##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779822_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 49862 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.49947856082788 34.0 34.0 34.0 34.0 34.0 2 33.59221451205327 34.0 34.0 34.0 34.0 34.0 3 33.73905980506197 34.0 34.0 34.0 34.0 34.0 4 33.491215755485136 34.0 34.0 34.0 34.0 34.0 5 33.607055473105774 34.0 34.0 34.0 34.0 34.0 6 37.31155990533873 38.0 38.0 38.0 37.0 38.0 7 37.32690225021058 38.0 38.0 38.0 37.0 38.0 8 37.26653563836188 38.0 38.0 38.0 36.0 38.0 9 37.12799326140147 38.0 38.0 38.0 36.0 38.0 10-11 37.0931771689864 38.0 37.5 38.0 35.5 38.0 12-13 37.271760057759415 38.0 38.0 38.0 36.5 38.0 14-15 37.28746339898119 38.0 38.0 38.0 36.5 38.0 16-17 37.05630540291203 38.0 38.0 38.0 35.5 38.0 18-19 36.81105852151939 38.0 37.5 38.0 34.0 38.0 20-21 36.90756487906623 38.0 37.5 38.0 35.0 38.0 22-23 37.058992820183704 38.0 38.0 38.0 36.0 38.0 24-25 37.1278127632265 38.0 38.0 38.0 36.0 38.0 26-27 36.94537924672095 38.0 37.5 38.0 35.5 38.0 28-29 36.074234888291684 38.0 37.0 38.0 32.5 38.0 30-31 36.27236171834262 38.0 37.0 38.0 33.0 38.0 32-33 36.200994745497574 38.0 37.0 38.0 34.0 38.0 34-35 36.10029681922105 38.0 37.0 38.0 33.5 38.0 36-37 36.39437848461755 38.0 37.0 38.0 34.0 38.0 38-39 32.814818900164454 36.5 32.5 38.0 16.5 38.0 40-41 35.35006618266415 37.5 35.5 38.0 30.5 38.0 42-43 36.883498455737836 38.0 37.0 38.0 35.0 38.0 44-45 36.64992378965946 38.0 37.0 38.0 34.5 38.0 46-47 36.87608800288797 38.0 37.0 38.0 35.5 38.0 48-49 36.32788496249649 38.0 37.0 38.0 34.0 38.0 50-51 36.357306165015444 38.0 37.0 38.0 33.5 38.0 52-53 36.25159440054551 38.0 37.0 38.0 34.0 38.0 54-55 36.33619790622117 38.0 37.0 38.0 34.0 38.0 56-57 36.1747122056877 38.0 37.0 38.0 33.5 38.0 58-59 36.10848943082909 38.0 37.0 38.0 34.0 38.0 60-61 35.56089807869721 38.0 36.5 38.0 30.5 38.0 62-63 35.55066984878264 38.0 36.5 38.0 31.0 38.0 64-65 36.18454935622317 38.0 37.0 38.0 34.0 38.0 66-67 35.66395250892463 38.0 36.5 38.0 31.5 38.0 68-69 35.36749428422446 38.0 36.0 38.0 31.0 38.0 70-71 31.316363162328024 34.5 28.0 38.0 17.5 38.0 72-73 24.126830050940598 23.0 11.0 35.5 10.0 38.0 74-75 23.00433195619911 23.0 11.0 34.0 10.5 38.0 76 23.070815450643778 23.0 11.0 34.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 22 2.0 23 6.0 24 18.0 25 39.0 26 102.0 27 180.0 28 360.0 29 655.0 30 988.0 31 1507.0 32 2345.0 33 3793.0 34 6676.0 35 14680.0 36 10486.0 37 8025.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 11.062062323173546 6.778096594899371 12.777655155807935 69.38218592611915 2 5.485138983594721 5.842124262965786 72.45998957121655 16.212747182222937 3 5.876218362681 7.66114475953632 74.5517628655088 11.910874012273876 4 4.22566282940917 61.02442741967832 24.712205687698045 10.037704063214473 5 4.2457181821828245 20.033291885604267 70.85355581404677 4.8674341181661385 6 8.046207532790502 71.30079018089928 13.623601139144037 7.029401147166178 7 7.528779431230196 18.914203200834304 11.804580642573503 61.752436725362 8 6.455818057839638 71.03405398900968 7.077533993822952 15.432593959327745 9 6.367574505635554 14.546147366732182 6.158998836789539 72.92727929084273 10-11 7.178813525329911 41.92872327624243 36.085596245637966 14.806866952789699 12-13 7.5468292487264845 8.82535798804701 42.79411174842566 40.83370101480085 14-15 7.520757290120733 7.107617022983434 13.468172155148208 71.90345353174762 16-17 39.38871284745898 35.505996550479324 6.480887248806706 