##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779823_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 101664 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.484379918161785 34.0 34.0 34.0 34.0 34.0 2 33.58187755744413 34.0 34.0 34.0 34.0 34.0 3 33.73127163991187 34.0 34.0 34.0 34.0 34.0 4 33.491501416430594 34.0 34.0 34.0 34.0 34.0 5 33.56445742839156 34.0 34.0 34.0 34.0 34.0 6 37.20728084671073 38.0 38.0 38.0 36.0 38.0 7 37.27389242996538 38.0 38.0 38.0 36.0 38.0 8 37.15997796663519 38.0 38.0 38.0 36.0 38.0 9 37.06810670443815 38.0 38.0 38.0 36.0 38.0 10-11 37.01676601353478 38.0 37.5 38.0 35.5 38.0 12-13 37.20819070664149 38.0 38.0 38.0 36.0 38.0 14-15 37.233538912496066 38.0 38.0 38.0 36.0 38.0 16-17 37.082084120239216 38.0 38.0 38.0 36.0 38.0 18-19 36.91549614416116 38.0 37.5 38.0 34.5 38.0 20-21 36.962769515265975 38.0 37.5 38.0 35.0 38.0 22-23 36.98127655807366 38.0 37.5 38.0 35.5 38.0 24-25 37.12340159741895 38.0 38.0 38.0 36.0 38.0 26-27 36.96933034309097 38.0 38.0 38.0 35.5 38.0 28-29 36.37172942241108 38.0 37.0 38.0 34.0 38.0 30-31 36.8067113235757 38.0 37.0 38.0 35.0 38.0 32-33 36.77154154863078 38.0 37.0 38.0 35.0 38.0 34-35 36.830210300598054 38.0 37.0 38.0 35.0 38.0 36-37 36.77609576644633 38.0 37.0 38.0 34.5 38.0 38-39 35.074052762039656 38.0 35.5 38.0 28.5 38.0 40-41 36.222295994649045 38.0 37.0 38.0 33.0 38.0 42-43 36.973987842304055 38.0 37.5 38.0 35.5 38.0 44-45 36.71861720963173 38.0 37.0 38.0 34.5 38.0 46-47 36.89715140069248 38.0 37.5 38.0 35.5 38.0 48-49 36.450365911237014 38.0 37.0 38.0 34.0 38.0 50-51 36.56325247875354 38.0 37.0 38.0 34.0 38.0 52-53 36.461028485993076 38.0 37.0 38.0 34.0 38.0 54-55 36.50221317280453 38.0 37.0 38.0 34.0 38.0 56-57 36.33469566414857 38.0 37.0 38.0 34.0 38.0 58-59 36.37996242524394 38.0 37.0 38.0 34.0 38.0 60-61 35.95274138338055 38.0 37.0 38.0 32.5 38.0 62-63 35.795891367642426 38.0 37.0 38.0 31.5 38.0 64-65 36.312190155807365 38.0 37.0 38.0 34.0 38.0 66-67 35.97144515265974 38.0 37.0 38.0 32.5 38.0 68-69 35.917950306893296 38.0 37.0 38.0 31.0 38.0 70-71 33.941773882593644 37.5 34.0 38.0 21.0 38.0 72-73 30.43994432640856 37.0 23.0 38.0 11.0 38.0 74-75 29.933511370790054 37.0 23.0 38.0 11.0 38.0 76 29.797509442870634 37.0 23.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 2.0 22 5.0 23 19.0 24 39.0 25 91.0 26 163.0 27 295.0 28 539.0 29 840.0 30 1459.0 31 2238.0 32 3250.0 33 5294.0 34 8826.0 35 18685.0 36 19829.0 37 40088.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.38949025782326 11.11198582956111 9.801220232237748 47.69730368037788 2 16.75716084356311 13.753147623544223 48.52553509600252 20.964156436890146 3 16.670601196096946 14.435788479697829 49.6094979540447 19.28411237016053 4 12.320978910922253 38.78068932955618 26.675125904941773 22.223205854579792 5 12.709513692162416 25.34722222222222 49.50129839471199 12.441965690903368 6 20.868744098205855 50.679689959080896 15.938778722064843 12.512787220648411 7 19.368704752911555 23.457664463330186 16.113865281712307 41.059765502045956 8 17.779154863078375 49.34785174693106 14.054139124960654 18.818854265029902 9 16.935198300283286 16.324362606232295 