##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779819_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 47106 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.46363520570628 23.0 12.0 32.0 12.0 34.0 2 21.832696471787035 23.0 12.0 32.0 12.0 34.0 3 21.444953933681486 23.0 11.0 32.0 11.0 34.0 4 21.77402029465461 23.0 12.0 32.0 12.0 34.0 5 21.017407548932194 21.0 11.0 32.0 11.0 34.0 6 23.816074385428607 26.0 12.0 34.0 11.0 38.0 7 23.803549441684712 25.0 12.0 34.0 11.0 38.0 8 23.31131915254957 24.0 11.0 34.0 11.0 38.0 9 24.18551776843714 26.0 11.0 36.0 11.0 38.0 10-11 23.223124442746148 24.0 11.5 34.0 11.0 38.0 12-13 23.267004203286206 24.0 11.0 34.0 11.0 38.0 14-15 22.62406062921921 23.0 11.0 34.0 11.0 37.5 16-17 22.67559334267397 22.5 11.0 33.5 11.0 38.0 18-19 22.53095147115017 22.0 11.0 34.0 10.5 38.0 20-21 22.619761813781682 22.5 11.0 33.5 10.5 38.0 22-23 22.80004670318006 22.5 11.0 34.0 10.5 38.0 24-25 23.018575128433746 23.0 11.0 34.0 10.0 38.0 26-27 22.231700844902985 22.0 11.0 34.0 10.0 38.0 28-29 22.304324289899377 22.0 11.0 34.0 10.5 38.0 30-31 22.42642126268416 21.0 11.0 34.0 11.0 38.0 32-33 22.62226680253046 21.5 11.0 34.0 11.0 38.0 34-35 22.70426272661657 22.5 11.0 34.0 11.0 38.0 36-37 22.510338385768264 21.5 11.0 34.0 11.0 38.0 38-39 22.34619793656859 21.0 11.0 34.0 11.0 38.0 40-41 22.270708614613852 21.0 11.0 34.0 11.0 38.0 42-43 22.49038339065087 21.5 11.0 34.0 11.0 38.0 44-45 22.67718549653972 22.5 11.0 34.0 11.0 38.0 46-47 22.516558400203795 22.0 11.0 34.0 11.0 38.0 48-49 22.137413492973295 21.0 11.0 34.0 11.0 38.0 50-51 21.897613892073196 21.0 11.0 33.5 11.0 38.0 52-53 22.32642338555598 21.5 11.0 34.0 11.0 38.0 54-55 22.284040249649728 21.5 11.0 34.0 11.0 38.0 56-57 22.208826901031713 21.5 11.0 34.0 11.0 38.0 58-59 22.149418333121048 21.0 11.0 34.0 11.0 38.0 60-61 22.37009085891394 22.0 11.0 34.0 11.0 38.0 62-63 22.070288285993293 21.0 11.0 34.0 11.0 38.0 64-65 22.034411752218404 21.0 11.0 34.0 11.0 38.0 66-67 22.457107374856704 22.5 11.0 34.0 11.0 38.0 68-69 22.22070436887021 22.0 11.0 33.0 11.0 38.0 70-71 22.382297371884686 22.5 11.0 34.0 11.0 38.0 72-73 22.14962000594404 21.5 11.0 33.0 11.0 38.0 74-75 22.263480236063344 22.0 11.0 33.0 11.0 38.0 76 21.941111535685476 22.0 11.0 33.0 11.0 37.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 11 3.0 12 59.0 13 565.0 14 1866.0 15 3290.0 16 4314.0 17 5146.0 18 5236.0 19 4632.0 20 3511.0 21 2564.0 22 1704.0 23 1208.0 24 836.0 25 693.0 26 523.0 27 467.0 28 480.0 29 483.0 30 458.0 31 582.0 32 646.0 33 712.0 34 961.0 35 1295.0 36 1936.0 37 2936.