##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779821_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 308825 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.488807577106776 34.0 34.0 34.0 34.0 34.0 2 33.592348417388486 34.0 34.0 34.0 34.0 34.0 3 33.71858819719906 34.0 34.0 34.0 34.0 34.0 4 33.48417712296608 34.0 34.0 34.0 34.0 34.0 5 33.54938233627459 34.0 34.0 34.0 34.0 34.0 6 37.17603173318222 38.0 38.0 38.0 36.0 38.0 7 37.26716101351899 38.0 38.0 38.0 36.0 38.0 8 37.142410750425 38.0 38.0 38.0 36.0 38.0 9 37.056034971262044 38.0 38.0 38.0 36.0 38.0 10-11 36.98654254027362 38.0 37.5 38.0 35.0 38.0 12-13 37.1827394155266 38.0 38.0 38.0 36.0 38.0 14-15 37.206332065085405 38.0 38.0 38.0 36.0 38.0 16-17 37.12723872743463 38.0 38.0 38.0 36.0 38.0 18-19 36.98141989800049 38.0 37.5 38.0 35.5 38.0 20-21 36.99207641868372 38.0 37.5 38.0 35.5 38.0 22-23 36.96458350198333 38.0 37.5 38.0 35.5 38.0 24-25 37.19430421759896 38.0 38.0 38.0 36.0 38.0 26-27 37.086566825872254 38.0 38.0 38.0 36.0 38.0 28-29 36.53034242694082 38.0 37.0 38.0 34.0 38.0 30-31 36.8252910224237 38.0 37.0 38.0 35.0 38.0 32-33 36.89219946571683 38.0 37.0 38.0 35.5 38.0 34-35 37.01955800210475 38.0 38.0 38.0 36.0 38.0 36-37 36.965563021128474 38.0 37.5 38.0 35.5 38.0 38-39 36.50884481502469 38.0 37.0 38.0 34.0 38.0 40-41 36.76347122156561 38.0 37.0 38.0 34.5 38.0 42-43 37.083315793734315 38.0 38.0 38.0 36.0 38.0 44-45 36.821112280417715 38.0 37.0 38.0 35.0 38.0 46-47 36.981113899457625 38.0 38.0 38.0 36.0 38.0 48-49 36.58653606411398 38.0 37.0 38.0 34.0 38.0 50-51 36.794514692787175 38.0 37.0 38.0 34.5 38.0 52-53 36.704543025985586 38.0 37.0 38.0 34.5 38.0 54-55 36.71854610216141 38.0 37.0 38.0 34.5 38.0 56-57 36.57958228770339 38.0 37.0 38.0 34.0 38.0 58-59 36.691048328341296 38.0 37.0 38.0 34.5 38.0 60-61 36.341185137213635 38.0 37.0 38.0 34.0 38.0 62-63 36.13736744110743 38.0 37.0 38.0 34.0 38.0 64-65 36.52563425888448 38.0 37.0 38.0 34.0 38.0 66-67 36.28906986157209 38.0 37.0 38.0 33.0 38.0 68-69 36.41360317331822 38.0 37.0 38.0 34.0 38.0 70-71 35.71589573382984 38.0 37.0 38.0 30.5 38.0 72-73 34.525618068485386 38.0 36.5 38.0 23.0 38.0 74-75 34.34122399417146 38.0 36.5 38.0 22.5 38.0 76 34.07560268760625 38.0 35.0 38.0 22.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 0.0 21 2.0 22 15.0 23 42.0 24 81.0 25 153.0 26 323.0 27 581.0 28 1076.0 29 1736.0 30 2914.0 31 4600.0 32 7277.0 33 11454.0 34 19005.0 35 36128.0 36 52658.0 37 170778.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.67769441096813 16.946895774209853 11.236377301766254 34.13903251305576 2 19.2549178337246 17.282927224156076 38.82781510564236 24.63433983647697 3 17.802639035052216 19.447907390917184 35.96761920181332 26.781834372217272 4 13.025823686553872 23.926819396098114 33.90366712539464 29.14368979195337 5 13.043633125556545 31.663887314822308 41.09641382660082 14.196065733020319 6 27.674572978223917 42.5117785153404 16.338703149032625 13.47494535740306 7 26.65360641139804 27.040880757710678 19.39966000161904 26.90585282927224 8 23.552821177042013 40.282684368169676 16.806281874848214 19.358212579940094 9 22.117704201408564 16.111389945762163 17.942200275236786 43.82870557759249 10-11 23.164575406783776 27.516716587063872 