##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779825_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 194752 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.301958388103845 34.0 23.0 34.0 12.0 34.0 2 29.10129806112389 34.0 24.0 34.0 12.0 34.0 3 28.78567100722971 34.0 23.0 34.0 11.0 34.0 4 29.20878347847519 34.0 27.0 34.0 12.0 34.0 5 29.71593103023332 34.0 31.0 34.0 11.0 34.0 6 31.95786949556359 37.0 28.0 38.0 12.0 38.0 7 32.11690252218206 37.0 31.0 38.0 12.0 38.0 8 31.339575460072297 37.0 27.0 38.0 11.0 38.0 9 32.44734842260927 37.0 31.0 38.0 12.0 38.0 10-11 30.992500718862964 36.5 26.0 38.0 11.0 38.0 12-13 31.84449453664147 37.0 29.5 38.0 11.0 38.0 14-15 30.611480241537954 36.5 25.0 38.0 11.0 38.0 16-17 31.277280849490637 36.5 27.5 38.0 11.0 38.0 18-19 32.257876684193235 37.0 31.0 38.0 11.0 38.0 20-21 30.824322728393035 36.5 25.5 38.0 11.0 38.0 22-23 31.783848176141966 37.0 29.0 38.0 11.0 38.0 24-25 32.11321321475518 37.0 31.0 38.0 11.0 38.0 26-27 30.96208254600723 37.0 26.0 38.0 11.0 38.0 28-29 32.282697995399275 37.0 31.5 38.0 11.0 38.0 30-31 32.779042063752875 38.0 33.5 38.0 11.0 38.0 32-33 32.88449669323037 38.0 34.0 38.0 11.0 38.0 34-35 32.79454896483733 38.0 33.0 38.0 11.0 38.0 36-37 32.20362050197174 37.0 29.0 38.0 11.0 38.0 38-39 32.15471984883339 37.0 29.5 38.0 11.0 38.0 40-41 32.09126478803812 37.0 29.0 38.0 11.0 38.0 42-43 32.56278497781794 37.0 32.5 38.0 11.0 38.0 44-45 32.63862758790667 37.0 32.0 38.0 11.0 38.0 46-47 32.51052877505751 37.0 31.5 38.0 11.0 38.0 48-49 32.163754415872496 37.0 29.5 38.0 11.0 38.0 50-51 31.456839981104174 37.0 28.0 38.0 11.0 38.0 52-53 32.065277891883014 37.0 30.0 38.0 11.0 38.0 54-55 32.26206406095958 37.0 31.5 38.0 11.0 38.0 56-57 32.347020826487025 37.0 31.5 38.0 11.0 38.0 58-59 32.66114083552415 37.0 33.0 38.0 11.0 38.0 60-61 32.465697399769965 37.0 31.5 38.0 11.0 38.0 62-63 32.504266965165954 37.0 32.0 38.0 11.0 38.0 64-65 32.51081118550772 37.0 31.5 38.0 11.0 38.0 66-67 32.36077164804469 37.0 31.0 38.0 11.0 38.0 68-69 31.660439944134076 37.0 27.5 38.0 11.0 38.0 70-71 31.633551901906017 37.0 28.0 38.0 11.0 38.0 72-73 31.872406958593494 37.0 30.5 38.0 11.0 38.0 74-75 31.941381860006572 37.0 29.5 38.0 11.0 38.0 76 30.723212085113374 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 37.0 13 539.0 14 1605.0 15 2768.0 16 3849.0 17 4657.0 18 4825.0 19 4455.0 20 3735.0 21 2901.0 22 2546.0 23 2205.0 24 2357.0 25 2494.0 26 2875.0 27 3253.0 28 3976.0 29 4560.0 30 5550.0 31 6541.0 32 8222.0 33 10631.0 34 13510.0 35 19085.0 36 30634.0 37 46941.