18.624403353254984 18-19 42.02799727247202 14.782800529461312 6.362560667442141 36.82664153062452 20-21 9.918374714211224 7.768440896875376 6.726565320283983 75.58661906862942 22-23 7.652119850788175 39.91316032249007 6.434759937427299 45.99995988929445 24-25 39.660860583817175 38.9669384194218 6.335549472037544 15.036651524723485 26-27 41.772291524607915 43.613372909229476 7.104608720067386 7.509726846095223 28-29 9.398941077373552 43.57326220368216 7.355300629738077 39.67249608920621 30-31 6.472865107697244 15.072600377040631 39.891099434439056 38.56343508082307 32-33 7.1918495046327875 38.91239821908468 10.8098351450002 43.08591713128234 34-35 7.012354097308572 11.091612851470058 39.52809754923589 42.367935501985485 36-37 38.48120813445108 35.6122899201797 11.180859171312823 14.725642774056396 38-39 10.376639525089246 14.773775620713167 38.280654606714535 36.56893024748305 40-41 6.972243391761261 7.184830131162006 43.234326741807386 42.608599735269344 42-43 39.19356617831393 6.691535553483148 39.93762722741995 14.17727104078297 44-45 9.589466928723276 38.396975652801736 43.722674581845894 8.290882836629097 46-47 38.903373310336534 9.455096065139786 15.961052504913562 35.68047811961013 48-49 37.44534916369179 6.29738077092776 9.14423809714813 47.11303196823232 50-51 12.87973763125959 6.362642542649964 41.20071810404485 39.556901722045595 52-53 6.12072943206211 6.42265331915662 72.28519268963028 15.171424559151003 54-55 5.804924052410859 6.552360695868531 47.47777755482874 40.16493769689187 56-57 38.095954731519384 6.416044626374508 16.485071032988202 39.002929609117906 58-59 9.275123889011496 7.671087213851494 68.38372489617399 14.670064000963023 60-61 37.55253944847372 36.769087243070814 17.59005687802823 8.088316430427238 62-63 8.427619964692665 76.29995185363505 7.194872412132884 8.0775557695394 64-65 5.315627946161715 80.42244197941949 6.4830601969791175 7.778869877439673 66-67 5.1620022068412075 80.37917544387602 6.337646704784833 8.121175644497944 68-69 5.299102441959585 80.00902572331144 6.254826254826256 8.437045579902723 70-71 5.995266367137356 74.58981867779204 7.375240693196405 12.039674261874197 72-73 8.280088668666059 59.92758056912445 9.873917971453503 21.91841279075599 74-75 9.948851669842544 53.47106609166583 11.5194062782068 25.06067596028483 76 9.24718672898321 55.268489358714625 10.581108458869075 24.903215453433095 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.5 17 1.0 18 4.0 19 6.5 20 11.0 21 16.0 22 19.0 23 25.5 24 45.0 25 61.0 26 72.5 27 88.0 28 95.5 29 99.0 30 142.0 31 216.5 32 254.5 33 261.0 34 274.5 35 304.0 36 361.5 37 403.0 38 412.5 39 618.5 40 4470.0 41 9931.5 42 11738.0 43 10717.5 44 7682.0 45 4230.0 46 2793.0 47 2086.5 48 1133.5 49 718.5 50 550.0 51 529.0 52 524.5 53 499.0 54 457.0 55 496.0 56 500.0 57 472.5 58 480.0 59 429.5 60 357.5 61 351.0 62 366.0 63 339.5 64 273.0 65 213.5 66 185.0 67 176.0 68 159.0 69 128.5 70 110.0 71 105.0 72 95.5 73 75.0 74 60.0 75 56.0 76 44.0 77 35.5 78 25.0 79 11.0 80 11.5 81 11.0 82 5.5 83 1.0 84 2.0 85 3.0 86 2.5 87 2.0 88 1.0 89 0.0 90 1.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.050138381934138214 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0010027676386827646 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0010027676386827646 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.017047049857606994 52-53 0.030083029160482933 54-55 0.050138381934138214 56-57 0.05214391721150374 58-59 0.038105170269945046 60-61 0.037102402631262285 62-63 0.028077493883117408 64-65 0.01804981749628976 66-67 0.03409409971521399 68-69 0.00902490874814488 70-71 0.012033211664193173 72-73 0.027074726244434643 74-75 0.014038746941558704 76 0.01804981749628976 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 49862.