27.756982109609 21.56172589654335 12-13 22.941957419250382 20.43892171942038 28.26325588925767 28.355864972071558 14-15 20.916052780701044 20.873957743058366 21.049299765239212 37.160689711001375 16-17 26.852748320246096 28.40233141746944 21.70080142475512 23.044118837529346 18-19 26.6388731482231 24.30777948676435 22.75706306160447 26.29628430340808 20-21 20.89613858981624 23.124747025014166 22.55565449688335 33.423459888286246 22-23 21.303489031004613 28.646644539787907 22.44458835910305 27.60527807010443 24-25 26.524017071322636 28.540227056362568 22.53871162028612 22.397044252028678 26-27 26.348579292479556 29.353355460212093 22.911681372945843 21.3863838743625 28-29 20.85161499230956 29.280822472273943 23.544725977495347 26.322836557921153 30-31 20.73374888691006 29.017728487007204 28.973204889500526 21.275317736582206 32-33 25.43981219137052 30.14668501578564 23.4974500121428 20.916052780701044 34-35 21.955638306484254 23.35416498016676 33.920019428478916 20.770177284870073 36-37 20.679834857929247 33.15259451145471 24.956852586416257 21.21071804419979 38-39 20.401198089532908 24.532340322188944 28.709139480288187 26.357322107989962 40-41 20.327855581640087 21.821257994009553 30.22585606735206 27.6250303569983 42-43 25.765891789147826 21.817027876809693 29.668774670280385 22.74830566376209 44-45 20.093094794786694 27.14352788796244 30.88950052618797 21.873876791062898 46-47 25.04249979762001 21.71990609568526 26.146037399821903 27.091556706872826 48-49 24.174046790253378 21.545211689468147 25.78094390026714 28.499797620011336 50-51 19.74661120008291 21.91162158792258 30.995111319101802 27.346655892892706 52-53 17.979227703305657 22.15295963929472 36.61501934547669 23.252793311922936 54-55 17.55134240255554 22.14291962431519 32.07527303240103 28.23046494072824 56-57 23.032538459918587 22.12832337919204 26.324451550302836 28.514686610586544 58-59 18.303264124753607 22.361837938870345 35.334923851126234 23.99997408524981 60-61 23.43358010375047 27.315233956818684 25.668118352625264 23.583067586805583 62-63 17.81459527742688 34.32044180999579 23.55294270074175 24.312020211835584 64-65 17.896642517318547 35.161753132560165 22.717983761533553 24.223620588587732 66-67 17.835988785391855 35.18818157817589 22.01166487692923 24.964164759503017 68-69 18.021855959222073 35.549532132210906 21.705859398402495 24.72275251016453 70-71 18.298330553621454 34.94956037372282 21.51853231212656 25.233576760529168 72-73 18.586570149229562 32.63908794260775 21.918203091472943 26.856138816689747 74-75 18.874655292744105 32.25601689247725 22.035355669877728 26.833972144900926 76 18.91408752198089 32.4747159081709 22.32318947119573 26.28800709865249 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.5 7 2.5 8 2.0 9 1.5 10 0.5 11 0.0 12 0.0 13 5.0 14 14.5 15 14.0 16 23.0 17 37.0 18 41.0 19 68.0 20 167.0 21 243.0 22 266.5 23 384.5 24 585.5 25 692.0 26 889.0 27 1214.0 28 1566.0 29 1790.0 30 2150.5 31 2719.0 32 3417.5 33 3908.0 34 4718.0 35 5961.5 36 11343.0 37 16291.0 38 18954.0 39 21302.0 40 19736.5 41 17573.5 42 16661.0 43 16157.0 44 16071.0 45 16502.5 46 16516.0 47 16599.0 48 15954.0 49 14820.5 50 14415.0 51 13767.5 52 11923.5 53 10222.5 54 9718.0 55 8888.5 56 7432.5 57 6124.5 58 5443.0 59 5015.5 60 4298.0 61 3788.0 62 3568.0 63 3308.0 64 2952.0 65 2730.5 66 2628.5 67 2652.0 68 2393.5 69 2060.5 70 1896.5 71 1807.0 72 1652.5 73 1433.5 74 1283.0 75 1197.0 76 1155.0 77 1038.0 78 895.0 79 827.0 80 775.5 81 596.5 82 411.0 83 353.0 84 303.5 85 204.5 86 165.5 87 176.0 88 118.5 89 57.5 90 40.5 91 19.5 92 12.0 93 9.5 94 8.0 95 4.