FastQCFastQC Report
Wed 25 May 2016
SRR1779822_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779822_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49862
Sequences flagged as poor quality0
Sequence length76
%GC50

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGGTG207.855683E-569.9979932
CATGATA150.002212657469.9979911
GACGTTG150.002212657469.9979914
TAGGTGT252.8017766E-669.9979933
TAGGTGG150.002212657469.9979945
ATATGTG150.002212657469.9979932
TCTAGGT150.002212657469.9979943
CATTAAA550.069.9979961
TGACATC150.002212657469.997993
TCGCTCT150.002212657469.9979939
TTGTTTC150.002212657469.9979949
CGGTATG150.002212657469.9979924
GTGGTCG550.069.9979948
CTTAGGT150.002212657469.9979931
TACGTTT150.002212657469.9979933
TGGTCGC550.063.6345449
TCATTAA401.0399162E-861.24824560
GGTCGCC700.059.99828350
CGTATCA650.059.22907356
CGAATAG308.264986E-658.33166525
Produced by FastQC (version 0.11.5)