##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779826_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 347840 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.521041283348666 34.0 34.0 34.0 34.0 34.0 2 33.59904553817847 34.0 34.0 34.0 34.0 34.0 3 33.73014029438822 34.0 34.0 34.0 34.0 34.0 4 33.50213028978841 34.0 34.0 34.0 34.0 34.0 5 33.57673068077277 34.0 34.0 34.0 34.0 34.0 6 37.22944457221711 38.0 38.0 38.0 36.0 38.0 7 37.310010349586015 38.0 38.0 38.0 37.0 38.0 8 37.19185257589697 38.0 38.0 38.0 36.0 38.0 9 37.096665133394666 38.0 38.0 38.0 36.0 38.0 10-11 37.02678530358786 38.0 37.5 38.0 35.5 38.0 12-13 37.212307382704694 38.0 38.0 38.0 36.0 38.0 14-15 37.23121693882244 38.0 38.0 38.0 36.0 38.0 16-17 37.15604300827967 38.0 38.0 38.0 36.0 38.0 18-19 37.02467082566697 38.0 37.5 38.0 35.5 38.0 20-21 37.02410447332107 38.0 37.5 38.0 35.5 38.0 22-23 37.01004484820608 38.0 37.5 38.0 35.5 38.0 24-25 37.2357506324747 38.0 38.0 38.0 36.0 38.0 26-27 37.13583831646734 38.0 38.0 38.0 36.0 38.0 28-29 36.628712913983435 38.0 37.0 38.0 34.0 38.0 30-31 36.98167117065317 38.0 37.0 38.0 36.0 38.0 32-33 37.01923298068077 38.0 37.5 38.0 36.0 38.0 34-35 37.08003967341306 38.0 38.0 38.0 36.0 38.0 36-37 37.036212051517936 38.0 38.0 38.0 35.5 38.0 38-39 36.685356773229074 38.0 37.0 38.0 34.5 38.0 40-41 36.86883624655013 38.0 37.0 38.0 35.0 38.0 42-43 37.15321699632015 38.0 38.0 38.0 36.0 38.0 44-45 36.92237954231831 38.0 37.5 38.0 35.5 38.0 46-47 37.06255174793009 38.0 38.0 38.0 36.0 38.0 48-49 36.68202621895124 38.0 37.0 38.0 34.5 38.0 50-51 36.88360596826127 38.0 37.0 38.0 35.5 38.0 52-53 36.81949603265869 38.0 37.0 38.0 35.0 38.0 54-55 36.82013138224471 38.0 37.0 38.0 35.0 38.0 56-57 36.690502817387305 38.0 37.0 38.0 34.5 38.0 58-59 36.817144376724926 38.0 37.0 38.0 35.0 38.0 60-61 36.47947619595216 38.0 37.0 38.0 34.0 38.0 62-63 36.29735798068077 38.0 37.0 38.0 34.0 38.0 64-65 36.66858469411223 38.0 37.0 38.0 34.0 38.0 66-67 36.46258480910764 38.0 37.0 38.0 34.0 38.0 68-69 36.594214293928246 38.0 37.0 38.0 34.0 38.0 70-71 35.98879226080957 38.0 37.0 38.0 32.5 38.0 72-73 34.91391875574977 38.0 37.0 38.0 23.5 38.0 74-75 34.76004341076357 38.0 37.0 38.0 23.5 38.0 76 34.53107463201472 38.0 36.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 0.0 22 6.0 23 19.0 24 54.0 25 142.0 26 209.0 27 502.0 28 930.0 29 1520.0 30 2641.0 31 4515.0 32 7255.0 33 11915.0 34 20019.0 35 38002.0 36 58416.0 37 201694.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.799359182699085 18.336348549388664 10.97126388844947 31.893028379462784 2 19.21774379024839 19.037488500459983 38.6709406623735 23.073827046918126 3 16.42335556577737 21.98769549218031 37.18491260349586 24.404036338546458 4 11.55502529898804 24.816294848206073 38.34751609935603 25.281163753449864 5 10.79950551977921 33.92048068077277 42.97809337626495 12.301920423183073 6 23.933130174793007 45.50885464581417 18.494422723091077 12.063592456301748 7 23.628679852805888 