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.00909875123234 21.910429674663163 9.465884817614196 29.614586756490308 2 20.406979132435097 21.257804797896814 30.038715905356554 28.29650016431153 3 19.9499876766349 20.918912257640486 31.027152481104174 28.103947584620443 4 13.45043953335524 22.153302661846862 32.17425238251725 32.222005422280645 5 15.992133585277687 32.07155767334867 33.7803976339139 18.155911107459744 6 27.245605837317132 36.92996554504049 16.798718337124576 19.0257102805178 7 26.56646365886473 28.303669545748644 21.18487403588411 23.94499275950251 8 23.569767023893274 35.65145500947412 17.131472057758767 23.647305908873836 9 24.02869496451643 17.59800347133071 18.96958991054648 39.40371165360638 10-11 23.189042080669594 26.23481989268017 24.268402269634652 26.307735757015582 12-13 23.450336838646074 22.517868879395333 25.731186329280316 28.30060795267828 14-15 24.705263157894734 24.613350449293968 22.378177150192556 28.303209242618742 16-17 25.491973104186616 25.59364112728272 23.042954739758102 25.871431028772562 18-19 22.199058265339133 25.665607172382632 25.355204444741126 26.78013011753711 20-21 24.329660285902072 24.858538038120276 24.9437746467302 25.868027029247454 22-23 25.31599095224769 24.94216781475215 23.8361032018876 25.905738031112563 24-25 22.12594321335685 27.89446793652261 23.45947167214815 26.52011717797239 26-27 23.935363120316097 27.670674379138326 24.11482442830405 24.279138072241523 28-29 22.331769714055373 27.042654198792754 25.90806740251771 24.71750868463417 30-31 22.980113067455367 26.480480202925786 25.814501594343547 24.7249051352753 32-33 21.47577431810713 27.53886994742031 25.58895415708183 25.39640157739073 34-35 21.793281932387988 28.052027410414208 25.54334291003294 24.61134774716486 36-37 23.724835661462613 25.75518693508628 25.321744042728017 25.198233360723087 38-39 23.507466518774137 25.602610713992274 26.34618149700107 24.54374127023252 40-41 22.210611985016804 26.466805133721692 25.92329199004886 25.39929089121265 42-43 20.543819832402235 26.081375287545182 27.07674375616168 26.298061123890896 44-45 20.377364303668124 24.48066835947429 28.24455507315958 26.897412263698005 46-47 21.006485337386454 25.11591962905719 27.51903752047528 26.358557513081077 48-49 21.046767170555373 25.424385885639172 27.918840371344068 25.610006572461387 50-51 22.91434527874627 25.476130569405438 26.12184013104181 25.487684020806483 52-53 18.832500994954618 26.710487463571823 27.172403168449026 27.284608373024533 54-55 19.3463491786358 25.642790019359445 27.04493753113173 27.965923270873024 56-57 19.829967955301754 26.216568752310916 26.519298714103773 27.434164578283553 58-59 19.534583960272993 26.21206908061973 26.642410734918787 27.610936224188485 60-61 19.085868948356396 25.471022215146156 26.734699642287612 28.708409194209832 62-63 19.679766654855623 25.57963981451526 26.51476637241762 28.225827158211498 64-65 20.409986980871896 25.12383578950612 25.606082783166034 28.860094446455946 66-67 19.931389717701556 27.372472691977833 24.03439758015232 28.66174001016829 68-69 19.851194984377525 28.142787090214966 23.663489113049195 28.342528812358314 70-71 19.572478632917502 27.806603834136496 24.147819902901404 28.4730976300446 72-73 19.69616444194543 27.370618274807633 24.418530015122457 