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.20119529902531 #Duplication Level Percentage of deduplicated Percentage of total 1 57.506001977121876 8.166539649432433 2 13.61389634232453 3.866672014760739 3 9.306595113684509 3.9649432433516507 4 6.948171162265217 3.9468934258553605 5 4.716847902838582 3.349243913200433 6 3.234006496257591 2.7556054711002367 7 1.7370427905663042 1.7267658738117204 8 0.7626041519559384 0.8663912398219086 9 0.3954243750882644 0.5053948898961133 >10 1.355740714588335 3.4334763948497855 >50 0.1977121875441322 1.8811920901688661 >100 0.15534529021324672 4.843367694837752 >500 0.028244598220590313 2.362520556736593 >1k 0.028244598220590313 9.744895912719105 >5k 0.0 0.0 >10k+ 0.014122299110295156 48.586097629457306 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT 24226 48.586097629457306 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 3108 6.233203642052064 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 1751 3.5116922706670413 No Hit TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 600 1.2033211664193173 No Hit ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT 578 1.1591993903172757 RNA PCR Primer, Index 42 (95% over 22bp) CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT 485 0.9726846095222815 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT 424 0.8503469576029843 No Hit CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 266 0.5334723837792307 RNA PCR Primer, Index 32 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT 264 0.5294613132244996 No Hit CTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 195 0.39107937908627816 No Hit CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 166 0.3329188560426778 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGAGCTCGTATGCCGT 160 0.3208856443784846 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCG 126 0.2526974449480566 No Hit CCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 125 0.2506919096706911 No Hit TCTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 103 0.20657013356864948 No Hit CTTATACACATCTCCGAGCCCACGAGACATCCCTCGATCTCGTATGCCGT 101 0.2025590630139184 No Hit TTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 89 0.17849263968553208 RNA PCR Primer, Index 32 (95% over 21bp) CTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 85 0.17047049857606994 No Hit TATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCT 80 0.1604428221892423 RNA PCR Primer, Index 42 (95% over 21bp) TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCG 75 0.15041514580241466 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCG 71 0.14239300469295255 No Hit CTTATACACATCTCCGAGCCCACGAGACATAACTCGATCTCGTATGCCGT 70 0.14038746941558702 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCC 67 0.13437086358349043 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCAGT 65 0.13035979302875939 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTCTGCCGT 64 0.12835425775139386 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACCCGATCTCGTATGCCGT 60 0.12033211664193173 No Hit CTTATACACATCTCCGAGCCCACGAGACATTACTCGATCTCGTATGCCGT 54 