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0482473892981462 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 9.71423945600259E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 6.47615963733506E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.016352303084271026 52-53 0.031247470250141667 54-55 0.052456893062413995 56-57 0.051647373107747106 58-59 0.03901886181494374 60-61 0.033514126123208934 62-63 0.030761758277341535 64-65 0.016838015057071155 66-67 0.03901886181494374 68-69 0.009876143446935968 70-71 0.01295231927467012 72-73 0.02347607868533959 74-75 0.015704687120537523 76 0.011009471383469603 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 308825.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.627297012871367 #Duplication Level Percentage of deduplicated Percentage of total 1 37.77872188797676 8.926090828138914 2 13.962476187865747 6.5979114385169595 3 12.779749749886934 9.058528292722416 4 10.514342099853359 9.937019347526917 5 7.61577151314978 8.997004776167733 6 5.237984294270012 7.42556464016838 7 3.23845025833596 5.3561078280579615 8 1.995422588293338 3.7717153727839388 9 1.2909945591842888 2.7452440702663323 >10 5.385996409335727 22.65975876305351 >50 0.16719887072238135 2.6451874038695053 >100 0.026039168391190536 1.0151380231522706 >500 0.00274096509380953 0.4423217032299846 >1k 0.00274096509380953 1.6284303408079008 >5k 0.0 0.0 >10k+ 0.001370482546904765 8.793977171537279 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT 27158 8.793977171537279 No Hit TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 3217 1.0416902776653445 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 1812 0.5867400631425564 No Hit ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT 696 0.2253703553792601 RNA PCR Primer, Index 15 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 670 0.2169513478507245 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT 336 0.10879948190722902 No Hit CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 325 0.10523759410669474 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAAACTCGTATGCCGT 322 0.10426617016109448 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.017161823038937908 0.0 2 0.0 0.0 0.0 0.017809439002671415 0.0 3 0.0 0.0 0.0 0.01813324698453817 0.0 4 0.0 0.0 0.0 0.027847486440540758 0.0 5 0.0 0.0 0.0 0.032056990204808546 0.0 6 0.0 0.0 0.0 0.03270460616854205 0.0 7 0.0 0.0 0.0 0.03270460616854205 0.0 8 0.0 0.0 0.0 0.033676030114142316 0.0 9 0.0 0.0 0.0 0.036914109932809844 0.0 10 0.0 0.0 0.0 0.03756172589654335 0.0 11 0.0 0.0 9.71423945600259E-4 0.03756172589654335 0.0 12 0.0 0.0 9.71423945600259E-4 0.03756172589654335 0.0 13 0.0 0.0 9.71423945600259E-4 0.03820934186027686 0.0 14 0.0 0.0 9.71423945600259E-4 0.03820934186027686 0.0 15 0.0 0.0 9.71423945600259E-4 0.03982838176961062 0.0 16 0.0 0.0 9.71423945600259E-4 0.04079980571521088 0.0 17 0.0 0.0 9.71423945600259E-4 0.041447421678944385 