29.044388224471025 23.10372585096596 24.22320607175713 8 21.203426862925483 41.33739650413983 18.626667433302668 18.832509199632014 9 21.449804507819685 16.72608095676173 20.170768169273227 41.65334636614536 10-11 21.54870055197792 28.521302897884084 29.83785648574057 20.092140064397423 12-13 21.519951701931923 22.46737005519779 29.277397654093836 26.73528058877645 14-15 20.45739420423183 22.548441812327507 22.76837051517939 34.225793468261266 16-17 25.521935372585098 28.70127069917203 23.025097746090157 22.751696182152713 18-19 25.264489420423182 25.617669043238273 24.293928242870287 24.823913293468262 20-21 19.411798528058878 25.22064742410304 24.5197504599816 30.847803587856486 22-23 20.02069917203312 29.549793008279668 24.621521389144434 25.80798643054278 24-25 24.76357494519711 29.743055305997775 24.415136378337586 21.07823337046753 26-27 24.70230565777369 30.268083026678934 24.657169963201472 20.37244135234591 28-29 20.287488500459983 25.357779438822448 29.902685142594297 24.452046918123273 30-31 19.80723896044158 24.34840731370745 35.630893514259434 20.213460211591535 32-33 23.30324287028519 25.535734820607175 26.57227460901564 24.588747700091997 34-35 21.2140639374425 24.52607520699172 30.070722171113157 24.189138684452622 36-37 20.359073137074517 33.39567042318307 24.66996320147194 21.57529323827047 38-39 19.824488270469182 26.336821527138916 29.21630634774609 24.62238385464581 40-41 19.588747700091997 23.617467801287948 31.057957681692734 25.73582681692732 42-43 24.33636396305746 23.831818018471267 30.368922269738025 21.462895748733242 44-45 19.277253909843605 28.95699172033119 30.97127989880405 20.79447447102116 46-47 24.057612695492182 24.109648114075437 27.01328196872125 24.81945722171113 48-49 23.44598091076357 23.812385004599815 25.987810487580496 26.75382359705612 50-51 19.911870839742946 23.58310450421956 30.669235303420216 25.835789352617276 52-53 18.446113342219423 23.49364241971964 35.68555895374201 22.374685284318925 54-55 17.786065000848538 24.153116433726346 31.93305470621906 26.127763859206055 56-57 22.427763954608867 23.60784708538883 27.28530541213019 26.67908354787211 58-59 18.69499821693566 23.4229946277997 34.99795810373983 22.88404905152481 60-61 22.88112318481101 28.19105875180279 27.056974538824445 21.87084352456176 62-63 17.801630552000805 34.52298445655456 24.925589888852144 22.74979510259249 64-65 17.45720701940025 35.64375652353937 24.11718361373171 22.781852843328664 66-67 17.540365775976234 34.96267900203177 24.135203960583965 23.36175126140803 68-69 17.509347816398968 35.43415413941867 24.08034881263684 22.97614923154552 70-71 18.316093647792865 34.365605928822504 23.982115773054336 23.336184650330296 72-73 18.595359175756947 31.739856194547123 24.28546575742283 25.379318872273092 74-75 18.519274617656105 30.669745161577854 25.02566211122261 25.785318109543432 76 18.814027642402653 30.02021282407367 25.268042748829068 25.89771678469461 