##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779824_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 44271 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.473199159720814 34.0 34.0 34.0 34.0 34.0 2 33.59723069277857 34.0 34.0 34.0 34.0 34.0 3 33.71981658421992 34.0 34.0 34.0 34.0 34.0 4 33.48020148630029 34.0 34.0 34.0 34.0 34.0 5 33.56163176797452 34.0 34.0 34.0 34.0 34.0 6 37.2827132886088 38.0 38.0 38.0 37.0 38.0 7 37.31033859637234 38.0 38.0 38.0 37.0 38.0 8 37.2396828623704 38.0 38.0 38.0 36.0 38.0 9 37.11486074405367 38.0 38.0 38.0 36.0 38.0 10-11 37.07012491247092 38.0 37.5 38.0 35.5 38.0 12-13 37.22960854735606 38.0 38.0 38.0 36.5 38.0 14-15 37.237107813241174 38.0 38.0 38.0 36.0 38.0 16-17 37.0191547514174 38.0 38.0 38.0 35.0 38.0 18-19 36.79495606604775 38.0 37.5 38.0 34.0 38.0 20-21 36.921404531182944 38.0 37.5 38.0 35.0 38.0 22-23 36.97943348919157 38.0 37.5 38.0 35.5 38.0 24-25 37.12720516816878 38.0 38.0 38.0 36.0 38.0 26-27 36.99148426735334 38.0 38.0 38.0 35.5 38.0 28-29 36.15908834225565 38.0 37.0 38.0 33.0 38.0 30-31 36.253393869576016 38.0 37.0 38.0 34.0 38.0 32-33 36.4566081633575 38.0 37.0 38.0 34.0 38.0 34-35 36.63618395789569 38.0 37.0 38.0 35.0 38.0 36-37 36.502202344649994 38.0 37.0 38.0 34.0 38.0 38-39 33.711786496803775 37.0 34.0 38.0 24.0 38.0 40-41 35.7279031420117 37.5 36.5 38.0 30.5 38.0 42-43 36.92827132886088 38.0 37.0 38.0 35.0 38.0 44-45 36.700447245375074 38.0 37.0 38.0 34.5 38.0 46-47 36.88608795825709 38.0 37.0 38.0 35.5 38.0 48-49 36.356926656276116 38.0 37.0 38.0 34.0 38.0 50-51 36.40877775518963 38.0 37.0 38.0 33.5 38.0 52-53 36.317250570350794 38.0 37.0 38.0 34.0 38.0 54-55 36.39222064105171 38.0 37.0 38.0 34.0 38.0 56-57 36.23962639199476 38.0 37.0 38.0 34.0 38.0 58-59 36.19205574755483 38.0 37.0 38.0 34.0 38.0 60-61 35.68053579092408 38.0 37.0 38.0 31.0 38.0 62-63 35.62815387047955 38.0 36.5 38.0 31.5 38.0 64-65 36.21326602064557 38.0 37.0 38.0 34.0 38.0 66-67 35.734611822637845 38.0 36.5 38.0 32.0 38.0 68-69 35.49534684104719 38.0 36.0 38.0 31.0 38.0 70-71 31.983228298434643 36.0 29.0 38.0 18.0 38.0 72-73 25.86433556956021 25.0 16.0 38.0 10.0 38.0 74-75 24.833333333333336 24.0 11.0 38.0 11.0 38.0 76 24.9255946330555 25.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 22 3.0 23 4.0 24 11.0 25 27.0 26 82.0 27 164.0 28 313.0 29 503.0 30 825.0 31 1239.0 32 1918.0 33 2943.0 34 5285.0 35 11562.0 36 9431.0 37 9961.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 15.514318649277852 8.622832990529576 12.340935289198292 63.52191307099429 2 7.65512412188566 8.156581057577196 66.80671319825619 17.38158162228095 3 7.600912561270358 9.909421517471934 68.43306001671523 14.056605904542478 4 5.443744211786497 55.21221567165865 26.066725395857333 13.277314720697522 5 5.479885252196698 22.007634794786654 65.81283458697568 6.699645366040976 6 11.097558220957286 66.9806419552303 13.792324546542883 8.129475277269545 7 9.744528020600393 20.388064421404533 13.625172234645705 56.24223532334936 8 9.229518194755032 66.31880915271849 8.721284813986582 15.730387838539903 9 8.804860969935172 14.991755325156422 7.871970364346864 68.33141334056154 10-11 9.821327731472069 39.23787581034989 34.84335117797204 16.097445280206006 12-13 9.814551286395156 11.273745792957014 40.27354249960471 38.638160421043125 14-15 