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.133188978049507 20.891181590455567 9.090137137519637 48.88549229397529 2 10.977370186388145 21.262684159130472 28.36581327219462 39.394132382286756 3 18.56875981828217 20.03990999023479 33.62416677281026 27.76716341867278 4 19.07824905532204 33.859805544941196 18.169659915934275 28.89228548380249 5 10.368105973761304 26.981700844902985 26.334224939498153 36.31596824183756 6 15.628582346197936 48.0851696174585 10.376597461045302 25.909650575298265 7 14.986942952378932 37.79112970000637 11.460478546103054 35.76144880151165 8 13.4632530887785 43.65473612703265 16.81314482231563 26.06886596187322 9 18.603367375103506 22.155459776216055 12.418522686256608 46.82265016242383 10-11 14.230213994565217 34.78367017663043 20.963187839673914 30.022927989130434 12-13 14.118308902357473 24.33792232329558 24.712613176805256 36.83115559754169 14-15 26.925444741646498 28.22570373200866 16.765380206343142 28.083471320001696 16-17 28.9520332020677 24.3708271857851 15.382492490261221 31.294647121885976 18-19 19.085022821356542 23.964547287973677 21.307716802887168 35.64271308778261 20-21 26.409586889143633 23.238016388570458 17.404364624463973 32.94803209782194 22-23 28.680607154229914 22.41481795987687 15.966457913172698 32.938116972720515 24-25 18.097189198369566 32.918648097826086 14.734417459239129 34.24974524456522 26-27 24.58285568717361 32.88859168683395 16.562645947437694 25.965906678554752 28-29 19.482421875 30.0239894701087 21.493928328804348 28.999660326086957 30-31 21.473304320135867 27.71680288716697 22.083642925379472 28.726249867317694 32-33 16.645437948456674 30.784825712223494 22.368700377871185 30.201035961448646 34-35 15.671705163043478 35.028872282608695 20.368758491847828 28.9306640625 36-37 23.9192288092407 25.36945812807882 21.20349923560387 29.50781382707661 38-39 25.01857710027388 22.344536209422305 24.8572217150379 27.779664975265916 40-41 19.242975873305664 29.986944199721897 21.517657173790745 29.25242275318169 42-43 13.667338923681138 29.20709054240527 24.10465980256873 33.02091073134486 44-45 13.405727872959257 24.10143727575738 29.068212215782435 33.424622635500924 46-47 17.337536887247097 27.553446701908584 24.245801753603804 30.86321465724052 48-49 18.95830679743557 28.602513480236063 22.331550121003694 30.10762960132467 50-51 26.96239212814062 27.459159952870742 16.903905147066627 28.674542771922003 52-53 12.258763083586336 32.586356977558864 21.509097471391268 33.64578246746353 54-55 16.161015689688117 26.265896690091505 21.03246215579287 36.54062546442751 56-57 18.545176597980827 29.142117052560064 18.672569190101594 33.64013715935752 58-59 16.70187805887911 30.251717218901618 19.452613251515505 33.59379147070376 60-61 13.205143178705287 27.23633776796237 21.21720480341463 38.341314249917716 62-63 16.477357168637607 28.51425659752447 19.869004904354473 35.13938132948345 64-65 17.39375086262727 26.59015383962034 19.614817016849102 36.401278280903284 66-67 13.716039027911965 36.867362430857106 15.15038911125503 34.266209429975895 68-69 14.986572693209924 39.620638778911164 