SRR1779826_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779826_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	347840
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	26899	7.733153173873045	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	3543	1.0185717571297148	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	2164	0.6221251149954002	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	748	0.21504139834406627	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	622	0.17881784728610856	RNA PCR Primer, Index 48 (95% over 23bp)

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATC	15	0.0022258617	69.982025	33
ATTCGTC	15	0.0022258617	69.982025	29
TTCGTCG	15	0.0022258617	69.982025	30
CGTCGAT	15	0.0022258617	69.982025	32
TTAATAC	50	1.4551915E-11	62.98383	3
AAACTCG	40	1.0664735E-8	61.23428	36
GGTACAT	30	8.359197E-6	58.34352	1
AATCTCG	3595	0.0	52.55952	36
GCCTGGA	20	0.006935286	52.52428	58
GCGATCT	20	0.006939233	52.516724	64
TGGAAAC	20	0.0069550383	52.486526	33
TCGTCGA	20	0.0069550383	52.486526	31
ATCTCGT	3670	0.0	52.15282	37
CGTCAAT	3595	0.0	52.07286	32
GTCAATC	3575	0.0	52.070545	33
TCTTCTG	3840	0.0	51.984627	50
TCTCGTA	3645	0.0	51.93454	38
TATGCCG	3810	0.0	51.79772	43
CCGTCTT	3850	0.0	51.75119	47
CTCGTAT	3780	0.0	51.745975	39