28.514687268124483 74-75 19.344096457309526 26.69727173293485 24.301244229455836 29.657387580299787 76 18.876992990834168 25.984235795527482 24.14850188708311 30.990269326555236 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.5 12 3.0 13 6.5 14 6.5 15 5.0 16 13.5 17 20.0 18 25.0 19 46.5 20 78.5 21 94.0 22 110.0 23 155.5 24 259.5 25 334.0 26 422.0 27 582.0 28 852.5 29 1051.0 30 1217.0 31 1556.5 32 2119.5 33 2509.0 34 2930.0 35 3831.5 36 4742.5 37 5173.0 38 5720.0 39 6971.0 40 8235.5 41 9378.0 42 9960.0 43 10252.0 44 11037.5 45 11733.0 46 11935.0 47 12033.5 48 11946.5 49 11418.0 50 11075.0 51 10537.0 52 9413.5 53 8359.0 54 7890.0 55 7366.0 56 6351.0 57 5383.0 58 4906.0 59 4416.5 60 3611.0 61 3078.5 62 2862.0 63 2619.5 64 2215.5 65 1935.0 66 1668.5 67 1521.0 68 1443.5 69 1277.0 70 1109.5 71 1031.0 72 988.0 73 874.5 74 797.0 75 790.0 76 708.5 77 564.5 78 475.0 79 448.0 80 417.5 81 350.0 82 276.0 83 239.0 84 208.5 85 170.0 86 129.0 87 96.0 88 84.5 89 64.5 90 51.5 91 38.0 92 29.0 93 27.5 94 19.5 95 11.0 96 9.0 97 10.5 98 8.0 99 5.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0025673677292145907 7 0.007188629641800854 8 0.0056482090042720996 9 0.007188629641800854 10-11 0.003594314820900427 12-13 0.0 14-15 0.0010269470916858365 16-17 2.567367729214591E-4 18-19 0.0025673677292145907 20-21 0.0 22-23 0.003851051593821886 24-25 0.0028241045021360498 26-27 0.0012836838646072954 28-29 0.005904945777193559 30-31 5.134735458429182E-4 32-33 0.0 34-35 0.004364525139664804 36-37 0.016431153466973384 38-39 0.008215576733486692 40-41 2.567367729214591E-4 42-43 0.0 44-45 0.0033375780479789684 46-47 0.0025673677292145907 48-49 0.0 50-51 0.0025673677292145907 52-53 0.010012734143936905 54-55 0.007702103187643772 56-57 0.012323365100230037 58-59 0.011809891554387117 60-61 0.021822625698324022 62-63 0.009755997371015445 64-65 0.01976873151495235 66-67 0.014890732829444628 68-69 2.567367729214591E-4 70-71 7.702103187643773E-4 72-73 0.004364525139664804 74-75 0.006675156095957937 76 0.003594314820900427 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 194752.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.27782025952832 #Duplication Level Percentage of deduplicated Percentage of total 1 76.06611299971097 48.132978262366805 2 11.123966471116505 14.078007018646597 3 5.741327275140382 10.898960261023817 4 3.046160531997641 7.710175945016634 5 1.5198274603548136 4.808568443091365 6 0.7992620966513299 3.034533797529396 7 0.45777788656246765 2.02770307772806 8 0.30151808961478255 1.526352598371245 9 0.2066055596728323 1.1766194522637063 >10 0.7364531028426174 6.564816961382795 >50 9.88526335621138E-4 0.0412841825795814 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0015404206375287544 0.0 3 0.0 0.0 0.0 0.0015404206375287544 0.0 4 0.0 0.0 0.0 0.0020538941833716726 0.0 5 0.0 0.0 0.0 0.004621261912586263 0.0 6 0.0 0.0 0.0 0.004621261912586263 0.0 7 0.0 0.0 0.0 