##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779820_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 199726 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.019521744790364 33.0 23.0 34.0 12.0 34.0 2 28.89344401830508 34.0 23.0 34.0 12.0 34.0 3 28.466238747083505 34.0 23.0 34.0 11.0 34.0 4 28.735442556302132 34.0 23.0 34.0 12.0 34.0 5 29.22646525740264 34.0 27.0 34.0 11.0 34.0 6 31.58844116439522 37.0 27.0 38.0 12.0 38.0 7 31.883991067762835 37.0 28.0 38.0 12.0 38.0 8 31.120920661305988 37.0 27.0 38.0 11.0 38.0 9 32.070937183942 37.0 31.0 38.0 12.0 38.0 10-11 30.621676697074996 36.5 25.5 38.0 11.0 38.0 12-13 31.438315492224348 37.0 27.0 38.0 11.0 38.0 14-15 30.228923625366754 36.0 24.5 38.0 11.0 38.0 16-17 30.85482360834343 36.5 25.5 38.0 11.0 38.0 18-19 31.737442796631385 37.0 28.0 38.0 11.0 38.0 20-21 30.45470794989135 36.0 24.5 38.0 11.0 38.0 22-23 31.347506083334167 37.0 28.5 38.0 11.0 38.0 24-25 31.670333356698677 37.0 29.0 38.0 11.0 38.0 26-27 30.562463074411944 37.0 24.5 38.0 11.0 38.0 28-29 31.720617245626507 37.0 29.0 38.0 11.0 38.0 30-31 32.19065619899262 37.5 31.0 38.0 11.0 38.0 32-33 32.30209386859998 38.0 31.0 38.0 11.0 38.0 34-35 32.20804251825 37.0 31.0 38.0 11.0 38.0 36-37 31.664405235172186 37.0 29.0 38.0 11.0 38.0 38-39 31.60618046724012 37.0 28.5 38.0 11.0 38.0 40-41 31.55669767581587 37.0 27.0 38.0 11.0 38.0 42-43 32.009445440253145 37.0 29.0 38.0 11.0 38.0 44-45 32.08540450417071 37.0 31.0 38.0 11.0 38.0 46-47 31.967117450907743 37.0 29.0 38.0 11.0 38.0 48-49 31.610040755835495 37.0 28.5 38.0 11.0 38.0 50-51 30.941357159308254 37.0 25.5 38.0 11.0 38.0 52-53 31.540432893063496 37.0 27.0 38.0 11.0 38.0 54-55 31.710891421247105 37.0 29.0 38.0 11.0 38.0 56-57 31.792913791894897 37.0 29.0 38.0 11.0 38.0 58-59 32.08833852377757 37.0 31.0 38.0 11.0 38.0 60-61 31.93695863332766 37.0 29.5 38.0 11.0 38.0 62-63 31.940911548821887 37.0 31.0 38.0 11.0 38.0 64-65 31.949280514304597 37.0 29.0 38.0 11.0 38.0 66-67 31.816889138119222 37.0 27.5 38.0 11.0 38.0 68-69 31.139238256411282 37.0 26.0 38.0 11.0 38.0 70-71 31.154038532789922 37.0 26.0 38.0 11.0 38.0 72-73 31.33667123959825 37.0 27.0 38.0 11.0 38.0 74-75 31.398065349528856 37.0 27.0 38.0 11.0 38.0 76 30.245987002193004 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 41.0 13 491.0 14 1838.0 15 3387.0 16 4643.0 17 5715.0 18 6063.0 19 5573.0 20 4591.0 21 3684.0 22 3015.0 23 2588.0 24 2527.0 25 2592.0 26 2840.0 27 3294.0 28 3894.0 29 4530.0 30 5019.0 31 6248.0 32 7874.0 33 9885.0 34 12856.0 35 18135.0 36 29761.0 37 48640.