##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779824_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 44271 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.879108219827877 23.0 12.0 33.0 12.0 34.0 2 23.723814686815295 23.0 12.0 34.0 12.0 34.0 3 23.252422579114995 23.0 11.0 34.0 11.0 34.0 4 24.213164373969416 23.0 12.0 34.0 12.0 34.0 5 23.26197736667344 23.0 11.0 34.0 11.0 34.0 6 25.907411172099117 27.0 12.0 37.0 11.0 38.0 7 25.59691445867498 27.0 12.0 37.0 11.0 38.0 8 25.000338822253845 26.0 11.0 37.0 11.0 38.0 9 26.06089765309119 28.0 12.0 37.0 11.0 38.0 10-11 25.001016466761534 26.0 11.5 36.5 11.0 38.0 12-13 25.24467484357706 27.0 11.0 37.0 11.0 38.0 14-15 24.408359874409886 26.0 11.0 36.0 11.0 38.0 16-17 24.570576675476048 26.0 11.0 36.5 11.0 38.0 18-19 24.711176616746855 26.0 11.0 37.0 11.0 38.0 20-21 24.44311174357932 24.5 11.0 36.0 11.0 38.0 22-23 24.7698945133383 25.5 11.0 37.0 11.0 38.0 24-25 24.976158207404396 26.0 11.0 37.0 11.0 38.0 26-27 24.14817826568182 24.0 11.0 36.0 10.5 38.0 28-29 24.412165977728083 26.0 11.0 37.0 11.0 38.0 30-31 24.573377606107837 26.0 11.0 37.0 11.0 38.0 32-33 24.86607485712995 26.0 11.0 37.0 11.0 38.0 34-35 24.92697251022114 26.0 11.0 37.0 11.0 38.0 36-37 24.54816923042172 26.0 11.0 37.0 11.0 38.0 38-39 24.473741275326965 26.0 11.0 37.0 11.0 38.0 40-41 24.447798784757516 26.0 11.0 37.0 11.0 38.0 42-43 24.665187142824877 26.0 11.0 37.0 11.0 38.0 44-45 24.852634907727406 26.0 11.0 37.0 11.0 38.0 46-47 24.70479546429943 26.0 11.0 37.0 11.0 38.0 48-49 24.334214271193332 25.5 11.0 37.0 11.0 38.0 50-51 23.917767838991665 24.0 11.0 36.5 11.0 38.0 52-53 24.411047864290396 25.5 11.0 36.5 11.0 38.0 54-55 24.38072327257121 25.0 11.0 37.0 11.0 38.0 56-57 24.406552822389372 25.0 11.0 37.0 11.0 38.0 58-59 24.39519098281042 25.0 11.0 37.0 11.0 38.0 60-61 24.548880757154798 25.0 11.0 37.0 11.0 38.0 62-63 24.304420501005175 25.0 11.0 37.0 11.0 38.0 64-65 24.321497142598993 24.5 11.0 37.0 11.0 38.0 66-67 24.59573987486165 25.0 11.0 37.0 11.0 38.0 68-69 24.31596304578618 25.0 11.0 36.5 11.0 38.0 70-71 24.3906168823835 25.0 11.0 36.5 11.0 38.0 72-73 24.25241128503987 25.0 11.0 36.0 11.0 38.0 74-75 24.33678932032256 25.0 11.0 36.5 11.0 38.0 76 23.81771362743105 24.0 11.0 35.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 20.0 13 327.0 14 1274.0 15 2461.0 16 3540.0 17 3950.0 18 4191.0 19 3651.0 20 2875.0 21 2080.0 22 1405.0 23 1027.0 24 803.0 25 630.0 26 567.0 27 566.0 28 484.0 29 570.0 30 599.0 31 733.0 32 789.0 33 1022.0 34 1320.0 35 1866.0 36 2886.0 37 4634.