SRR1779820_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779820_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	199726
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	25882	12.95875349228443	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	3374	1.6893143606741237	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1839	0.9207614431771528	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	649	0.32494517488959873	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	639	0.31993831549222435	Illumina PCR Primer Index 9 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT	506	0.2533470855071448	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT	465	0.23281896197790974	No Hit
CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	268	0.13418383184963398	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATATCGTATGCCGT	215	0.10764747704354967	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAGCTCGTATGCCGT	215	0.10764747704354967	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCGTA	15	0.0022245084	69.98173	24
GCTTGAC	35	2.9380863E-7	60.07458	56
TACATCG	25	2.3893207E-4	55.985374	39
CATCGCG	25	2.3893207E-4	55.985374	41
ATCTCGT	3535	0.0	53.15443	37
TCTCGTA	3550	0.0	53.126972	38
GATCTCG	3545	0.0	53.00449	36
AGATCTC	3565	0.0	52.805283	35
CTCGTAT	3765	0.0	52.788338	39
GGTCGAG	20	0.006930215	52.525745	45
CTCCGTA	20	0.0069508455	52.486294	22
CATGCTG	20	0.0069508455	52.486294	41
TGGACTA	20	0.0069508455	52.486294	5
CGGCCGT	20	0.0069508455	52.486294	13
CGGGCAA	20	0.0069508455	52.486294	33
AATGTAC	20	0.0069508455	52.486294	26
TCTATAG	20	0.0069508455	52.486294	32
TCACGTG	20	0.0069508455	52.486294	15
CGTATGC	3830	0.0	52.349255	41
TCGTATG	3825	0.0	52.326202	40