13.745740943201962 31.647047584676947 70-71 12.799855644716171 37.19589861164183 15.606292192077442 34.397953551564555 72-73 12.518045176630435 37.00534986413043 18.086574388586957 32.39003057065217 74-75 12.742308753901357 33.650395974436826 17.217987643049746 36.38930762861207 76 10.557265683048508 31.62509287761384 15.327459929943743 42.490181509393906 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 0.5 14 1.0 15 1.0 16 4.0 17 7.0 18 6.0 19 4.0 20 6.5 21 10.0 22 12.5 23 20.0 24 28.5 25 32.0 26 34.0 27 45.5 28 90.0 29 125.0 30 132.0 31 178.5 32 252.0 33 286.0 34 342.0 35 442.0 36 595.5 37 705.0 38 822.0 39 1085.5 40 1359.5 41 1650.5 42 1814.0 43 1983.0 44 2319.0 45 2616.5 46 2747.0 47 2858.0 48 2978.0 49 2976.0 50 2965.0 51 2951.0 52 2881.5 53 2691.0 54 2556.0 55 2431.5 56 2234.5 57 1967.5 58 1773.0 59 1659.5 60 1400.0 61 1155.5 62 1057.0 63 970.0 64 802.5 65 664.0 66 516.0 67 426.0 68 403.0 69 314.5 70 242.5 71 236.0 72 213.5 73 165.0 74 125.5 75 112.0 76 101.0 77 82.5 78 65.0 79 55.0 80 47.5 81 38.5 82 32.5 83 28.0 84 25.0 85 17.0 86 12.5 87 13.0 88 10.0 89 7.0 90 7.5 91 5.0 92 2.0 93 5.5 94 5.5 95 2.0 96 2.0 97 1.5 98 2.5 99 3.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.01061435910499724 8 0.0 9 0.014860102746996135 10-11 0.0042457436419988965 12-13 0.0010614359104997241 14-15 0.0 16-17 0.0010614359104997241 18-19 0.0021228718209994482 20-21 0.0 22-23 0.0021228718209994482 24-25 0.0042457436419988965 26-27 0.0 28-29 0.0042457436419988965 30-31 0.0021228718209994482 32-33 0.0 34-35 0.0042457436419988965 36-37 0.02122871820999448 38-39 0.01061435910499724 40-41 0.0010614359104997241 42-43 0.0021228718209994482 44-45 0.006368615462998345 46-47 0.006368615462998345 48-49 0.0 50-51 0.0031843077314991724 52-53 0.01061435910499724 54-55 0.01061435910499724 56-57 0.015921538657495862 58-59 0.020167282299494757 60-61 0.030781641404491997 62-63 0.01061435910499724 64-65 0.024413025941493652 66-67 0.024413025941493652 68-69 0.0010614359104997241 70-71 0.0 72-73 0.0042457436419988965 74-75 0.014860102746996135 76 0.0021228718209994482 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 47106.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 94.55271090731542 #Duplication Level Percentage of deduplicated Percentage of total 1 97.08352043107318 91.79510041183714 2 1.493039964077234 2.823419521929266 3 0.7431522227211496 2.108011718252452 4 0.35473731477323756 1.341654990871651 5 0.1571621014818141 0.7430051373498069 6 0.07633587786259542 0.43306585148388743 7 0.042658284687920975 0.2823419521929266 8 0.024696901661427927 0.18681272024795142 9 0.011225864391558149 0.09552923194497516 >10 0.01347103726986978 0.19105846388995032 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.014860102746996137 0.0 2 0.0 0.0 0.0 0.014860102746996137 0.0 3 0.0 0.0 0.0 0.014860102746996137 