12.670168397859616 54.0702706956248 10-11 18.327038086244883 32.40281712307208 29.447493704752915 19.822651085930122 12-13 17.825385583884167 15.670738904627008 33.0751298394712 33.42874567201763 14-15 17.25586244885112 14.692516525023608 17.586854737173436 50.46476628895184 16-17 33.202018413597735 29.74405886056028 14.398410450110166 22.655512275731823 18-19 33.954005350960024 19.132141170915958 15.30531948378974 31.608533994334277 20-21 18.92262747875354 15.88664620711363 14.81940509915014 50.371321214982686 22-23 17.451605288007556 31.627714825306892 15.137610166824048 35.7830697198615 24-25 32.944463024532276 31.23340087741732 14.97708091518955 20.845055182860854 26-27 34.269751337740004 33.06922804532578 15.565490242367014 17.095530374567204 28-29 31.693618193264083 19.59198929807995 16.16796506137866 32.5464274472773 30-31 20.210694050991503 16.498957349700976 44.62199008498583 18.668358514321685 32-33 16.6622403210576 45.47775023607177 20.7162810827825 17.143728360088133 34-35 16.561418004406672 34.49254406672962 16.308624488511175 32.63741344035254 36-37 32.036905886056026 33.08890069247718 16.18173591438464 18.692457507082153 38-39 18.136213408876298 19.12574756059175 30.973107491344038 31.764931539187913 40-41 16.583549732452 15.518767705382436 33.68694916587976 34.210733396285804 42-43 32.21346789423985 15.07514951211835 32.62019987409506 20.091182719546744 44-45 17.33061850802644 30.31850015738118 34.375 17.975881334592383 46-47 31.011469153289266 16.410430437519672 21.29564054139125 31.282459867799812 48-49 30.172922568460812 14.799240635819954 18.271954674220964 36.75588212149827 50-51 17.71291404735905 15.250027053881492 33.80407087133174 33.232988027427716 52-53 14.514050139714275 15.175725136762564 49.442126805462635 20.86809791806053 54-55 14.246560513315096 15.175566358966282 36.837443659338284 33.74042946838034 56-57 29.775623677606657 15.18673424199183 21.652807164296608 33.38483491610491 58-59 15.535580745463848 15.810111386625733 47.04116975636636 21.61313811154406 60-61 29.514180995252502 30.337736452414337 21.90047474971097 18.24760780262219 62-63 15.08683032419934 49.44507305554189 16.785064200324694 18.68303241993408 64-65 13.577338147189893 51.01031962302388 16.3284178217627 19.08392440802353 66-67 13.674469404020426 51.3849120839114 15.51150731568124 19.429111196386927 68-69 13.853229059072353 51.46033151345236 15.502434705621956 19.184004721853327 70-71 14.563340793389242 48.63185853766508 15.7595730552618 21.045227613683874 72-73 15.361949549407736 41.85293770414387 17.24105702254929 25.5440557238991 74-75 16.163399818007427 38.760974889943675 18.26024937901183 26.815375913037066 76 15.827996340347667 39.90693464766009 17.6096174089268 26.65545160306545 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 7.0 16 12.5 17 12.0 18 28.5 19 40.0 20 56.0 21 77.0 22 90.5 23 112.0 24 139.5 25 159.0 26 185.0 27 263.5 28 373.0 29 430.0 30 498.5 31 642.0 32 756.0 33 795.0 34 950.5 35 1231.5 36 1428.5 37 1500.0 38 1750.0 39 5816.5 40 11564.0 41 12384.0 42 11273.0 43 9370.5 44 6157.5 45 4204.0 46 3561.0 47 3296.5 48 2976.0 49 2892.0 50 2864.0 51 2771.0 52 2824.5 53 2864.5 54 2758.0 55 2759.0 56 2627.5 57 2494.0 58 2493.0 59 2276.5 60 1954.5 61 1703.5 62 1558.0 63 1473.0 64 1323.0 65 1198.0 66 1083.5 67 1029.0 68 963.5 69 834.5 70 735.5 71 700.0 72 664.5 73 595.5 74 578.0 75 594.0 76 498.5 77 413.5 78 361.0 79 298.0 80 301.0 81 283.0 82 234.0 83 206.0 84 193.0 85 143.0 86 100.5 87 95.0 88 76.5 89 53.0 90 28.5 91 10.0 92 11.0 93 8.5 94 5.5 95 3.