SRR1779823_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779823_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	101664
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	24577	24.17473245199874	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	3086	3.0354894554611267	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	1746	1.7174220963172806	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	659	0.6482137236386528	Illumina PCR Primer Index 9 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	626	0.6157538558388417	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAACTCGTATGCCGT	479	0.47115989927604657	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCGT	443	0.4357491344035253	No Hit
CTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	248	0.24394082467736858	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATATCGTATGCCGT	210	0.2065627950897073	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAGCTCGTATGCCGT	182	0.1790210890777463	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	179	0.1760701920050362	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	154	0.15147938306578532	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCG	141	0.1386921624173749	No Hit
TTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	106	0.10426502990242367	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	102	0.10033050047214354	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTATG	15	0.002204165	70.118835	50
CTTATGC	15	0.002204165	70.118835	51
CGTCTTA	15	0.0022084818	70.08428	48
AAACGCA	15	0.002212805	70.04976	69
TAACCGA	15	0.0022258116	69.94639	31
GCTTATA	15	0.0022258116	69.94639	3
TTAACCG	15	0.0022258116	69.94639	30
CGAGAAG	15	0.0022258116	69.94639	23
GTTAACT	20	7.9239675E-5	69.94638	3
TATGCAG	30	8.363388E-6	58.288654	43
GTATGCA	30	8.363388E-6	58.288654	42
TCTTTAT	115	0.0	54.76759	1
ATCTCGT	3740	0.0	53.11437	37
TCTCGTA	3725	0.0	53.046585	38
GATCTCG	3745	0.0	52.95007	36
CGTATGC	3960	0.0	52.72474	41
TGCCGTC	3915	0.0	52.719845	45
CTCGTAT	3915	0.0	52.705444	39
ATGCCGT	3915	0.0	52.705444	44
AGATCTC	3765	0.0	52.668793	35