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 6.0 11 6.5 12 1.0 13 0.5 14 2.0 15 7.0 16 23.5 17 37.0 18 51.0 19 52.5 20 67.0 21 94.0 22 101.5 23 208.0 24 434.5 25 562.0 26 771.5 27 1015.0 28 1395.5 29 1742.0 30 1957.5 31 2466.0 32 3873.0 33 4987.0 34 5747.0 35 7160.0 36 8876.5 37 9940.0 38 11390.0 39 19209.0 40 28818.5 41 31498.5 42 30938.0 43 29301.5 44 27169.0 45 25620.0 46 24567.0 47 23951.5 48 22428.0 49 19928.0 50 18336.0 51 17503.5 52 13998.0 53 10773.0 54 10221.0 55 9296.5 56 7165.0 57 4845.5 58 3733.0 59 2997.5 60 1937.5 61 1394.5 62 1176.0 63 940.5 64 589.0 65 431.5 66 373.0 67 356.0 68 338.5 69 303.5 70 290.0 71 294.0 72 237.5 73 165.0 74 127.5 75 106.0 76 106.0 77 98.5 78 90.5 79 90.0 80 70.0 81 62.0 82 56.0 83 38.0 84 34.0 85 28.0 86 21.0 87 16.0 88 13.0 89 6.0 90 1.5 91 1.5 92 2.0 93 1.0 94 0.5 95 2.0 96 3.0 97 3.5 98 2.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.045710671573137074 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 7.18721251149954E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 7.18721251149954E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.015811867525298985 52-53 0.03033003679852806 54-55 0.05261039558417663 56-57 0.05606025758969641 58-59 0.03564857405703772 60-61 0.032917433302667894 62-63 0.03018629254829807 64-65 0.017536798528058877 66-67 0.03262994480220791 68-69 0.00905588776448942 70-71 0.013655703771849126 72-73 0.022567847286108556 74-75 0.014661913523459063 76 0.011787028518859247 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 347840.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.820779668813248 #Duplication Level Percentage of deduplicated Percentage of total 1 42.485144736603004 6.721481140754369 2 10.492267994403155 3.319917203311867 3 9.3038469226436 4.415823367065317 4 7.506678054187639 4.750459981600736 5 5.9130308371645075 4.6774379024839 6 4.217622794424961 4.003564857405704 7 2.921989424142756 3.235970561177553 8 2.029765041522051 2.5689972401103955 9 1.6554305754938123 2.3571182152713894 >10 12.233104977194673 39.214293928242874 >50 1.0612200396140357 11.332509199632014 >100 0.17081281459540987 3.6347171113155476 >500 0.003634315204157657 0.39385924563017477 >1k 0.003634315204157657 1.640696872125115 >5k 0.0 0.0 >10k+ 0.0018171576020788284 7.733153173873045 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 26899 7.733153173873045 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 3543 1.0185717571297148 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 2164 0.6221251149954002 No Hit TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 748 0.21504139834406627 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 622 0.17881784728610856 RNA PCR Primer, Index 48 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0025873965041398345 0.0 2 0.0 0.0 0.0 0.0037373505059797607 0.0 3 0.0 0.0 0.0 0.004887304507819688 0.0 4 0.0 0.0 0.0 0.006612235510579577 0.0 5 0.0 0.0 0.0 0.00891214351425943 0.0 6 0.0 0.0 0.0 0.00891214351425943 