SRR1779825_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779825_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	194752
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	20389	10.469212126191259	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	2651	1.3612183700295761	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	1573	0.8076938876109102	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	568	0.2916529740387775	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	449	0.23054962208347027	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT	373	0.19152563259940847	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCGT	335	0.17201363785737758	No Hit
CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	215	0.1103968123562274	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGATA	15	0.002223934	69.98563	29
ATCCGTG	15	0.002223934	69.98563	21
TAACCGG	15	0.002223934	69.98563	22
CGAGGAT	15	0.002223934	69.98563	19
TCTAATG	30	8.351542E-6	58.33633	69
CGTCTGC	25	2.3885147E-4	55.9885	41
AGACGAT	25	2.3885147E-4	55.9885	25
TACCTCG	70	0.0	54.988705	36
ATCTCGT	2895	0.0	53.184235	37
CTCGTAT	3030	0.0	53.00891	39
CGTATGC	3085	0.0	52.97129	41
TCGTATG	3105	0.0	52.968185	40
TCTCGTA	2895	0.0	52.942486	38
CCGTCTT	3080	0.0	52.743526	47
GCCGTCT	3090	0.0	52.686142	46
TATGCCG	3090	0.0	52.659084	43
GCTCGAA	20	0.0069349515	52.516182	61
TATAAGG	20	0.006942001	52.502697	68
CGTATGA	20	0.0069490564	52.489216	41
CCGATAT	20	0.0069490564	52.489216	30