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.112343911158284 18.944453901845527 9.90907543334368 34.03412675365251 2 19.514735187206472 20.845558415028588 33.53093738421637 26.10876901354856 3 17.027828124530604 20.848061844727276 34.44569059611668 27.678419434625432 4 12.425022280524319 24.962198211549826 30.806705186104967 31.806074321820894 5 15.678479516938204 33.418283047775454 33.55847511090194 17.34476232438441 6 26.05735000325454 37.88885495265896 16.439433009047622 19.61436203503888 7 25.518128877516787 31.136303321332537 18.90100095639155 24.444566844759123 8 22.469569745492418 39.62166844416405 16.794095704464773 21.11466610587876 9 22.695976565434016 18.5283292856964 18.65351393305125 40.12218021581833 10-11 22.41160035650267 27.769404860853804 23.90345386995664 25.91554091268689 12-13 22.29134487083522 23.164042648535112 26.016958275232753 28.527654205396907 14-15 24.741646055095483 25.512201716351402 21.961337031733475 27.784815196819647 16-17 25.252285022618658 26.143763033578754 22.464945462374423 26.13900648142817 18-19 21.62296809791684 26.0932152683375 25.308869144629618 26.97494748911604 20-21 24.3621261127745 24.915133733214503 24.464516387450807 26.258223766560185 22-23 25.046001787498028 25.169674620281846 23.401954231037873 26.38236936118225 24-25 21.496506332663223 28.5106287099092 23.08924811672429 26.903616840703286 26-27 23.447357353147343 28.443251687328512 23.71322424946426 24.396166710059884 28-29 21.89761833826957 27.66362814732104 25.438941283388456 24.999812231020936 30-31 22.632870196520216 26.887219927400174 25.412692452121664 25.067217423957942 32-33 21.04658381983317 27.95179395772208 25.220051470514605 25.781570751930143 34-35 21.433560568697597 28.589596909665804 25.219620517776182 24.757222003860413 36-37 23.743552506384898 25.812509389553806 25.328008413040216 25.115929691021083 38-39 23.88766346108105 25.34257036055953 26.426927920642353 24.342838257717066 40-41 21.76968331455752 27.191638502941544 25.636500187758166 25.402177994742768 42-43 20.242783219969407 26.452806476889528 26.79252273745716 26.5118875656839 44-45 19.765316749784695 24.47650663942799 28.472681207314388 27.285495403472932 46-47 20.686210694972964 24.758161425996395 27.908822351291807 26.64680552773883 48-49 20.72188898791344 25.59281215264913 27.575528474009392 26.10977038542804 50-51 23.212341061517545 25.707540674983164 25.770878239165647 25.30924002433364 52-53 18.247780431745458 27.37692850811964 26.810581819820634 27.564709240314272 54-55 19.031989124148446 25.731754031500913 26.642581562627534 28.59367528172311 56-57 19.368310361662974 26.424306155406168 26.02020505501934 28.18717842791152 58-59 18.97617962674572 26.650325733714563 26.38518199526296 27.988312644276753 60-61 18.349225745708047 25.820078527214086 26.826458863358642 29.004236863719225 62-63 19.18980496231942 26.125284795072734 26.089982724518666 28.59492751808918 64-65 19.935097941513032 25.548925685640672 25.26172406108606 29.254252311760244 66-67 19.22491411860146 28.05918054623574 23.49745110018328 29.218454234979518 68-69 19.366079944724135 29.08316664622194 23.038370163048786 28.51238324600514 70-71 19.259433572578363 28.371690144723633 23.487486575324635 28.881389707373366 72-73 19.471253145067408 28.06914767108541 23.643897004518884 28.8157021793283 74-75 18.834683597544487 