##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779821_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 308825 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.844096170970616 34.0 23.0 34.0 12.0 34.0 2 29.7496446207399 34.0 31.0 34.0 12.0 34.0 3 29.201486278636768 34.0 27.0 34.0 11.0 34.0 4 29.470768234436978 34.0 27.0 34.0 12.0 34.0 5 30.2567214441836 34.0 32.0 34.0 11.0 34.0 6 32.51920019428479 37.0 31.0 38.0 12.0 38.0 7 32.84833481745325 37.0 32.0 38.0 12.0 38.0 8 32.03653201651421 37.0 31.0 38.0 11.0 38.0 9 33.06594025742734 37.0 34.0 38.0 12.0 38.0 10-11 31.498767910629 37.0 28.5 38.0 11.5 38.0 12-13 32.38293855743544 37.0 31.0 38.0 11.0 38.0 14-15 31.12284141504088 36.5 26.5 38.0 11.0 38.0 16-17 31.793975552497372 37.0 28.5 38.0 11.0 38.0 18-19 32.77952885938639 37.0 32.0 38.0 11.5 38.0 20-21 31.318991338136485 36.5 27.5 38.0 11.0 38.0 22-23 32.299354003076175 37.0 30.0 38.0 11.0 38.0 24-25 32.63306889014814 37.0 32.0 38.0 11.0 38.0 26-27 31.455265927305106 37.0 26.5 38.0 11.0 38.0 28-29 32.77216060875901 37.0 32.5 38.0 11.0 38.0 30-31 33.26941471707278 38.0 34.0 38.0 11.0 38.0 32-33 33.36985995304784 38.0 34.0 38.0 16.0 38.0 34-35 33.27074718691816 38.0 34.0 38.0 16.0 38.0 36-37 32.69151461183518 37.0 32.5 38.0 11.0 38.0 38-39 32.63841334088885 37.0 32.5 38.0 11.0 38.0 40-41 32.61690601473326 37.0 32.0 38.0 11.0 38.0 42-43 33.056748967862056 37.5 33.0 38.0 16.0 38.0 44-45 33.15648830243666 38.0 34.0 38.0 11.0 38.0 46-47 33.051627944628834 38.0 34.0 38.0 11.0 38.0 48-49 32.69638468388246 37.0 32.5 38.0 11.0 38.0 50-51 31.995654496883347 37.0 29.5 38.0 11.0 38.0 52-53 32.62007285679592 37.0 32.0 38.0 11.0 38.0 54-55 32.78811138994576 37.0 32.5 38.0 11.0 38.0 56-57 32.89998866672063 37.0 33.0 38.0 11.0 38.0 58-59 33.211993847648344 38.0 34.0 38.0 11.0 38.0 60-61 33.02512264227313 37.0 34.0 38.0 11.0 38.0 62-63 33.06267951104995 37.0 34.0 38.0 11.0 38.0 64-65 33.061024852262605 37.5 33.5 38.0 11.0 38.0 66-67 32.87177042014086 37.0 33.0 38.0 11.0 38.0 68-69 32.14241884562455 37.0 31.0 38.0 11.0 38.0 70-71 32.13147737391727 37.0 30.5 38.0 11.0 38.0 72-73 32.35733829838905 37.0 31.0 38.0 11.0 38.0 74-75 32.45054318788958 37.0 31.5 38.0 11.0 38.0 76 31.26311017566583 36.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 64.0 13 643.0 14 2167.0 15 3598.0 16 4882.0 17 5882.0 18 6427.0 19 6070.0 20 5088.0 21 4230.0 22 3734.0 23 3628.0 24 3638.0 25 3989.0 26 4521.0 27 5069.0 28 6108.0 29 7067.0 30 8593.0 31 10464.0 32 12869.0 33 16289.0 34 21473.0 35 29909.0 36 49230.0 37 83192.