FastQCFastQC Report
Wed 25 May 2016
SRR1779824_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779824_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44271
Sequences flagged as poor quality0
Sequence length76
%GC49

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCAGAT150.002206352370.0350712
GCAGTGT150.002206352370.0350731
GGTGGCC207.825276E-570.0350747
CAGTGTG150.002206352370.0350732
CTTAAAG301.00606485E-769.9559342
AGATTTC150.00221628469.9559340
CTATTTC150.00221628469.9559324
AGAGGAT150.00221628469.9559328
TAGTCCA150.00221628469.9559320
ACGACCG150.00221628469.9559324
CATATGT308.279103E-658.29660825
ACATCCG308.279103E-658.2966088
GTCCATA252.3732873E-455.96474522
GACGAAG509.513315E-1055.96474523
CTGTCGC200.00689444652.52630212
CGTAGAT200.00689444652.52630237
GGCGGTC200.00689444652.52630247
GATGCAC200.00689444652.52630233
CATGTGT200.00689444652.52630233
AAGTGTA200.00689444652.52630234
Produced by FastQC (version 0.11.5)