SRR1779821_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779821_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	308825
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	27158	8.793977171537279	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	3217	1.0416902776653445	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	1812	0.5867400631425564	No Hit
ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT	696	0.2253703553792601	RNA PCR Primer, Index 15 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	670	0.2169513478507245	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT	336	0.10879948190722902	No Hit
CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	325	0.10523759410669474	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAAACTCGTATGCCGT	322	0.10426617016109448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGTA	15	0.0022260332	69.97879	41
TGGACCG	15	0.0022274635	69.96745	9
CATCTCG	25	2.3937835E-4	55.973965	36
TATGCCG	4385	0.0	53.222176	43
CCGTCTT	4375	0.0	53.155544	47
GCCGTCT	4395	0.0	52.993347	46
ATGCCGT	4395	0.0	52.93328	44
CTCGTAT	4350	0.0	52.926483	39
CGTCTTC	4370	0.0	52.89579	48
CGTATGC	4420	0.0	52.879898	41
TCGTATG	4420	0.0	52.800735	40
TGCCGTC	4405	0.0	52.705486	45
GTATGCC	4440	0.0	52.56289	42
CTTGAAA	4275	0.0	52.53169	57
TCTCGTA	4140	0.0	52.48409	38
TTCGGAG	20	0.00695558	52.484085	39
GCAACGT	20	0.0069600362	52.475586	10
GTCCGTA	20	0.0069600362	52.475586	11
ATCTCGT	4155	0.0	52.294617	37
AATCTCG	4075	0.0	52.282433	36