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04327982373308152 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0019672647151400694 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.014754485363550519 52-53 0.027541706011960966 54-55 0.049181617878501734 56-57 0.04819798552093169 58-59 0.03541076487252125 60-61 0.03098441926345609 62-63 0.028525338369531004 64-65 0.01278722064841045 66-67 0.032459867799811144 68-69 0.008852691218130312 70-71 0.0113117721120554 72-73 0.019672647151400692 74-75 0.0113117721120554 76 0.014754485363550519 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 101664.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.134482215926976 #Duplication Level Percentage of deduplicated Percentage of total 1 44.04408033060248 11.95113314447592 2 18.46951352135141 10.023213723638653 3 14.191981439860799 11.552762039660056 4 9.860073950554629 10.701920050361977 5 5.981294859711448 8.114966949952786 6 3.7047777858333935 6.031633616619452 7 1.95751468136011 3.7181303116147304 8 0.8808816066120495 1.9121813031161474 9 0.3625027187703908 0.8852691218130312 >10 0.4531283984629885 1.9407066414856782 >50 0.039875299064742985 0.7692005036197671 >100 0.036250271877039074 2.207271010387158 >500 0.007250054375407816 1.2639675794774945 >1k 0.007250054375407816 4.752911551778408 >5k 0.0 0.0 >10k+ 0.003625027187703908 24.17473245199874 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT 24577 24.17473245199874 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG 3086 3.0354894554611267 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC 1746 1.7174220963172806 No Hit ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT 659 0.6482137236386528 Illumina PCR Primer Index 9 (95% over 22bp) TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC 626 0.6157538558388417 No Hit CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAACTCGTATGCCGT 479 0.47115989927604657 No Hit CTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCGT 443 0.4357491344035253 No Hit CTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC 248 0.24394082467736858 No Hit CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATATCGTATGCCGT 210 0.2065627950897073 No Hit CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAGCTCGTATGCCGT 182 0.1790210890777463 No Hit CTTTACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC 179 0.1760701920050362 No Hit CTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG 154 0.15147938306578532 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCG 141 0.1386921624173749 No Hit TTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC 106 0.10426502990242367 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC 102 0.10033050047214354 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009836323575700346 