0.0 18 0.0 0.0 9.71423945600259E-4 0.04241884562454464 0.0 19 0.0 0.0 9.71423945600259E-4 0.04436169351574516 0.0 20 0.0 0.0 9.71423945600259E-4 0.045980733425078926 0.0 21 0.0 0.0 9.71423945600259E-4 0.05019023718934672 0.0 22 0.0 0.0 9.71423945600259E-4 0.051161661134946974 0.0 23 0.0 0.0 9.71423945600259E-4 0.053752124989881 0.0 24 0.0 0.0 9.71423945600259E-4 0.05666639682668178 0.0 25 0.0 0.0 9.71423945600259E-4 0.060552092609082814 0.0 26 0.0 0.0 9.71423945600259E-4 0.062494940500283334 0.0 27 0.0 0.0 9.71423945600259E-4 0.10944709787096252 0.0 28 0.0 0.0 9.71423945600259E-4 0.1515421355136404 0.0 29 0.0 0.0 9.71423945600259E-4 0.20302760463045413 0.0 30 0.0 0.0 9.71423945600259E-4 0.2535416498016676 0.0 31 0.0 0.0 9.71423945600259E-4 0.3127985104832834 0.0 32 0.0 0.0 9.71423945600259E-4 0.37173156318303247 0.0 33 0.0 0.0 9.71423945600259E-4 0.4585121023233223 0.0 34 0.0 0.0 9.71423945600259E-4 0.5524164170646807 0.0 35 0.0 0.0 9.71423945600259E-4 0.6997490488140533 0.0 36 0.0 0.0 9.71423945600259E-4 0.967538249817858 0.0 37 0.0 0.0 9.71423945600259E-4 1.4613454221646565 0.0 38 0.0 0.0 9.71423945600259E-4 2.0092285274832022 0.0 39 0.0 0.0 9.71423945600259E-4 2.6571682991985752 0.0 40 0.0 0.0 9.71423945600259E-4 3.4751072613939935 0.0 41 0.0 0.0 9.71423945600259E-4 4.32413178984862 0.0 42 0.0 0.0 9.71423945600259E-4 5.265117785153404 0.0 43 0.0 0.0 9.71423945600259E-4 6.269570144904072 0.0 44 0.0 0.0 9.71423945600259E-4 7.220917995628592 0.0 45 0.0 0.0 9.71423945600259E-4 8.206913300412856 0.0 46 0.0 0.0 9.71423945600259E-4 9.249898810005666 0.0 47 0.0 0.0 9.71423945600259E-4 10.281227232251275 0.0 48 0.0 0.0 9.71423945600259E-4 11.196632396988585 0.0 49 0.0 0.0 9.71423945600259E-4 12.106856634016028 0.0 50 0.0 0.0 9.71423945600259E-4 12.924795596211446 0.0 51 0.0 0.0 9.71423945600259E-4 13.866105399498098 0.0 52 0.0 0.0 9.71423945600259E-4 14.762729701287137 0.0 53 0.0 0.0 9.71423945600259E-4 15.581640087428156 0.0 54 0.0 0.0 9.71423945600259E-4 16.466607301869992 0.0 55 0.0 0.0 9.71423945600259E-4 17.222051323565125 0.0 56 0.0 0.0 9.71423945600259E-4 17.979762001133327 0.0 57 0.0 0.0 9.71423945600259E-4 18.703149032623653 0.0 58 0.0 0.0 9.71423945600259E-4 19.40581235327451 0.0 59 0.0 0.0 9.71423945600259E-4 20.029466526349875 0.0 60 0.0 0.0 9.71423945600259E-4 20.706549016433254 0.0 61 0.0 0.0 9.71423945600259E-4 21.341536468873958 0.0 62 0.0 0.0 9.71423945600259E-4 22.008904719501334 0.0 63 0.0 0.0 9.71423945600259E-4 22.679511049947383 0.0 64 0.0 0.0 9.71423945600259E-4 23.271755848781673 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACGTA 15 0.0022260332 69.97879 41 TGGACCG 15 0.0022274635 69.96745 9 CATCTCG 25 2.3937835E-4 55.973965 36 TATGCCG 4385 0.0 53.222176 43 CCGTCTT 4375 0.0 53.155544 47 GCCGTCT 4395 0.0 52.993347 46 ATGCCGT 4395 0.0 52.93328 44 CTCGTAT 4350 0.0 52.926483 39 CGTCTTC 4370 0.0 52.89579 48 CGTATGC 4420 0.0 52.879898 41 TCGTATG 4420 0.0 52.800735 40 TGCCGTC 4405 0.0 52.705486 45 GTATGCC 4440 0.0 52.56289 42 CTTGAAA 4275 0.0 52.53169 57 TCTCGTA 4140 0.0 52.48409 38 TTCGGAG 20 0.00695558 52.484085 39 GCAACGT 20 0.0069600362 52.475586 10 GTCCGTA 20 0.0069600362 52.475586 11 ATCTCGT 4155 0.0 52.294617 37 AATCTCG 4075 0.0 52.282433 36 >>END_MODULE