##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779826_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 347840 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.14784958601656 34.0 27.0 34.0 12.0 34.0 2 30.122642594296227 34.0 31.0 34.0 12.0 34.0 3 29.709613615455382 34.0 31.0 34.0 11.0 34.0 4 29.82651218951242 34.0 31.0 34.0 12.0 34.0 5 30.48413063477461 34.0 32.0 34.0 21.0 34.0 6 33.15489017939282 37.0 34.0 38.0 21.0 38.0 7 33.31154553817847 37.0 34.0 38.0 21.0 38.0 8 32.4303760349586 37.0 31.0 38.0 11.0 38.0 9 33.36305485280589 37.0 34.0 38.0 21.0 38.0 10-11 31.888852633394663 37.0 29.5 38.0 11.5 38.0 12-13 32.87209636614536 37.0 33.5 38.0 11.0 38.0 14-15 31.58648660303588 37.0 28.5 38.0 11.0 38.0 16-17 32.2808101425943 37.0 30.5 38.0 16.0 38.0 18-19 33.299784383624655 37.5 34.0 38.0 21.0 38.0 20-21 31.813856945722172 37.0 29.5 38.0 16.0 38.0 22-23 32.773658866145354 37.0 32.5 38.0 16.0 38.0 24-25 33.121535763569455 37.5 33.5 38.0 16.0 38.0 26-27 31.998105450781967 37.0 29.0 38.0 11.0 38.0 28-29 33.35605738270469 37.5 34.0 38.0 21.0 38.0 30-31 33.83900931462742 38.0 34.0 38.0 21.0 38.0 32-33 33.93482060717571 38.0 34.5 38.0 21.0 38.0 34-35 33.83516271849126 38.0 34.5 38.0 21.0 38.0 36-37 33.26926029208832 38.0 34.0 38.0 16.0 38.0 38-39 33.202630519779206 37.5 33.5 38.0 16.0 38.0 40-41 33.1819370975161 37.5 34.0 38.0 16.0 38.0 42-43 33.6558115800368 38.0 34.5 38.0 21.0 38.0 44-45 33.711837339006436 38.0 34.0 38.0 21.0 38.0 46-47 33.609761672033116 38.0 34.0 38.0 21.0 38.0 48-49 33.30316524839006 37.5 34.0 38.0 16.0 38.0 50-51 32.59021532888684 37.5 32.5 38.0 11.0 38.0 52-53 33.18691783578657 37.0 34.0 38.0 21.0 38.0 54-55 33.36614966651334 37.5 34.0 38.0 16.0 38.0 56-57 33.456048758049675 38.0 34.0 38.0 21.0 38.0 58-59 33.79943939742411 38.0 34.0 38.0 21.0 38.0 60-61 33.617269434222635 38.0 34.0 38.0 21.0 38.0 62-63 33.6682540823367 38.0 34.0 38.0 21.0 38.0 64-65 33.68839696412144 38.0 34.5 38.0 21.0 38.0 66-67 33.49201356945722 38.0 34.0 38.0 21.0 38.0 68-69 32.78644635464582 37.0 32.5 38.0 11.0 38.0 70-71 32.83696958371665 37.0 32.0 38.0 16.0 38.0 72-73 33.067260809567614 37.0 33.0 38.0 19.5 38.0 74-75 33.2299361775529 37.0 33.5 38.0 20.0 38.0 76 32.21794790708372 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 54.0 13 693.0 14 2194.0 15 3675.0 16 4876.0 17 6087.0 18 6189.0 19 5605.0 20 4770.0 21 3875.0 22 3356.0 23 3074.0 24 3265.0 25 3673.0 26 4194.0 27 5135.0 28 6042.0 29 7313.0 30 8943.0 31 11067.0 32 13930.0 33 18114.0 34 24485.0 35 35442.0 36 59067.0 37 102719.