0.0 2 0.0 0.0 0.0 0.009836323575700346 0.0 3 0.0 0.0 0.0 0.013770853005980485 0.0 4 0.0 0.0 0.0 0.014754485363550519 0.0 5 0.0 0.0 0.0 0.019672647151400692 0.0 6 0.0 0.0 0.0 0.022623544224110795 0.0 7 0.0 0.0 0.0 0.023607176581680833 0.0 8 0.0 0.0 0.0 0.023607176581680833 0.0 9 0.0 0.0 0.0 0.024590808939250867 0.0 10 0.0 0.0 0.0 0.02754170601196097 0.0 11 0.0 0.0 0.0 0.030492603084671072 0.0 12 0.0 0.0 0.0 0.03344350015738118 0.0 13 0.0 0.0 0.0 0.03639439723009128 0.0 14 0.0 0.0 0.0 0.04032892666037142 0.0 15 0.0 0.0 0.0 0.0481979855209317 0.0 16 0.0 0.0 0.0 0.05508341202392194 0.0 17 0.0 0.0 0.0 0.05705067673906201 0.0 18 0.0 0.0 0.0 0.06491973559962229 0.0 19 0.0 0.0 0.0 0.07377242681775259 0.0 20 0.0 0.0 0.0 0.07573969153289267 0.0 21 0.0 0.0 0.0 0.07869058860560277 0.0 22 0.0 0.0 0.0 0.07967422096317281 0.0 23 0.0 0.0 0.0 0.08164148567831288 0.0 24 0.0 0.0 0.0 0.08754327982373308 0.0 25 0.0 0.0 0.0 0.0963959710418634 0.0 26 0.0 0.0 0.0 0.10426502990242367 0.0 27 0.0 0.0 0.0 0.12197041233868429 0.0 28 0.0 0.0 0.0 0.16033207428391563 0.0 29 0.0 0.0 0.0 0.18787378029587662 0.0 30 0.0 0.0 0.0 0.24787535410764872 0.0 31 0.0 0.0 0.0 0.32066414856783126 0.0 32 0.0 0.0 0.0 0.4023056342461442 0.0 33 0.0 0.0 0.0 0.5036197670758578 0.0 34 0.0 0.0 0.0 0.6590336795719232 0.0 35 0.0 0.0 0.0 0.8272348127163991 0.0 36 0.0 0.0 0.0 1.054453887315077 0.0 37 0.0 0.0 0.0 1.4351196096946806 0.0 38 0.0 0.0 0.0 1.902344979540447 0.0 39 0.0 0.0 0.0 2.449244570349386 0.0 40 0.0 0.0 0.0 3.070900220333648 0.0 41 0.0 0.0 0.0 3.6718995908089394 0.0 42 0.0 0.0 0.0 4.339785961598992 0.0 43 0.0 0.0 0.0 4.927014479068303 0.0 44 0.0 0.0 0.0 5.527030217186025 0.0 45 0.0 0.0 0.0 6.1909820585457975 0.0 46 0.0 0.0 0.0 6.921820900220333 0.0 47 0.0 0.0 0.0 7.6300361976707585 0.0 48 0.0 0.0 0.0 8.359891406987725 0.0 49 0.0 0.0 0.0 8.993350645262826 0.0 50 0.0 0.0 0.0 9.726156751652502 0.0 51 0.0 0.0 0.0 10.328139754485363 0.0 52 0.0 0.0 0.0 10.933073654390935 0.0 53 0.0 0.0 0.0 11.549811142587346 0.0 54 0.0 0.0 0.0 12.175401322001889 0.0 55 0.0 0.0 0.0 12.855091281082782 0.0 56 0.0 0.0 0.0 13.504288637079005 0.0 57 0.0 0.0 0.0 14.141682404784389 0.0 58 0.0 0.0 0.0 14.766288951841359 0.0 59 0.0 0.0 0.0 15.34958293988039 0.0 60 0.0 0.0 0.0 15.90828611898017 0.0 61 0.0 0.0 0.0 16.389282341831915 0.0 62 0.0 0.0 0.0 16.924378344350014 0.0 63 0.0 0.0 0.0 17.471277935158955 0.0 64 0.0 0.0 0.0 17.968995908089394 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTTATG 15 0.002204165 70.118835 50 CTTATGC 15 0.002204165 70.118835 51 CGTCTTA 15 0.0022084818 70.08428 48 AAACGCA 15 0.002212805 70.04976 69 TAACCGA 15 0.0022258116 69.94639 31 GCTTATA 15 0.0022258116 69.94639 3 TTAACCG 15 0.0022258116 69.94639 30 CGAGAAG 15 0.0022258116 69.94639 23 GTTAACT 20 7.9239675E-5 69.94638 3 TATGCAG 30 8.363388E-6 58.288654 43 GTATGCA 30 8.363388E-6 58.288654 42 TCTTTAT 115 0.0 54.76759 1 ATCTCGT 3740 0.0 53.11437 37 TCTCGTA 3725 0.0 53.046585 38 GATCTCG 3745 0.0 52.95007 36 CGTATGC 3960 0.0 52.72474 41 TGCCGTC 3915 0.0 52.719845 45 CTCGTAT 3915 0.0 52.705444 39 ATGCCGT 3915 0.0 52.705444 44 AGATCTC 3765 0.0 52.668793 35 >>END_MODULE