27.361627126791312 24.04313167829997 29.76055759736423 76 18.273900722003585 26.44225473408037 23.19974764923243 32.08409689468361 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 2.5 12 4.0 13 4.5 14 4.0 15 4.5 16 12.0 17 18.0 18 34.0 19 60.0 20 98.0 21 126.0 22 124.0 23 192.0 24 329.0 25 396.0 26 533.5 27 712.5 28 896.0 29 1038.0 30 1225.0 31 1638.0 32 2278.5 33 2693.0 34 2999.0 35 3753.0 36 4734.0 37 5267.0 38 5975.0 39 7430.5 40 8656.0 41 9744.5 42 10355.0 43 10760.5 44 11563.5 45 12197.0 46 12433.0 47 12573.5 48 12420.0 49 11882.5 50 11639.0 51 11124.5 52 9838.0 53 8468.0 54 7870.0 55 7359.5 56 6305.5 57 5217.5 58 4673.0 59 4323.0 60 3624.5 61 2980.0 62 2684.0 63 2482.5 64 2133.5 65 1855.5 66 1617.0 67 1509.0 68 1374.5 69 1179.0 70 1055.0 71 992.0 72 929.0 73 856.5 74 763.0 75 679.0 76 633.5 77 546.0 78 470.5 79 437.0 80 387.0 81 324.0 82 262.5 83 214.0 84 195.5 85 153.5 86 118.0 87 106.0 88 85.5 89 62.0 90 47.5 91 29.5 92 23.0 93 20.0 94 15.5 95 15.0 96 16.0 97 12.0 98 11.5 99 10.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0025034296986872016 7 0.008511660975536486 8 0.003504801578162082 9 0.010514404734486248 10-11 0.004005487517899522 12-13 2.5034296986872014E-4 14-15 0.0 16-17 7.510289096061604E-4 18-19 0.0027537726685559214 20-21 0.0 22-23 0.0027537726685559214 24-25 0.0037551445480308024 26-27 0.0010013718794748805 28-29 0.006258574246718003 30-31 5.006859397374403E-4 32-33 0.0 34-35 0.0032544586082933623 36-37 0.01802469383054785 38-39 0.011265433644092406 40-41 5.006859397374403E-4 42-43 2.5034296986872014E-4 44-45 0.005006859397374403 46-47 0.0030041156384246416 48-49 0.0 50-51 0.0012517148493436008 52-53 0.012517148493436006 54-55 0.008762003945405205 56-57 0.011766119583829848 58-59 0.011515776613961127 60-61 0.025034296986872012 62-63 0.010514404734486248 64-65 0.020277780559366333 66-67 0.01602195007159809 68-69 2.5034296986872014E-4 70-71 2.5034296986872014E-4 72-73 0.004255830487768243 74-75 0.006008231276849283 76 0.002002743758949761 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 199726.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.47892208519913 #Duplication Level Percentage of deduplicated Percentage of total 1 77.09155441725811 48.16597221862759 2 9.887733228481082 12.355498279630082 3 5.468811655211442 10.250563719137537 4 3.1060144464899584 7.762417383909962 5 1.6030122336629364 5.007723822432381 6 0.8647160874337074 3.2415917431553307 7 0.5171252441899709 2.261659948802434 8 0.37071669778911365 1.8529583741478677 9 0.25108385313930154 1.4118703647427802 >10 0.8372551510152348 7.617484996693356 >50 0.0019769853291427796 0.07225914872070968 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.006859397374403E-4 0.0 2 0.0 0.0 0.0 5.006859397374403E-4 0.0 3 0.0 0.0 0.0 5.006859397374403E-4 0.0 4 0.0 0.0 0.0 0.0030041156384246416 0.0 5 0.0 0.0 0.0 0.007009603156324164 0.0 6 0.0 0.0 0.0 0.007009603156324164 0.0 7 0.0 0.0 0.0 