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.85113717057127 20.57457947256905 11.631597558626598 27.94268579823308 2 21.368732750689972 21.371032658693654 33.67697792088317 23.58325666973321 3 17.02133164673413 25.078771849126035 32.46895124195032 25.430945262189514 4 12.456014259429622 22.21222401103956 35.44158233670653 29.890179392824283 5 13.315604875804969 35.70952161913524 36.5639374425023 14.410936062557496 6 24.57241920598915 42.695404925983745 18.212109973578972 14.520065894448134 7 24.37424170111955 31.905191795709246 22.76535429448735 20.95521220868385 8 21.18510553884899 39.93370400823381 18.75751076663006 20.123679686287137 9 23.083580115580347 18.477329576492913 20.866277565337395 37.57281274258935 10-11 22.5264425910433 27.464501234802157 26.394003950216916 23.615052223937624 12-13 22.765495630174794 24.635033348666052 26.49465271389144 26.104818307267706 14-15 23.960723095233988 26.09490624946096 23.154456959849128 26.78991369545593 16-17 24.646135048693715 26.582096524957777 24.165307075861573 24.60646135048694 18-19 21.659668486049878 27.04795610480452 26.33151107514192 24.96086433400368 20-21 22.745946412143514 27.09435372585097 26.361114305427787 23.798585556577738 22-23 23.953552222843534 26.505650005821785 25.741774393635996 23.799023377698685 24-25 21.180923412189017 29.028877654138018 25.71001022052471 24.08018871314825 26-27 22.712649890609683 28.767353674278468 25.53365513157025 22.9863413035416 28-29 21.836150882640446 28.203237306652866 27.148812604220574 22.811799206486114 30-31 22.05075056383925 27.641994776311417 27.221109796644132 23.08614486320519 32-33 20.581906310237912 28.921528463558626 26.820559482174964 23.676005744028497 34-35 21.82651145540743 28.478668993493894 26.850848266523304 22.843971284575378 36-37 23.536684776748555 26.89656263073979 25.99700098194119 23.56975161057046 38-39 23.043648894006633 27.08508537000858 26.848174072301074 23.02309166368371 40-41 21.756473540919792 27.40578256032245 27.260025471554368 23.57771842720339 42-43 20.59616661731433 27.4207320053243 27.577126199189856 24.40597517817151 44-45 19.83658425441566 26.538671082686815 28.718074776216167 24.906669886681357 46-47 21.008591803790054 26.530518368807886 28.137474610551372 24.323415216850687 48-49 21.008396113724864 27.306559490799636 27.792272010510594 23.892772384964907 50-51 22.949683825886456 26.739173246739433 26.35162816371767 23.959514763656436 52-53 19.576793359344673 27.617978303435624 27.626172738695274 25.179055598524425 54-55 19.629603540947596 27.19364952496503 27.54182162145844 25.63492531262893 56-57 19.78565113320251 27.03613453230687 27.781827068912225 25.39638726557839 58-59 20.11273493632963 27.35511361185945 27.424404914219668 25.107746537591254 60-61 19.703134569985075 26.509847110277857 27.445531059588745 26.341487260148316 62-63 19.56176404205248 26.74556178991873 27.42554344622754 26.267130721801244 64-65 20.18227406957987 26.767029067811478 26.552090012738194 26.49860684987046 66-67 19.610191324550154 28.03002421029024 25.845634959429077 26.514149505730533 68-69 19.801258628273423 28.84538536506832 25.469110709264918 25.88424529739333 70-71 20.244710915107277 28.207302803883405 25.72670114621995 25.821285134789374 72-73 19.80090419682453 27.916825392261856 25.790597215533783 26.49167319537983 74-75 19.544150943396225 27.45545372866128 25.906918238993708 