FastQCFastQC Report
Wed 25 May 2016
SRR1779819_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779819_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47106
Sequences flagged as poor quality0
Sequence length76
%GC50

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTAGAT150.002211644370.0000137
GCTGCAA150.002211644370.0000160
AGTTGTA150.002211644370.0000134
CTCGGGG150.002211644370.0000144
TCGTCAT150.002211644370.000018
GAAGTCG150.002211644370.0000114
TGTAGTC150.002211644370.0000118
ATCGGTG150.002211644370.0000144
ATGCATA150.002211644370.0000128
CTGATGC150.002211644370.0000112
CTTACTG150.002211644370.0000142
CGGCCAT207.8500656E-570.02
CCGGATC207.8500656E-570.055
CTTAGGT207.8500656E-570.031
ATCTCGG800.065.62542
GATCTCG750.065.33333641
TCTCGGT750.060.66666843
GCCCCTA308.256509E-658.33333668
ATATGTA308.256509E-658.33333626
ATGCAGT308.256509E-658.33333629
Produced by FastQC (version 0.11.5)