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.76362017323727 18.871529183194365 11.207641868372056 30.15720877519631 2 20.059580668663482 22.213227556059255 31.710191856229258 26.016999919048008 3 18.18861814943738 22.95410021857039 30.528292722415607 28.32898890957662 4 13.176394398121912 21.14466121589897 31.665506354731644 34.013438031247475 5 14.098923338460292 33.56528778434388 34.563263984457215 17.772524892738605 6 28.07983861305667 37.61798829750374 18.09968817089401 16.202484918545572 7 27.28994902948777 29.780833273964884 19.600655427679513 23.328562268867834 8 23.960067094534647 36.19478139227636 18.78517443931377 21.059977073875228 9 23.518229453407862 17.542893784044615 19.444210553587276 39.49466620896025 10-11 23.782053565357053 26.17002192222629 24.319423351542486 25.728501160874167 12-13 23.78308715791655 22.96190878638191 25.568891069199495 27.686112986502042 14-15 24.532945193613827 24.926859516843763 22.181602112533536 28.358593177008874 16-17 24.992026215536654 25.969604095529984 23.295593451944388 25.742776236988966 18-19 22.435276783834983 25.8632190793841 25.350776354775512 26.350727782005407 20-21 24.419655144499313 25.232089371002996 24.866186351493564 25.482069133004124 22-23 25.226345443947928 24.814778835567644 24.088303866329902 25.870571854154523 24-25 22.525318761384337 27.443837279902855 23.876138433515482 26.15470552519733 26-27 23.83675465111949 27.449012138001155 24.35225946211995 24.361973748759404 28-29 22.625871091422503 27.004805574985102 25.603773218310405 24.765550115281986 30-31 22.858114288952393 26.75598442470999 25.10276939018368 25.283131896153936 32-33 22.209989476240587 27.11292803367603 25.10661377802963 25.570468712053753 34-35 22.4864765093608 26.938016187711394 25.46609696112067 25.109410341807138 36-37 23.936780911203414 25.85003279166363 25.05849870857522 25.154687588557735 38-39 23.689911786422105 25.39281596911877 26.196582857290895 24.72068938716823 40-41 22.479992617142152 26.3710501305762 26.103907247991167 25.045050004290477 42-43 21.270760273684278 26.07593993970656 26.50239781363435 26.15090197297481 44-45 20.790102588015856 24.416789720473563 27.837685552187768 26.955422139322817 46-47 21.48537807180304 24.68047419669254 27.347263913579887 26.486883817924532 48-49 21.35303165223023 25.340079332955558 27.71699182384846 25.589897190965754 50-51 22.887567373279946 25.14017042262415 26.490955101750046 25.481307102345863 52-53 19.34355619605875 26.226986414495524 27.41972569911103 27.0097316903347 54-55 19.561788983843964 25.689359814249308 27.16296255517307 27.585888646733657 56-57 19.78959538321038 26.325351537958326 26.55706541099661 27.32798766783468 58-59 19.725375261104006 26.45772948815519 26.864970772544005 26.951924478196805 60-61 19.29733362482895 25.54197941717071 26.9994574942713 28.161229463729036 62-63 19.772440604471846 25.860553079111458 26.336105907250197 28.03090040916649 64-65 20.670580138455932 25.247075017205784 25.90097566900125 28.18136917533703 66-67 19.988146344070177 27.13240306964347 24.752765448212315 28.12668513807404 68-69 20.297969069761418 27.74735771831205 23.997163432893817 27.95750977903272 70-71 20.35988252170337 27.139817953973633 24.313927395304106 28.18637212901889 72-73 20.1716265664972 26.821184547132543 24.548265924030957 28.4589229623393 74-75 19.868877198266162 