27.093477088948788 76 19.232726425916184 26.563052534435023 26.013932133318384 28.19028890633041 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 3.5 14 6.5 15 8.0 16 13.0 17 16.0 18 29.0 19 41.5 20 57.0 21 73.0 22 98.0 23 198.5 24 362.5 25 451.0 26 678.0 27 956.5 28 1273.5 29 1539.0 30 1845.0 31 2535.0 32 3842.0 33 4765.0 34 5635.5 35 7471.5 36 9409.0 37 10381.0 38 11938.5 39 15645.5 40 19073.0 41 21482.5 42 22614.0 43 23463.5 44 25356.5 45 26198.0 46 25996.0 47 26077.0 48 25039.0 49 22735.5 50 21551.0 51 20174.5 52 16762.5 53 13527.5 54 12328.0 55 11211.5 56 8932.0 57 6668.0 58 5567.0 59 4739.5 60 3389.5 61 2493.0 62 2119.0 63 1831.5 64 1365.5 65 1045.5 66 799.0 67 694.0 68 636.5 69 536.0 70 460.0 71 427.0 72 371.0 73 298.5 74 247.0 75 212.0 76 187.5 77 159.0 78 130.0 79 105.0 80 91.0 81 70.0 82 62.0 83 61.0 84 47.0 85 29.0 86 21.0 87 17.0 88 13.5 89 10.5 90 10.0 91 8.5 92 8.0 93 8.5 94 6.0 95 2.5 96 2.0 97 3.0 98 7.5 99 9.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 8.624655013799448E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.003162373505059798 7 0.006324747010119596 8 0.0017249310027598896 9 0.008624655013799448 10-11 0.003162373505059798 12-13 0.0 14-15 5.749770009199632E-4 16-17 7.18721251149954E-4 18-19 0.003306117755289788 20-21 0.0 22-23 0.0024436522539098434 24-25 0.0030186292548298067 26-27 8.624655013799448E-4 28-29 0.005749770009199632 30-31 4.312327506899724E-4 32-33 1.437442502299908E-4 34-35 0.003737350505979761 36-37 0.017105565777368905 38-39 0.008768399264029439 40-41 2.874885004599816E-4 42-43 2.874885004599816E-4 44-45 0.004456071757129715 46-47 0.0024436522539098434 48-49 1.437442502299908E-4 50-51 0.0027311407543698252 52-53 0.01236200551977921 54-55 0.006755979760809568 56-57 0.012218261269549219 58-59 0.009487120515179392 60-61 0.020986660533578654 62-63 0.010493330266789327 64-65 0.019261729530818766 66-67 0.015524379024839005 68-69 2.874885004599816E-4 70-71 2.874885004599816E-4 72-73 0.005031048758049678 74-75 0.007905933762649493 76 0.003162373505059798 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 347840.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.70087901556366 #Duplication Level Percentage of deduplicated Percentage of total 1 81.70829642923245 42.243907482555585 2 6.381017571244676 6.598084348942137 3 3.4355386955119784 5.328611113498565 4 2.069818827028029 4.28045811041248 5 1.294603312948318 3.346606462794445 6 0.8895293850003242 2.7593670668814307 7 0.6264206708869507 2.267054952286212 8 0.46912815800479246 1.9403470511840004 9 0.37749238723043055 1.7565019417347116 >10 2.6370576270530504 25.523651892133355 >50 0.10295370495838001 3.464930369713669 >100 0.008143230900662825 0.490479207863478 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0017249310027598896 0.0 2 0.0 0.0 0.0 0.0022999080036798527 0.0 3 0.0 0.0 0.0 0.003162373505059798 0.0 4 0.0 0.0 0.0 0.0040248390064397425 0.0 5 0.0 0.0 0.0 0.006037258509659613 0.0 6 0.0 