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.526213548372525 19.990512976892322 9.073659957986042 46.40961351674912 2 13.76747758126087 22.552009215965306 36.31271035214926 27.36780285062456 3 11.861037699622779 30.08515732646654 33.23846310225655 24.81534187165413 4 9.563822818549388 32.66698290077026 20.412911386686545 37.35628289399381 5 9.087212848139865 29.174854871134603 28.45655169298186 33.28138058774367 6 16.496871399850914 47.34238406108112 12.43985633287402 23.72088820619395 7 16.57970228817962 27.867000971290462 20.984391588172844 34.56890515235707 8 14.267320246673746 41.234272289864236 19.58255212451151 24.915855338950507 9 17.821804545249176 21.379840057832197 16.145574481543395 44.65278091537523 10-11 15.89469047538373 32.23551203424479 22.94469104010662 28.925106450264852 12-13 15.50224752095051 23.288382914323147 26.36263016421585 34.846739400510494 14-15 25.705314991755323 27.74728377493167 19.081339929073206 27.466061304239798 16-17 28.074811953649114 24.05073298547582 17.544216304126856 30.330238756748212 18-19 19.616214323631397 23.646076870079852 22.364155908695604 34.37355289759315 20-21 25.67595039642204 23.03765444647738 19.403221070226557 31.88317408687403 22-23 27.935894829572405 22.615256036683157 17.920309005895508 31.52854012784893 24-25 18.85814321210752 31.895188615315114 16.94375423537384 32.30291393720353 26-27 23.99426260983488 31.9836913555149 18.539224322920195 25.482821711730026 28-29 19.884111009454102 29.396948030677827 22.844589023302046 27.87435193656603 30-31 21.34693139978767 26.951051478394433 23.280477061733414 28.421540060084478 32-33 17.093582706512166 30.46012062072237 23.095254229631134 29.351042443134332 34-35 16.944692289447826 33.63865327927175 21.31216046803176 28.104493963248668 36-37 23.798926856820106 25.035865574696416 22.406099971759392 28.759107596724085 38-39 24.46909452376649 22.33982468823423 25.658548707753482 27.532532080245797 40-41 19.866726903094648 29.192455387395526 22.457646261576688 28.483171447933138 42-43 14.540484984018342 27.811472910242944 25.13581585515987 32.51222625057884 44-45 14.563238383518943 23.496125957216112 29.84820077254964 32.09243488671531 46-47 17.82317995979309 26.902486955343225 25.221928576268887 30.052404508594794 48-49 18.856587834022275 28.302952271238507 23.883580673578642 28.95687922116058 50-51 26.39936751750621 26.95278969957082 18.43121752880054 28.21662525412243 52-53 13.401561105651382 31.30118494922453 23.12853705649124 32.16871688863285 54-55 16.24857404249071 25.78357071055039 22.86614635689034 35.101708890068565 56-57 18.889855301652567 28.291294378113385 20.506274780015588 32.31257554021846 58-59 17.167803731983916 29.269642615099624 21.10536303257579 32.45719062034067 60-61 14.44097975415763 26.34445046999277 22.558523138105567 36.65604663774403 62-63 17.233862314338964 27.680578302366293 21.511266730671487 33.57429265262326 64-65 17.74792991651887 26.193192729573106 20.764095206895384 35.29478214701264 66-67 14.792765721902782 35.014628966483286 17.088214362369104 33.10439094924483 68-69 16.1744276662789 37.46287030867056 15.417716086332886 30.944985938717657 70-71 14.005782566465633 35.578595468817056 