0.0 7 0.0 0.0 0.0 0.00891214351425943 0.0 8 0.0 0.0 0.0 0.009487120515179392 0.0 9 0.0 0.0 0.0 0.011212051517939282 0.0 10 0.0 0.0 0.0 0.011499540018399264 0.0 11 0.0 0.0 0.0 0.011499540018399264 0.0 12 0.0 0.0 0.0 0.011787028518859245 0.0 13 0.0 0.0 0.0 0.012936982520699173 0.0 14 0.0 0.0 0.0 0.014086936522539098 0.0 15 0.0 0.0 0.0 0.015524379024839007 0.0 16 0.0 0.0 0.0 0.01609935602575897 0.0 17 0.0 0.0 0.0 0.01638684452621895 0.0 18 0.0 0.0 0.0 0.01638684452621895 0.0 19 0.0 0.0 0.0 0.017536798528058877 0.0 20 0.0 0.0 0.0 0.020411683532658695 0.0 21 0.0 0.0 0.0 0.022136614535418583 0.0 22 0.0 0.0 0.0 0.022999080036798528 0.0 23 0.0 0.0 0.0 0.026161453541858327 0.0 24 0.0 0.0 0.0 0.028461361545538178 0.0 25 0.0 0.0 0.0 0.031336246550137996 0.0 26 0.0 0.0 0.0 0.03392364305427783 0.0 27 0.0 0.0 0.0 0.045710671573137074 0.0 28 0.0 0.0 0.0 0.06525988960441582 0.0 29 0.0 0.0 0.0 0.10004599816007359 0.0 30 0.0 0.0 0.0 0.12390754369825208 0.0 31 0.0 0.0 0.0 0.15725620975160995 0.0 32 0.0 0.0 0.0 0.18226770929162833 0.0 33 0.0 0.0 0.0 0.21992870285188593 0.0 34 0.0 0.0 0.0 0.2670768169273229 0.0 35 0.0 0.0 0.0 0.3406738730450782 0.0 36 0.0 0.0 0.0 0.4605565777368905 0.0 37 0.0 0.0 0.0 0.7535073597056118 0.0 38 0.0 0.0 0.0 1.155703771849126 0.0 39 0.0 0.0 0.0 1.6820952161913523 0.0 40 0.0 0.0 0.0 2.2881209751609934 0.0 41 0.0 0.0 0.0 2.873735050597976 0.0 42 0.0 0.0 0.0 3.450149494020239 0.0 43 0.0 0.0 0.0 4.045538178472861 0.0 44 0.0 0.0 0.0 4.520469181232751 0.0 45 0.0 0.0 0.0 5.094871205151794 0.0 46 0.0 0.0 0.0 5.649149034038638 0.0 47 0.0 0.0 0.0 6.24798758049678 0.0 48 0.0 0.0 0.0 6.911798528058878 0.0 49 0.0 0.0 0.0 7.640294388224471 0.0 50 0.0 0.0 0.0 8.354703311867524 0.0 51 0.0 0.0 0.0 9.136097056117755 0.0 52 0.0 0.0 0.0 9.859418123275068 0.0 53 0.0 0.0 0.0 10.584176632934682 0.0 54 0.0 0.0 0.0 11.178127874885005 0.0 55 0.0 0.0 0.0 11.660533578656853 0.0 56 0.0 0.0 0.0 12.146389144434222 0.0 57 0.0 0.0 0.0 12.722228610855566 0.0 58 0.0 0.0 0.0 13.222458601655934 0.0 59 0.0 0.0 0.0 13.809797608095677 0.0 60 0.0 0.0 0.0 14.383624655013799 0.0 61 0.0 0.0 0.0 15.00057497700092 0.0 62 0.0 0.0 0.0 15.61810027598896 0.0 63 0.0 0.0 0.0 16.222401103955843 0.0 64 0.0 0.0 0.0 16.777541398344066 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATC 15 0.0022258617 69.982025 33 ATTCGTC 15 0.0022258617 69.982025 29 TTCGTCG 15 0.0022258617 69.982025 30 CGTCGAT 15 0.0022258617 69.982025 32 TTAATAC 50 1.4551915E-11 62.98383 3 AAACTCG 40 1.0664735E-8 61.23428 36 GGTACAT 30 8.359197E-6 58.34352 1 AATCTCG 3595 0.0 52.55952 36 GCCTGGA 20 0.006935286 52.52428 58 GCGATCT 20 0.006939233 52.516724 64 TGGAAAC 20 0.0069550383 52.486526 33 TCGTCGA 20 0.0069550383 52.486526 31 ATCTCGT 3670 0.0 52.15282 37 CGTCAAT 3595 0.0 52.07286 32 GTCAATC 3575 0.0 52.070545 33 TCTTCTG 3840 0.0 51.984627 50 TCTCGTA 3645 0.0 51.93454 38 TATGCCG 3810 0.0 51.79772 43 CCGTCTT 3850 0.0 51.75119 47 CTCGTAT 3780 0.0 51.745975 39 >>END_MODULE