0.0 0.0 0.006037258509659613 0.0 7 0.0 0.0 0.0 0.006037258509659613 0.0 8 0.0 0.0 0.0 0.006612235510579577 0.0 9 0.0 0.0 0.0 0.007762189512419504 0.0 10 0.0 0.0 0.0 0.008049678012879485 0.0 11 0.0 0.0 0.0 0.008049678012879485 0.0 12 0.0 0.0 0.0 0.008049678012879485 0.0 13 0.0 0.0 0.0 0.00891214351425943 0.0 14 0.0 0.0 0.0 0.010349586016559338 0.0 15 0.0 0.0 0.0 0.011499540018399264 0.0 16 0.0 0.0 0.0 0.012074517019319227 0.0 17 0.0 0.0 0.0 0.012362005519779208 0.0 18 0.0 0.0 0.0 0.012362005519779208 0.0 19 0.0 0.0 0.0 0.013799448022079117 0.0 20 0.0 0.0 0.0 0.01581186752529899 0.0 21 0.0 0.0 0.0 0.01581186752529899 0.0 22 0.0 0.0 0.0 0.027886384544618215 0.0 23 0.0 0.0 0.0 0.02903633854645814 0.0 24 0.0 0.0 0.0 0.031336246550137996 0.0 25 0.0 0.0 0.0 0.03421113155473781 0.0 26 0.0 0.0 0.0 0.0359360625574977 0.0 27 0.0 0.0 0.0 0.04542318307267709 0.0 28 0.0 0.0 0.0 0.06382244710211592 0.0 29 0.0 0.0 0.0 0.09429622815087396 0.0 30 0.0 0.0 0.0 0.1155703771849126 0.0 31 0.0 0.0 0.0 0.14546918123275068 0.0 32 0.0 0.0 0.0 0.1673183072677093 0.0 33 0.0 0.0 0.0 0.2018169273229071 0.0 34 0.0 0.0 0.0 0.24436522539098435 0.0 35 0.0 0.0 0.0 0.3096251149954002 0.0 36 0.0 0.0 0.0 0.42117065317387303 0.0 37 0.0 0.0 0.0 0.6807727690892365 0.0 38 0.0 0.0 0.0 1.063419963201472 0.0 39 0.0 0.0 0.0 1.5639374425022998 0.0 40 0.0 0.0 0.0 2.1193652253909843 0.0 41 0.0 0.0 0.0 2.6710556577736893 0.0 42 0.0 0.0 0.0 3.204921803127875 0.0 43 0.0 0.0 0.0 3.765524379024839 0.0 44 0.0 0.0 0.0 4.21256899724011 0.0 45 0.0 0.0 0.0 4.754484820607176 0.0 46 0.0 0.0 0.0 5.268226770929163 0.0 47 0.0 0.0 0.0 5.826816927322907 0.0 48 0.0 0.0 0.0 6.437442502299908 0.0 49 0.0 0.0 0.0 7.107003219871205 0.0 50 0.0 0.0 0.0 7.777713891444343 0.0 51 0.0 0.0 0.0 8.519146734130635 0.0 52 0.0 0.0 0.0 9.22291858325667 0.0 53 0.0 0.0 0.0 9.937614995400184 0.0 54 0.0 0.0 0.0 10.519204231830727 0.0 55 0.0 0.0 0.0 10.988960441582337 0.0 56 0.0 0.0 0.0 11.467053817847287 0.0 57 0.0 0.0 0.0 12.03081876724931 0.0 58 0.0 0.0 0.0 12.520986660533579 0.0 59 0.0 0.0 0.0 13.079576816927323 0.0 60 0.0 0.0 0.0 13.629254829806808 0.0 61 0.0 0.0 0.0 14.22550597976081 0.0 62 0.0 0.0 0.0 14.819457221711131 0.0 63 0.0 0.0 0.0 15.394721711131554 0.0 64 0.0 0.0 0.0 15.917950781968722 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATC 15 0.0022233422 70.002014 38 ACGAAGT 20 7.925369E-5 69.99194 24 AGATCTC 155 0.0 54.187317 40 GGTCCCC 20 0.00694719 52.50151 50 GTGTCGA 20 0.00694719 52.50151 36 AGCGAGA 20 0.00694719 52.50151 10 TGTGTCG 20 0.00694719 52.50151 35 GGTAGCC 20 0.00694719 52.50151 50 ACGTGGC 20 0.006951142 52.49396 15 CTCGGTG 110 0.0 50.903233 44 CGGTGGT 110 0.0 50.903233 46 GTAGATC 160 0.0 50.313946 38 TAGATCC 35 2.0858637E-5 49.99425 39 GATCTCG 155 0.0 49.671707 41 TCGGTGG 120 0.0 49.57763 45 TAGATCT 175 0.0 45.99471 39 ATCTCGG 155 0.0 45.156097 42 ACGCTTC 55 1.3102726E-7 44.54033 15 TCTCGGT 175 0.0 43.994938 43 CTTCCGA 40 4.591282E-5 43.744965 18 >>END_MODULE