17.57583971448578 32.83978225023153 72-73 13.887163268763766 34.811091658666065 19.513186875247076 31.78855819732309 74-75 13.545749234783196 32.64284988197025 18.919773653952586 34.89162722929397 76 11.829414289263852 30.55724966682478 17.474193038332093 40.13914300557928 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.5 16 0.5 17 0.0 18 7.0 19 8.5 20 9.0 21 15.0 22 17.5 23 33.0 24 45.5 25 45.0 26 63.0 27 91.0 28 125.0 29 149.0 30 166.0 31 233.5 32 333.5 33 383.0 34 442.5 35 581.5 36 743.5 37 826.0 38 950.5 39 1218.5 40 1442.5 41 1772.0 42 2021.0 43 2123.0 44 2329.5 45 2495.0 46 2556.0 47 2735.5 48 2875.5 49 2773.0 50 2710.0 51 2665.5 52 2486.0 53 2286.0 54 2221.0 55 2025.5 56 1785.5 57 1627.0 58 1513.0 59 1366.5 60 1158.5 61 1022.0 62 947.0 63 827.0 64 661.0 65 549.0 66 433.5 67 384.0 68 364.0 69 304.5 70 233.5 71 202.0 72 182.0 73 136.5 74 112.0 75 113.0 76 95.5 77 77.5 78 57.0 79 37.0 80 30.5 81 26.0 82 29.5 83 31.0 84 24.0 85 18.0 86 15.5 87 12.0 88 10.0 89 8.5 90 8.5 91 6.0 92 4.0 93 3.5 94 3.5 95 4.0 96 4.0 97 3.5 98 4.0 99 3.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.004517630051275101 7 0.0 8 0.004517630051275101 9 0.011294075128187753 10-11 0.0033882225384563257 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0033882225384563257 20-21 0.0 22-23 0.0 24-25 0.0022588150256375506 26-27 0.0 28-29 0.010164667615368977 30-31 0.0 32-33 0.0 34-35 0.0011294075128187753 36-37 0.01919992771791918 38-39 0.015811705179462853 40-41 0.0022588150256375506 42-43 0.0033882225384563257 44-45 0.004517630051275101 46-47 0.0 48-49 0.0 50-51 0.0022588150256375506 52-53 0.01694111269228163 54-55 0.005647037564093876 56-57 0.014682297666644079 58-59 0.011294075128187753 60-61 0.03388222538456326 62-63 0.007905852589731427 64-65 0.02145874274355673 66-67 0.02145874274355673 68-69 0.0011294075128187753 70-71 0.0 72-73 0.007905852589731427 74-75 0.005647037564093876 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 44271.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.34808339545076 #Duplication Level Percentage of deduplicated Percentage of total 1 94.047202360118 84.96984481940774 2 3.255162758137907 5.881954326760182 3 1.5300765038251913 4.147184387070543 4 0.7000350017500875 2.5298728287140566 5 0.280014000700035 1.2649364143570283 6 0.10750537526876343 0.5827742766144881 7 0.04750237511875594 0.30042239840979423 8 0.005000250012500625 0.03614104041020081 9 0.015000750037501875 0.12197601138442773 >10 0.012500625031251563 0.16489349687154117 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.015811705179462853 0.0 2 0.0 0.0 0.0 0.015811705179462853 0.0 3 0.0 0.0 0.0 0.015811705179462853 0.0 4 0.0 0.0 0.0 0.09261141605113957 0.0 5 0.0 0.0 0.0 0.11068193625623998 0.0 6 0.0 0.0 0.0 0.12197601138442773 0.0 7 0.0 0.0 0.0 0.12423482641006528 0.0 8 0.0 0.0 0.0 0.12649364143570282 0.0 9 0.0 0.0 0.0 0.1332700865126155 