089041305 1.7694180835755957 >100 0.0013662305595471553 0.07920132262820094 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02249073801750323 0.0 2 0.0 0.0 0.0 0.025209398656981644 0.0 3 0.0 0.0 0.0 0.025456549624206955 0.0 4 0.0 0.0 0.0 0.05363175988789232 0.0 5 0.0 0.0 0.0 0.059563383101299765 0.0 6 0.0 0.0 0.0 0.0627763456752288 0.0 7 0.0 0.0 0.0 0.06302349664245412 0.0 8 0.0 0.0 0.0 0.06351779857690473 0.0 9 0.0 0.0 0.0 0.0652478553474819 0.0 10 0.0 0.0 0.0 0.06821366695418563 0.0 11 0.0 0.0 0.0 0.06846081792141094 0.0 12 0.0 0.0 0.0 0.06895511985586156 0.0 13 0.0 0.0 0.0 0.06969657275753749 0.0 14 0.0 0.0 0.0 0.07216808242979059 0.0 15 0.0 0.0 0.0 0.07365098823314245 0.0 16 0.0 0.0 0.0 0.07439244113481838 0.0 17 0.0 0.0 0.0 0.0746395921020437 0.0 18 0.0 0.0 0.0 0.07612249790539555 0.0 19 0.0 0.0 0.0 0.07636964887262086 0.0 20 0.0 0.0 0.0 0.07809970564319803 0.0 21 0.0 0.0 0.0 0.08057121531545114 0.0 22 0.0 0.0 0.0 0.08501993272550672 0.0 23 0.0 2.471509672253102E-4 0.0 0.0869971404633092 0.0 24 0.0 2.471509672253102E-4 0.0 0.08996295207001292 0.0 25 0.0 2.471509672253102E-4 0.0 0.09317591464394195 0.0 26 0.0 2.471509672253102E-4 0.0 0.096388877217871 0.0 27 0.0 2.471509672253102E-4 0.0 0.11640810556312112 0.0 28 0.0 4.943019344506204E-4 0.0 0.13988744744952558 0.0 29 0.0 4.943019344506204E-4 0.0 0.16287248740147944 0.0 30 0.0 4.943019344506204E-4 0.0 0.19870937764914942 0.0 31 0.0 4.943019344506204E-4 0.0 0.23528772079849533 0.0 32 0.0 4.943019344506204E-4 0.0 0.27903344199737523 0.0 33 0.0 4.943019344506204E-4 0.0 0.3220377102945792 0.0 34 0.0 4.943019344506204E-4 0.0 0.38506120693703333 0.0 35 0.0 4.943019344506204E-4 0.0 0.4903475189750155 0.0 36 0.0 4.943019344506204E-4 0.0 0.6467940812286369 0.0 37 0.0 4.943019344506204E-4 0.0 0.9641359231459352 0.0 38 0.0 4.943019344506204E-4 0.0 1.4169164951027036 0.0 39 0.0 4.943019344506204E-4 0.0 1.945325263030417 0.0 40 0.0 4.943019344506204E-4 0.0 2.5209398656981645 0.0 41 0.0 4.943019344506204E-4 0.0 3.1988749687971905 0.0 42 0.0 4.943019344506204E-4 0.0 3.98728655424593 0.0 43 0.0 4.943019344506204E-4 0.0 4.733929626233592 0.0 44 0.0 4.943019344506204E-4 0.0 5.455116148597048 0.0 45 0.0 4.943019344506204E-4 0.0 6.242539130176886 0.0 46 0.0 4.943019344506204E-4 0.0 7.019581771133262 0.0 47 0.0 4.943019344506204E-4 0.0 7.8507504739119796 0.0 48 0.0 4.943019344506204E-4 0.0 8.566252524029252 0.0 49 0.0 4.943019344506204E-4 0.0 9.298066537983397 0.0 50 0.0 4.943019344506204E-4 0.0 10.018511607445175 0.0 51 0.0 4.943019344506204E-4 0.0 10.783196700040286 0.0 52 0.0 4.943019344506204E-4 0.0 11.604726515097218 0.0 53 0.0 4.943019344506204E-4 0.0 12.349886681281527 0.0 54 0.0 4.943019344506204E-4 0.0 13.036719219200664 0.0 55 0.0 4.943019344506204E-4 0.0 13.700566717167847 0.0 56 0.0 4.943019344506204E-4 0.0 14.36293130933168 0.0 57 0.0 4.943019344506204E-4 0.0 14.979820123526054 0.0 58 0.0 4.943019344506204E-4 0.0 15.592754522244823 0.0 59 0.0 4.943019344506204E-4 0.0 16.208654732570295 0.0 60 0.0 4.943019344506204E-4 0.0 16.84086690673264 0.0 61 0.0 4.943019344506204E-4 0.0 17.439713700319565 0.0 62 0.0 4.943019344506204E-4 0.0 17.994814772707613 0.0 63 0.0 4.943019344506204E-4 0.0 18.580315414064373 0.0 64 0.0 4.943019344506204E-4 0.0 19.107735578123187 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAA 30 5.8814103E-4 46.65612 10 CGACGAA 240 0.0 43.740112 22 CGACGAT 95 3.6379788E-12 40.51716 22 CGACCAT 35 0.0012562 39.99096 22 CTTACGC 35 0.0012562 39.99096 12 TCTCGTT 45 9.1968745E-5 38.884907 43 ACGCTTC 55 6.698836E-6 38.17319 15 TCTTACG 65 4.868325E-7 37.68379 11 GCCGTAT 85 2.561137E-9 37.073357 54 CGTACTC 40 0.0024158692 35.00507 37 CTCGTTG 50 1.7095573E-4 34.996418 44 GATATCC 40 0.0024188012 34.996418 26 CTTCCGA 80 6.2464096E-8 34.992092 18 TTACGCT 40 0.0024202683 34.992092 13 TGGTCGC 135 0.0 33.700253 49 AGATCTC 250 0.0 32.1967 40 TCGCCGT 120 6.548362E-11 32.08798 52 CGCTATG 55 2.9918485E-4 31.814922 25 GTCGAGG 45 0.004309958 31.10408 20 CGACGCA 45 0.004309958 31.10408 22 >>END_MODULE