9.973797745702605 9.493799552754625 14.567098100336565 65.96530460120621 16-17 37.18235413701972 34.56890515235707 8.831966750242822 19.416773960380386 18-19 39.09218224119627 16.431749904000363 9.114318628447517 35.361749226355855 20-21 12.036095864109688 10.258408438932936 9.232906417293488 68.4725892796639 22-23 10.082220866933207 38.05425673691582 9.271306272729326 42.59221612342166 24-25 36.936977637226114 37.928619832843914 9.135983736164444 15.998418793765529 26-27 39.159946691965395 41.856971832576626 9.22048293465248 9.762598540805493 28-29 12.21002462108378 40.77048180524497 10.285514219240586 36.733979354430666 30-31 10.072056199317837 43.23484899821553 34.72589279663889 11.967202005827742 32-33 61.35619254139279 13.362020284158929 16.298479817487745 8.98330735696054 34-35 18.520024395202277 34.84222177045922 37.71317566804455 8.924578166293962 36-37 36.228004788687855 40.27580131463034 13.560796006415035 9.935397890266765 38-39 12.084660387160895 16.42384405141063 36.78141446996905 34.71008109145942 40-41 9.26791805019087 9.967021300625692 41.044927830859926 39.720132818323506 42-43 36.62668564071288 9.470081994985431 38.52183144722279 15.3814009170789 44-45 11.662261977366674 36.4053217682004 41.3916559372953 10.540760317137629 46-47 36.15007567030336 11.515439000700232 17.652639425357457 34.68184590363895 48-49 35.18556165435612 9.031871880011746 12.14564839285311 43.63691807277902 50-51 13.763499164068502 9.20089467263115 39.663819981022094 37.37178618227826 52-53 7.926340168333051 9.357735976953059 66.32661130881772 16.389312545896175 54-55 7.636417053685436 9.461337672463474 44.58682215216335 38.31542312168774 56-57 35.149001570816715 9.436201109742454 18.162709489315056 37.25208783012578 58-59 10.589577614351397 10.710452886885598 62.70376520825567 15.996204290507338 60-61 35.07089193921934 35.889962153307344 18.602496751962942 10.436649155510365 62-63 9.714518115164319 69.60357897353052 9.592507653896993 11.089395257408182 64-65 7.212162971162643 73.01736115033151 9.052196405778767 10.718279472727067 66-67 7.403432264187182 72.36790076034029 8.96365505631941 11.26501191915312 68-69 7.346164272160477 72.28133188759375 8.944384205295021 11.428119634950756 70-71 8.265937740026205 67.44905796774047 9.542312384222654 14.742691908010663 72-73 10.391414854560859 55.87687094041232 11.92770403840723 21.8040101666196 74-75 12.204213023098209 50.0751115378099 13.245609081154347 24.47506635793754 76 11.724309304899814 51.87837440983125 12.612103824519394 23.78521246074954 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 2.5 15 4.5 16 5.0 17 4.0 18 3.0 19 3.0 20 6.0 21 8.0 22 14.5 23 29.5 24 49.0 25 60.0 26 76.0 27 92.0 28 106.0 29 120.0 30 142.5 31 185.5 32 206.5 33 207.0 34 265.5 35 343.0 36 439.0 37 516.0 38 656.5 39 3589.0 40 7824.0 41 8533.0 42 7799.0 43 6282.5 44 3763.5 45 2178.0 46 1595.0 47 1352.5 48 1016.5 49 852.0 50 781.0 51 725.5 52 630.5 53 545.0 54 499.0 55 492.0 56 484.5 57 433.5 58 383.0 59 384.5 60 371.0 61 323.0 62 290.0 63 291.0 64 275.0 65 211.5 66 189.5 67 214.0 68 186.5 69 140.5 70 110.0 71 98.0 72 98.5 73 89.5 74 73.0 75 66.0 76 52.5 77 33.5 78 28.0 79 28.0 80 28.0 81 20.5 82 14.5 83 16.0 84 9.5 85 4.0 86 2.5 87 0.0 88 0.5 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.06324682071785141 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0022588150256375506 