26.45076256215703 24.59613108394094 29.084229155635867 76 19.590566581502962 25.82856513728195 24.44586923647338 30.134999044741704 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 2.0 12 3.0 13 2.5 14 6.0 15 12.5 16 31.0 17 47.0 18 59.0 19 103.0 20 174.0 21 213.0 22 267.0 23 404.0 24 577.5 25 668.0 26 874.0 27 1186.5 28 1526.0 29 1759.0 30 2019.5 31 2652.0 32 3578.0 33 4132.0 34 4830.0 35 6091.0 36 7446.5 37 8239.0 38 9156.5 39 11238.5 40 13288.5 41 14881.0 42 15588.0 43 16199.5 44 17727.0 45 18816.0 46 18989.0 47 18969.0 48 18494.0 49 17563.5 50 17088.0 51 16316.0 52 14559.0 53 12603.5 54 11633.0 55 10961.5 56 9482.0 57 7879.5 58 7085.0 59 6587.0 60 5628.0 61 4795.5 62 4424.0 63 4165.5 64 3649.0 65 3151.0 66 2801.0 67 2691.0 68 2544.0 69 2208.0 70 1936.0 71 1853.0 72 1779.5 73 1619.0 74 1418.0 75 1304.0 76 1257.0 77 1112.0 78 935.0 79 856.0 80 763.5 81 624.0 82 511.0 83 445.0 84 390.0 85 283.0 86 190.5 87 150.0 88 136.5 89 110.0 90 81.0 91 54.0 92 43.0 93 40.0 94 26.5 95 14.0 96 12.0 97 11.5 98 7.0 99 10.5 100 18.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 6.47615963733506E-4 7 0.006152351655468308 8 0.002266655873067271 9 0.012628511292803367 10-11 0.001942847891200518 12-13 1.619039909333765E-4 14-15 4.857119728001295E-4 16-17 1.619039909333765E-4 18-19 0.00323807981866753 20-21 0.0 22-23 0.001619039909333765 24-25 0.004047599773334413 26-27 4.857119728001295E-4 28-29 0.005504735691734802 30-31 8.095199546668825E-4 32-33 0.0 34-35 0.003399983809600907 36-37 0.0186189589573383 38-39 0.009390431474135838 40-41 4.857119728001295E-4 42-43 6.47615963733506E-4 44-45 0.005504735691734802 46-47 0.002590463854934024 48-49 0.0 50-51 0.0014571359184003885 52-53 0.01295231927467012 54-55 0.007771391564802072 56-57 0.012628511292803367 58-59 0.01295231927467012 60-61 0.02347607868533959 62-63 0.008580911519468956 64-65 0.020237998866672064 66-67 0.019266574921071804 68-69 3.23807981866753E-4 70-71 6.47615963733506E-4 72-73 0.004857119728001295 74-75 0.009876143446935968 76 0.002590463854934024 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 308825.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.04743399440004 #Duplication Level Percentage of deduplicated Percentage of total 1 79.67983853989739 49.43929522488735 2 8.111868156983872 10.066412080834647 3 4.81618881256231 8.964964723560836 4 2.8277003670307588 7.018062075171271 5 1.553078490963026 4.818226757807539 6 0.85022489500515 3.1652563831936638 7 0.5089541233381589 2.2105508161801506 8 0.30611098526369757 1.519472092248803 9 0.22969098553317085 1.2826562637580299 >10 1.1087692634891737 11.218311388378146 >50 0.007575379933285875 0.2967921939796165 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009714239456002591 0.0 2 0.0 0.0 0.0 0.010038047437869343 0.0 3 0.0 0.0 0.0 0.010361855419736096 0.0 4 0.0 0.0 0.0 0.01748563102080466 0.0 5 0.0 0.0 0.0 0.020723710839472193 0.0 6 0.0 0.0 0.0 0.0213713268032057 0.0 7 0.0 