0.007009603156324164 0.0 8 0.0 0.0 0.0 0.007009603156324164 0.0 9 0.0 0.0 0.0 0.008511660975536486 0.0 10 0.0 0.0 0.0 0.009513032855011365 0.0 11 0.0 0.0 0.0 0.009513032855011365 0.0 12 0.0 0.0 0.0 0.011015090674223687 0.0 13 0.0 0.0 0.0 0.011515776613961127 0.0 14 0.0 0.0 0.0 0.011515776613961127 0.0 15 0.0 0.0 0.0 0.012517148493436008 0.0 16 0.0 0.0 0.0 0.012517148493436008 0.0 17 0.0 0.0 0.0 0.014019206312648328 0.0 18 0.0 0.0 0.0 0.014019206312648328 0.0 19 0.0 0.0 0.0 0.014019206312648328 0.0 20 0.0 0.0 0.0 0.01652263601133553 0.0 21 0.0 0.0 0.0 0.01752400789081041 0.0 22 0.0 0.0 0.0 0.026536354806084336 0.0 23 0.0 0.0 0.0 0.031042528263721298 0.0 24 0.0 0.0 0.0 0.037050759540570584 0.0 25 0.0 0.0 0.0 0.039554189239257784 0.0 26 0.0 0.0 0.0 0.04355967675715731 0.0 27 0.0 0.0 0.0 0.07310014720166629 0.0 28 0.0 0.0 0.0 0.1081481629832871 0.0 29 0.0 0.0 0.0 0.1426954928251705 0.0 30 0.0 0.0 0.0 0.1727366492094169 0.0 31 0.0 0.0 0.0 0.22430730100237325 0.0 32 0.0 0.0 0.0 0.2773800106145419 0.0 33 0.0 0.0 0.0 0.3314540921061855 0.0 34 0.0 0.0 0.0 0.3970439502117902 0.0 35 0.0 0.0 0.0 0.5081962288335019 0.0 36 0.0 0.0 0.0 0.704965803150316 0.0 37 0.0 0.0 0.0 1.0334157796180767 0.0 38 0.0 0.0 0.0 1.4840331253817731 0.0 39 0.0 0.0 0.0 2.0432993200684937 0.0 40 0.0 0.0 0.0 2.749767181038022 0.0 41 0.0 0.0 0.0 3.6940608633828345 0.0 42 0.0 0.0 0.0 4.708951263230626 0.0 43 0.0 0.0 0.0 5.667264151888086 0.0 44 0.0 0.0 0.0 6.592031082583139 0.0 45 0.0 0.0 0.0 7.453210898931536 0.0 46 0.0 0.0 0.0 8.339425012266805 0.0 47 0.0 0.0 0.0 9.091955979692179 0.0 48 0.0 0.0 0.0 9.901064458307882 0.0 49 0.0 0.0 0.0 10.65459679761273 0.0 50 0.0 0.0 0.0 11.402120905640729 0.0 51 0.0 0.0 0.0 12.224747904629343 0.0 52 0.0 0.0 0.0 13.116469563301724 0.0 53 0.0 0.0 0.0 14.130859277209778 0.0 54 0.0 0.0 0.0 15.080159818951964 0.0 55 0.0 0.0 0.0 15.907292991398215 0.0 56 0.0 0.0 0.0 16.584220381923235 0.0 57 0.0 0.0 0.0 17.294693730410664 0.0 58 0.0 0.0 0.0 17.980633467850957 0.0 59 0.0 0.0 0.0 18.627019016051992 0.0 60 0.0 0.0 0.0 19.26889839079539 0.0 61 0.0 0.0 0.0 19.841683105855022 0.0 62 0.0 0.0 0.0 20.469543274285773 0.0 63 0.0 0.0 0.0 21.03481770024934 0.0 64 0.0 0.0 0.0 21.65116209206613 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAATGCG 20 7.9152735E-5 69.99525 5 TGACCGT 25 2.387041E-4 55.996197 39 TCTCGGT 125 0.0 55.996197 43 CTCGGTG 120 0.0 55.4129 44 CGGTGGT 110 0.0 54.087234 46 GCCGTAT 65 3.6379788E-12 53.85598 54 AGCGTAG 20 0.0069455365 52.496433 35 AGCGTAA 20 0.0069455365 52.496433 35 AAGCGTA 20 0.0069455365 52.496433 34 TAGCACG 20 0.0069455365 52.496433 5 GTTACGC 20 0.0069455365 52.496433 9 GACGCTT 20 0.0069455365 52.496433 14 CTTACGC 60 8.367351E-11 52.49643 12 TTACGCT 50 6.170376E-8 48.99667 13 ATCTCGG 160 0.0 48.12173 42 GTAGATC 190 0.0 47.89148 38 TGGTCGC 95 0.0 47.89148 49 TCGGTGG 140 0.0 47.496773 45 GGCGGTC 30 5.869643E-4 46.663494 47 CATACGA 30 5.869643E-4 46.663494 9 >>END_MODULE