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.020329335230737954 52-53 0.030494002846106934 54-55 0.05082333807684489 56-57 0.059858598179395095 58-59 0.02371755776919428 60-61 0.030494002846106934 62-63 0.028235187820469382 64-65 0.012423482641006527 66-67 0.03275281787174448 68-69 0.0067764450769126515 70-71 0.011294075128187753 72-73 0.01919992771791918 74-75 0.007905852589731427 76 0.009035260102550203 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 44271.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.581667457251925 #Duplication Level Percentage of deduplicated Percentage of total 1 55.335102087899415 10.83553567798333 2 16.47248817626024 6.451175713220844 3 11.373860883608259 6.681574845835875 4 7.232668127811744 5.665108084298977 5 3.956627061944861 3.873867768968399 6 2.145576191025493 2.5208375686115065 7 1.3265659245587726 1.818346095638228 8 0.5421617256892376 0.849314449639719 9 0.32298996424039683 0.5692213864606628 >10 1.0266466720498328 3.5124573648663913 >50 0.126888914523013 1.6850760091256127 >100 0.09228284692582767 4.2330193580447695 >500 0.011535355865728458 1.1655485532289762 >1k 0.023070711731456917 8.228863138397596 >5k 0.0 0.0 >10k+ 0.011535355865728458 41.91005398567911 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT 18554 41.91005398567911 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 2308 5.213345079171466 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 1335 3.01551805922613 No Hit ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT 516 1.1655485532289762 RNA PCR Primer, Index 47 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 487 1.100042917485487 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT 304 0.6866797677938153 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT 292 0.6595739874861647 No Hit CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 228 0.5150098258453615 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATATCGTATGCCGT 165 0.37270447923019584 No Hit CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 160 0.3614104041020081 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAGCTCGTATGCCGT 123 0.27783424815341873 No Hit CTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 115 0.2597637279483183 No Hit CTTATACACATCTCCGAGCCCACGAGACCATGGTAGATCTCGTATGCCGT 88 0.19877572225610443 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCG 87 0.1965169072304669 No Hit TATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCT 78 0.17618757199972895 No Hit CCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 75 0.1694111269228163 No Hit CTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 71 0.16037586682026608 No Hit TCTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 69 0.155858236768991 No Hit TTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 62 0.14004653158952812 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCAGT 57 0.12875245646134037 No Hit CTTATACACATCTCCGAGCCCACGAGACACTGGTAGATCTCGTATGCCGT 55 0.12423482641006527 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTCGATCTCGTATGCCGT 52 0.11745838133315263 No Hit CTTATACACATCTCCGAGCCCACGAGAAAATGGTAGATCTCGTATGCCGT 52 0.11745838133315263 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGGTAGATCTCGTATGCCGT 49 0.11068193625623998 