0.0 10 0.0 0.0 0.0 0.14456416164080324 0.0 11 0.0 0.0 0.0 0.14456416164080324 0.0 12 0.0 0.0 0.0 0.14456416164080324 0.0 13 0.0 0.0 0.0 0.14456416164080324 0.0 14 0.0 0.0 0.0 0.15134060671771588 0.0 15 0.0 0.0 0.0 0.15134060671771588 0.0 16 0.0 0.0 0.0 0.15134060671771588 0.0 17 0.0 0.0 0.0 0.15134060671771588 0.0 18 0.0 0.0 0.0 0.15134060671771588 0.0 19 0.0 0.0 0.0 0.15134060671771588 0.0 20 0.0 0.0 0.0 0.15134060671771588 0.0 21 0.0 0.0 0.0 0.16263468184590363 0.0 22 0.0 0.0 0.0 0.18974046215355425 0.0 23 0.0 0.0 0.0 0.1919992771791918 0.0 24 0.0 0.0 0.0 0.2191050574868424 0.0 25 0.0 0.0 0.0 0.2236226875381175 0.0 26 0.0 0.0 0.0 0.2236226875381175 0.0 27 0.0 0.0 0.0 0.23943439271758035 0.0 28 0.0 0.0 0.0 0.25750491292268074 0.0 29 0.0 0.0 0.0 0.2823518782046938 0.0 30 0.0 0.0 0.0 0.3139752885636195 0.0 31 0.0 0.0 0.0 0.34108106887127015 0.0 32 0.0 0.0 0.0 0.36818684917892075 0.0 33 0.0 0.0 0.0 0.4065867046147591 0.0 34 0.0 0.0 0.0 0.47209234035824804 0.0 35 0.0 0.0 0.0 0.578256646563213 0.0 36 0.0 0.0 0.0 0.7024914729732782 0.0 37 0.0 0.0 0.0 0.9532199408190464 0.0 38 0.0 0.0 0.0 1.3530302003568928 0.0 39 0.0 0.0 0.0 1.6421585236384992 0.0 40 0.0 0.0 0.0 2.132321384201848 0.0 41 0.0 0.0 0.0 2.5343904587653316 0.0 42 0.0 0.0 0.0 2.945494793431366 0.0 43 0.0 0.0 0.0 3.3904813534819636 0.0 44 0.0 0.0 0.0 3.7722210928147093 0.0 45 0.0 0.0 0.0 4.160737277224368 0.0 46 0.0 0.0 0.0 4.544735831582751 0.0 47 0.0 0.0 0.0 4.903887420659122 0.0 48 0.0 0.0 0.0 5.2811095299405935 0.0 49 0.0 0.0 0.0 5.5883083734273 0.0 50 0.0 0.0 0.0 5.9768245578369585 0.0 51 0.0 0.0 0.0 6.311129181631316 0.0 52 0.0 0.0 0.0 6.744821666553726 0.0 53 0.0 0.0 0.0 7.131079035937747 0.0 54 0.0 0.0 0.0 7.564771520860157 0.0 55 0.0 0.0 0.0 7.899076144654514 0.0 56 0.0 0.0 0.0 8.204016173115583 0.0 57 0.0 0.0 0.0 8.432156490704976 0.0 58 0.0 0.0 0.0 8.633191027986719 0.0 59 0.0 0.0 0.0 8.856813715524837 0.0 60 0.0 0.0 0.0 9.173047819114093 0.0 61 0.0 0.0 0.0 9.41474102685731 0.0 62 0.0 0.0 0.0 9.72871631542093 0.0 63 0.0 0.0 0.0 9.947821372907773 0.0 64 0.0 0.0 0.0 10.169185245420252 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCAGAT 15 0.0022063523 70.03507 12 GCAGTGT 15 0.0022063523 70.03507 31 GGTGGCC 20 7.825276E-5 70.03507 47 CAGTGTG 15 0.0022063523 70.03507 32 CTTAAAG 30 1.00606485E-7 69.95593 42 AGATTTC 15 0.002216284 69.95593 40 CTATTTC 15 0.002216284 69.95593 24 AGAGGAT 15 0.002216284 69.95593 28 TAGTCCA 15 0.002216284 69.95593 20 ACGACCG 15 0.002216284 69.95593 24 CATATGT 30 8.279103E-6 58.296608 25 ACATCCG 30 8.279103E-6 58.296608 8 GTCCATA 25 2.3732873E-4 55.964745 22 GACGAAG 50 9.513315E-10 55.964745 23 CTGTCGC 20 0.006894446 52.526302 12 CGTAGAT 20 0.006894446 52.526302 37 GGCGGTC 20 0.006894446 52.526302 47 GATGCAC 20 0.006894446 52.526302 33 CATGTGT 20 0.006894446 52.526302 33 AAGTGTA 20 0.006894446 52.526302 34 >>END_MODULE