FastQCFastQC Report
Wed 25 May 2016
SRR1779823_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779823_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101664
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATACG207.9079684E-569.974925
CATGACG207.9272795E-569.9404811
TTGTCGA150.00222655769.9404839
CTCGGTG1200.061.25818644
TCGGTGG1100.060.46262445
TCCGACT308.343179E-658.3124220
GATCTCG1450.057.93877441
GTAGATC1850.056.70850438
GATACGC252.3848627E-455.97992326
GTCCATA252.3848627E-455.97992322
CGGTGGT700.055.0073546
TCTCGGT1150.054.78993243
GTGTAGA2200.054.07151436
AGATCTC2100.053.31421340
AAACTGG200.00693022952.50701570
CTCGTCG200.00693022952.50701544
ACCGCTA200.00693022952.50701542
TCGATCA200.00693022952.50701542
CGGTCGA200.00693022952.50701549
GCGTGGA200.00693022952.50701551
Produced by FastQC (version 0.11.5)