0.004621261912586263 0.0 8 0.0 0.0 0.0 0.004621261912586263 0.0 9 0.0 0.0 0.0 0.00821557673348669 0.0 10 0.0 0.0 0.0 0.009242523825172527 0.0 11 0.0 0.0 0.0 0.011296418008544199 0.0 12 0.0 0.0 0.0 0.01386378573775879 0.0 13 0.0 0.0 0.0 0.015404206375287546 0.0 14 0.0 0.0 0.0 0.01643115346697338 0.0 15 0.0 0.0 0.0 0.0169446270128163 0.0 16 0.0 0.0 0.0 0.01951199474203089 0.0 17 0.0 0.0 0.0 0.01951199474203089 0.0 18 0.0 0.0 0.0 0.02002546828787381 0.0 19 0.0 0.0 0.0 0.022079362471245482 0.0 20 0.0 0.0 0.0 0.023106309562931318 0.0 21 0.0 0.0 0.0 0.02516020374630299 0.0 22 0.0 0.0 0.0 0.03440272757147552 0.0 23 0.0 0.0 0.0 0.035429674663161353 0.0 24 0.0 0.0 0.0 0.04826651330923431 0.0 25 0.0 0.0 0.0 0.051347354584291814 0.0 26 0.0 0.0 0.0 0.05699556358856392 0.0 27 0.0 0.0 0.0 0.09755997371015446 0.0 28 0.0 0.0 0.0 0.1386378573775879 0.0 29 0.0 0.0 0.0 0.18331005586592178 0.0 30 0.0 0.0 0.0 0.22387446598751232 0.0 31 0.0 0.0 0.0 0.26187150837988826 0.0 32 0.0 0.0 0.0 0.30140897140979295 0.0 33 0.0 0.0 0.0 0.3337578047978968 0.0 34 0.0 0.0 0.0 0.3840782122905028 0.0 35 0.0 0.0 0.0 0.5247699638514624 0.0 36 0.0 0.0 0.0 0.7250246467302005 0.0 37 0.0 0.0 0.0 1.0844561288202432 0.0 38 0.0 0.0 0.0 1.5835524153795597 0.0 39 0.0 0.0 0.0 2.1447790009858694 0.0 40 0.0 0.0 0.0 2.8076733486690766 0.0 41 0.0 0.0 0.0 3.664660696680907 0.0 42 0.0 0.0 0.0 4.59764212947749 0.0 43 0.0 0.0 0.0 5.447954321393362 0.0 44 0.0 0.0 0.0 6.353721656260269 0.0 45 0.0 0.0 0.0 7.136768813670719 0.0 46 0.0 0.0 0.0 7.968082484390404 0.0 47 0.0 0.0 0.0 8.867688136707196 0.0 48 0.0 0.0 0.0 9.667679921130464 0.0 49 0.0 0.0 0.0 10.361382681564246 0.0 50 0.0 0.0 0.0 11.017088399605653 0.0 51 0.0 0.0 0.0 11.854563752875451 0.0 52 0.0 0.0 0.0 12.691012159053566 0.0 53 0.0 0.0 0.0 13.602941176470589 0.0 54 0.0 0.0 0.0 14.535922609267171 0.0 55 0.0 0.0 0.0 15.340535655603023 0.0 56 0.0 0.0 0.0 16.080451035162667 0.0 57 0.0 0.0 0.0 16.765938218862964 0.0 58 0.0 0.0 0.0 17.458614032205062 0.0 59 0.0 0.0 0.0 18.087619125862634 0.0 60 0.0 0.0 0.0 18.733568846533025 0.0 61 0.0 0.0 0.0 19.402111403220506 0.0 62 0.0 0.0 0.0 20.075275221820572 0.0 63 0.0 0.0 0.0 20.730467466316135 0.0 64 0.0 0.0 0.0 21.390794446270128 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTGCCG 15 0.0022228023 69.994606 17 ACGACTC 30 8.357911E-6 58.32884 24 CGGTGGT 90 0.0 54.45423 46 GACGACT 45 2.6897396E-8 54.44025 23 TCGGTGG 110 0.0 54.086742 45 GGTCGCA 20 0.0069384766 52.509438 50 CGTATCT 20 0.006945528 52.495956 67 TCCGACT 20 0.006945528 52.495956 20 GTCTCGT 20 0.006945528 52.495956 43 GTCCGAC 20 0.006945528 52.495956 19 GTAGATC 150 0.0 51.32938 38 GGTGGTC 105 0.0 50.00899 47 TGGTCGC 75 1.4551915E-11 46.675056 49 AGCAATT 45 1.6794274E-6 46.663074 5 TCTCGGT 135 0.0 46.66307 43 AGCGATC 30 5.869546E-4 46.66307 27 CTCGGTG 140 0.0 44.996532 44 AGATCTC 175 0.0 43.996613 40 TAGATCT 175 0.0 43.996613 39 ATCTCGG 145 0.0 43.444927 42 >>END_MODULE