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATATCGTATGCCG 48 0.10842312123060242 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.022588150256375505 0.0 2 0.0 0.0 0.0 0.022588150256375505 0.0 3 0.0 0.0 0.0 0.022588150256375505 0.0 4 0.0 0.0 0.0 0.13778771656389058 0.0 5 0.0 0.0 0.0 0.16037586682026608 0.0 6 0.0 0.0 0.0 0.17618757199972895 0.0 7 0.0 0.0 0.0 0.1784463870253665 0.0 8 0.0 0.0 0.0 0.18522283210227913 0.0 9 0.0 0.0 0.0 0.1919992771791918 0.0 10 0.0 0.0 0.0 0.2100697973842922 0.0 11 0.0 0.0 0.0 0.2100697973842922 0.0 12 0.0 0.0 0.0 0.2100697973842922 0.0 13 0.0 0.0 0.0 0.21232861240992976 0.0 14 0.0 0.0 0.0 0.22588150256375505 0.0 15 0.0 0.0 0.0 0.22588150256375505 0.0 16 0.0 0.0 0.0 0.22588150256375505 0.0 17 0.0 0.0 0.0 0.22588150256375505 0.0 18 0.0 0.0 0.0 0.22588150256375505 0.0 19 0.0 0.0 0.0 0.22588150256375505 0.0 20 0.0 0.0 0.0 0.22588150256375505 0.0 21 0.0 0.0 0.0 0.2281403175893926 0.0 22 0.0 0.0 0.0 0.2281403175893926 0.0 23 0.0 0.0 0.0 0.23039913261503014 0.0 24 0.0 0.0 0.0 0.23491676266630526 0.0 25 0.0 0.0 0.0 0.23943439271758035 0.0 26 0.0 0.0 0.0 0.2416932077432179 0.0 27 0.0 0.0 0.0 0.2620225429739559 0.0 28 0.0 0.0 0.0 0.2846106932303314 0.0 29 0.0 0.0 0.0 0.311716473537982 0.0 30 0.0 0.0 0.0 0.34108106887127015 0.0 31 0.0 0.0 0.0 0.3659280341532832 0.0 32 0.0 0.0 0.0 0.3975514445122089 0.0 33 0.0 0.0 0.0 0.44272774502495993 0.0 34 0.0 0.0 0.0 0.5263039009735493 0.0 35 0.0 0.0 0.0 0.6347270222041517 0.0 36 0.0 0.0 0.0 0.7792911838449549 0.0 37 0.0 0.0 0.0 1.1023017325111246 0.0 38 0.0 0.0 0.0 1.5405118474848094 0.0 39 0.0 0.0 0.0 1.8386754308689661 0.0 40 0.0 0.0 0.0 2.3853086670732533 0.0 41 0.0 0.0 0.0 2.8167423369700257 0.0 42 0.0 0.0 0.0 3.2797994172257234 0.0 43 0.0 0.0 0.0 3.79029161301981 0.0 44 0.0 0.0 0.0 4.167513722301281 0.0 45 0.0 0.0 0.0 4.5899121320955025 0.0 46 0.0 0.0 0.0 5.014569356915362 0.0 47 0.0 0.0 0.0 5.409861986401934 0.0 48 0.0 0.0 0.0 5.811931060965417 0.0 49 0.0 0.0 0.0 6.1394592396828624 0.0 50 0.0 0.0 0.0 6.539269499220709 0.0 51 0.0 0.0 0.0 6.887127013168891 0.0 52 0.0 0.0 0.0 7.325337128142577 0.0 53 0.0 0.0 0.0 7.704818052449685 0.0 54 0.0 0.0 0.0 8.149804612500283 0.0 55 0.0 0.0 0.0 8.502179756499741 0.0 56 0.0 0.0 0.0 8.813896230037722 0.0 57 0.0 0.0 0.0 9.033001287524565 0.0 58 0.0 0.0 0.0 9.238553454857582 0.0 59 0.0 0.0 0.0 9.466693772446975 0.0 60 0.0 0.0 0.0 9.791963136138781 0.0 61 0.0 0.0 0.0 10.047209234035824 0.0 62 0.0 0.0 0.0 10.37473741275327 0.0 63 0.0 0.0 0.0 10.609654175419575 0.0 64 0.0 0.0 0.0 10.842312123060243 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATTGAA 20 7.777702E-5 70.12117 56 TCTGATT 20 7.777702E-5 70.12117 53 CAGTCTT 15 0.0022055043 70.041855 47 AGTCTTC 15 0.0022055043 70.041855 48 GTATGCA 15 0.0022154322 69.962715 42 CAATGGC 15 0.0022154322 69.962715 9 TATGCAG 15 0.0022154322 69.962715 43 CTCTCGT 15 0.0022154322 69.962715 37 TAGCTCT 15 0.0022154322 69.962715 34 ATGAATA 15 0.0022154322 69.962715 25 TTTGGTA 15 0.0022154322 69.962715 5 GTAGCTC 15 0.0022154322 69.962715 33 AATGAGT 15 0.0022154322 69.962715 31 ATATATG 15 0.0022154322 69.962715 37 GAGACAT 15 0.0022154322 69.962715 24 AGCTCTC 20 7.86554E-5 69.96271 35 CGAGACG 20 7.86554E-5 69.96271 23 GCTCTCG 20 7.86554E-5 69.96271 36 GAGACGA 20 7.86554E-5 69.96271 24 TCTTTAT 100 0.0 59.468307 1 >>END_MODULE