0.0 0.0 0.0213713268032057 0.0 8 0.0 0.0 0.0 0.02234275074880596 0.0 9 0.0 0.0 0.0 0.024285598640006477 0.0 10 0.0 0.0 0.0 0.02460940662187323 0.0 11 0.0 0.0 0.0 0.02460940662187323 0.0 12 0.0 0.0 0.0 0.02460940662187323 0.0 13 0.0 0.0 0.0 0.025257022585606734 0.0 14 0.0 0.0 0.0 0.026552254513073748 0.0 15 0.0 0.0 0.0 0.027523678458674008 0.0 16 0.0 0.0 0.0 0.02817129442240751 0.0 17 0.0 0.0 0.0 0.028495102404274265 0.0 18 0.0 0.0 0.0 0.02914271836800777 0.0 19 0.0 0.0 0.0 0.03108556625920829 0.0 20 0.0 0.0 0.0 0.0323807981866753 0.0 21 0.0 0.0 0.0 0.03497126204160932 0.0 22 0.0 0.0 0.0 0.04241884562454464 0.0 23 0.0 0.0 0.0 0.043390269570144906 0.0 24 0.0 0.0 0.0 0.04662834938881243 0.0 25 0.0 0.0 0.0 0.048571197280012954 0.0 26 0.0 0.0 0.0 0.050837853153080224 0.0 27 0.0 0.0 0.0 0.09293289079575812 0.0 28 0.0 0.0 0.0 0.13114223265603497 0.0 29 0.0 0.0 0.0 0.17809439002671415 0.0 30 0.0 0.0 0.0 0.2253703553792601 0.0 31 0.0 0.0 0.0 0.2778272484416741 0.0 32 0.0 0.0 0.0 0.3348174532502226 0.0 33 0.0 0.0 0.0 0.4138266008257104 0.0 34 0.0 0.0 0.0 0.4941309803286651 0.0 35 0.0 0.0 0.0 0.6194446693110985 0.0 36 0.0 0.0 0.0 0.8580911519468954 0.0 37 0.0 0.0 0.0 1.304298550959281 0.0 38 0.0 0.0 0.0 1.813324698453817 0.0 39 0.0 0.0 0.0 2.427912248036914 0.0 40 0.0 0.0 0.0 3.1684611025661784 0.0 41 0.0 0.0 0.0 3.9559621144661214 0.0 42 0.0 0.0 0.0 4.8143770743948835 0.0 43 0.0 0.0 0.0 5.746620254189266 0.0 44 0.0 0.0 0.0 6.634825548449769 0.0 45 0.0 0.0 0.0 7.5518497530964135 0.0 46 0.0 0.0 0.0 8.499311908038534 0.0 47 0.0 0.0 0.0 9.458431150327856 0.0 48 0.0 0.0 0.0 10.29774143932648 0.0 49 0.0 0.0 0.0 11.129927952724035 0.0 50 0.0 0.0 0.0 11.891200518092772 0.0 51 0.0 0.0 0.0 12.775520116570874 0.0 52 0.0 0.0 0.0 13.639763620173238 0.0 53 0.0 0.0 0.0 14.437950295474783 0.0 54 0.0 0.0 0.0 15.296041447421679 0.0 55 0.0 0.0 0.0 16.03594268598721 0.0 56 0.0 0.0 0.0 16.770015380879137 0.0 57 0.0 0.0 0.0 17.458431150327854 0.0 58 0.0 0.0 0.0 18.149761191613372 0.0 59 0.0 0.0 0.0 18.747834534121267 0.0 60 0.0 0.0 0.0 19.40354569740144 0.0 61 0.0 0.0 0.0 20.01003804743787 0.0 62 0.0 0.0 0.0 20.64502549987857 0.0 63 0.0 0.0 0.0 21.282279608192344 0.0 64 0.0 0.0 0.0 21.833400793329556 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGCTCG 15 0.0022194628 70.03095 58 TTGTACG 30 8.367819E-6 58.330765 9 TAATCCG 20 0.006948452 52.497692 5 CGACGAG 60 8.367351E-11 52.48069 22 CGCGTTA 20 0.0069573605 52.48069 10 CCGTGTA 30 5.8598974E-4 46.6873 34 TTCGGTA 30 5.8833475E-4 46.6495 26 TTCCGAC 45 1.6860267E-6 46.649498 19 TCGGTGG 125 0.0 44.798027 45 CGGTGGT 125 0.0 44.790775 46 TGTCGTC 40 4.5969347E-5 43.73391 18 GTAGATC 225 0.0 43.5607 38 CTCGGTG 130 0.0 43.08201 44 ACGTGTA 50 3.4620443E-6 42.018574 34 TAGATCT 255 0.0 41.181328 39 TCTCGGT 145 0.0 41.039326 43 CGGACGT 60 2.5957706E-7 40.82492 46 GATCTCG 245 0.0 40.004723 41 TCGGTAA 35 0.001256614 39.985287 27 GCGTTAT 35 0.0012576152 39.978813 11 >>END_MODULE