0.10829890497773857 No Hit TCTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGC 53 0.10629336970037304 No Hit CTTATACACATCTCCGAGCCCACGAGACCTCACTCGATCTCGTATGCCGT 53 0.10629336970037304 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCC 52 0.10428783442300749 No Hit CTTATACACCTCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT 50 0.10027676386827643 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.01604428221892423 0.0 6 0.0 0.0 0.0 0.01604428221892423 0.0 7 0.0 0.0 0.0 0.01604428221892423 0.0 8 0.0 0.0 0.0 0.01604428221892423 0.0 9 0.0 0.0 0.0 0.01604428221892423 0.0 10 0.0 0.0 0.0 0.01804981749628976 0.0 11 0.0 0.0 0.0 0.028077493883117404 0.0 12 0.0 0.0 0.0 0.030083029160482933 0.0 13 0.0 0.0 0.0 0.03208856443784846 0.0 14 0.0 0.0 0.0 0.03208856443784846 0.0 15 0.0 0.0 0.0 0.038105170269945046 0.0 16 0.0 0.0 0.0 0.038105170269945046 0.0 17 0.0 0.0 0.0 0.038105170269945046 0.0 18 0.0 0.0 0.0 0.04612731137940716 0.0 19 0.0 0.0 0.0 0.05013838193413822 0.0 20 0.0 0.0 0.0 0.062171593598331396 0.0 21 0.0 0.0 0.0 0.062171593598331396 0.0 22 0.0 0.0 0.0 0.062171593598331396 0.0 23 0.0 0.0 0.0 0.10228229914564198 0.0 24 0.0 0.0 0.0 0.1042878344230075 0.0 25 0.0 0.0 0.0 0.1183265813645662 0.0 26 0.0 0.0 0.0 0.1183265813645662 0.0 27 0.0 0.0 0.0 0.12835425775139384 0.0 28 0.0 0.0 0.0 0.1383819341382215 0.0 29 0.0 0.0 0.0 0.1664594280213389 0.0 30 0.0 0.0 0.0 0.18852031607235972 0.0 31 0.0 0.0 0.0 0.22863102161967028 0.0 32 0.0 0.0 0.0 0.242669768561229 0.0 33 0.0 0.0 0.0 0.28077493883117405 0.0 34 0.0 0.0 0.0 0.33091332076531227 0.0 35 0.0 0.0 0.0 0.4392122257430508 0.0 36 0.0 0.0 0.0 0.5715775540491758 0.0 37 0.0 0.0 0.0 0.8623801692671774 0.0 38 0.0 0.0 0.0 1.0829890497773855 0.0 39 0.0 0.0 0.0 1.3858248766595804 0.0 40 0.0 0.0 0.0 1.6505555332718302 0.0 41 0.0 0.0 0.0 1.9092695840519835 0.0 42 0.0 0.0 0.0 2.16196702900004 0.0 43 0.0 0.0 0.0 2.4567807147727727 0.0 44 0.0 0.0 0.0 2.881954193574265 0.0 45 0.0 0.0 0.0 3.158718061850708 0.0 46 0.0 0.0 0.0 3.515703341221772 0.0 47 0.0 0.0 0.0 3.7663952508924634 0.0 48 0.0 0.0 0.0 4.021098231117885 0.0 49 0.0 0.0 0.0 4.295856564116963 0.0 50 0.0 0.0 0.0 4.542537403232923 0.0 51 0.0 0.0 0.0 4.7952348481809794 0.0 52 0.0 0.0 0.0 5.120131563114195 0.0 53 0.0 0.0 0.0 5.435000601660583 0.0 54 0.0 0.0 0.0 5.689703581886006 0.0 55 0.0 0.0 0.0 5.994544944045566 0.0 56 0.0 0.0 0.0 6.33348040592034 0.0 57 0.0 0.0 0.0 6.4718623400585615 0.0 58 0.0 0.0 0.0 6.684449079459307 0.0 59 0.0 0.0 0.0 6.864947254422205 0.0 60 0.0 0.0 0.0 7.101600417151338 0.0 61 0.0 0.0 0.0 7.292126268501063 0.0 62 0.0 0.0 0.0 7.49067426096025 0.0 63 0.0 0.0 0.0 7.7152942120251895 0.0 64 0.0 0.0 0.0 7.9078255986522805 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAACTC 15 0.0022153002 69.97694 29 AACTCGA 15 0.0022153002 69.97694 31 AACCACC 15 0.0022153002 69.97694 70 ATAGCTT 15 0.0022153002 69.97694 3 TAACTCG 15 0.0022153002 69.97694 30 TACAAGT 15 0.0022153002 69.97694 7 ACATAAC 15 0.0022153002 69.97694 27 TTTACAC 15 0.0022153002 69.97694 2 CATACAA 20 7.8674006E-5 69.97694 5 GAGACTT 15 0.0022153002 69.97694 24 TTGACAA 40 1.02591E-8 61.35289 58 CTTGACA 40 1.02591E-8 61.35289 57 TGAACAA 40 1.0340955E-8 61.29129 59 GAACAAA 35 2.924844E-7 59.980225 60 AACAAAG 30 8.279743E-6 58.31411 69 CTATACA 30 8.279743E-6 58.31411 1 CCTTATA 30 8.279743E-6 58.31411 1 ACAAAGA 25 2.3727011E-4 55.981544 70 ACCCGAT 25 2.3727011E-4 55.981544 32 GGCCCTG 25 2.3727011E-4 55.981544 7 >>END_MODULE