0.0 4 0.0 0.0 0.0 0.014860102746996137 0.0 5 0.0 0.0 0.0 0.019105846388995033 0.0 6 0.0 0.0 0.0 0.019105846388995033 0.0 7 0.0 0.0 0.0 0.019105846388995033 0.0 8 0.0 0.0 0.0 0.019105846388995033 0.0 9 0.0 0.0 0.0 0.019105846388995033 0.0 10 0.0 0.0 0.0 0.02122871820999448 0.0 11 0.0 0.0 0.0 0.02122871820999448 0.0 12 0.0 0.0 0.0 0.025474461851993375 0.0 13 0.0 0.0 0.0 0.029720205493992274 0.0 14 0.0 0.0 0.0 0.03184307731499172 0.0 15 0.0 0.0 0.0 0.03184307731499172 0.0 16 0.0 0.0 0.0 0.03184307731499172 0.0 17 0.0 0.0 0.0 0.03821169277799007 0.0 18 0.0 0.0 0.0 0.040334564598989514 0.0 19 0.0 0.0 0.0 0.04245743641998896 0.0 20 0.0 0.0 0.0 0.0530717955249862 0.0 21 0.0 0.0 0.0 0.0530717955249862 0.0 22 0.0 0.0 0.0 0.06793189827198234 0.0 23 0.0 0.0 0.0 0.06793189827198234 0.0 24 0.0 0.0 0.0 0.07217764191398124 0.0 25 0.0 0.0 0.0 0.08066912919797903 0.0 26 0.0 0.0 0.0 0.08916061648197682 0.0 27 0.0 0.0 0.0 0.09765210376597461 0.0 28 0.0 0.0 0.0 0.11251220651297075 0.0 29 0.0 0.0 0.0 0.14223241200696302 0.0 30 0.0 0.0 0.0 0.1592153865749586 0.0 31 0.0 0.0 0.0 0.17407548932195474 0.0 32 0.0 0.0 0.0 0.20167282299494757 0.0 33 0.0 0.0 0.0 0.25262174669893434 0.0 34 0.0 0.0 0.0 0.2950791831189233 0.0 35 0.0 0.0 0.0 0.3396594913599117 0.0 36 0.0 0.0 0.0 0.4776461597248758 0.0 37 0.0 0.0 0.0 0.6177556999108393 0.0 38 0.0 0.0 0.0 0.7790939583067974 0.0 39 0.0 0.0 0.0 0.9552923194497516 0.0 40 0.0 0.0 0.0 1.1909310915806903 0.0 41 0.0 0.0 0.0 1.4223241200696302 0.0 42 0.0 0.0 0.0 1.5645565320765933 0.0 43 0.0 0.0 0.0 1.7534921241455441 0.0 44 0.0 0.0 0.0 2.018851101770475 0.0 45 0.0 0.0 0.0 2.2056638220184266 0.0 46 0.0 0.0 0.0 2.4137052604763722 0.0 47 0.0 0.0 0.0 2.628115314397317 0.0 48 0.0 0.0 0.0 2.8021908037192715 0.0 49 0.0 0.0 0.0 3.0059864985352185 0.0 50 0.0 0.0 0.0 3.211905065172165 0.0 51 0.0 0.0 0.0 3.4220693754511102 0.0 52 0.0 0.0 0.0 3.6470937884770516 0.0 53 0.0 0.0 0.0 3.823292149620006 0.0 54 0.0 0.0 0.0 4.005859126225959 0.0 55 0.0 0.0 0.0 4.175688871905915 0.0 56 0.0 0.0 0.0 4.366747335795865 0.0 57 0.0 0.0 0.0 4.572665902432811 0.0 58 0.0 0.0 0.0 4.763724366322761 0.0 59 0.0 0.0 0.0 4.910202521971724 0.0 60 0.0 0.0 0.0 5.043943446694689 0.0 61 0.0 0.0 0.0 5.209527448732645 0.0 62 0.0 0.0 0.0 5.3687428353076045 0.0 63 0.0 0.0 0.0 5.566169914660553 0.0 64 0.0 0.0 0.0 5.725385301235511 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGAT 15 0.0022116443 70.00001 37 GCTGCAA 15 0.0022116443 70.00001 60 AGTTGTA 15 0.0022116443 70.00001 34 CTCGGGG 15 0.0022116443 70.00001 44 TCGTCAT 15 0.0022116443 70.00001 8 GAAGTCG 15 0.0022116443 70.00001 14 TGTAGTC 15 0.0022116443 70.00001 18 ATCGGTG 15 0.0022116443 70.00001 44 ATGCATA 15 0.0022116443 70.00001 28 CTGATGC 15 0.0022116443 70.00001 12 CTTACTG 15 0.0022116443 70.00001 42 CGGCCAT 20 7.8500656E-5 70.0 2 CCGGATC 20 7.8500656E-5 70.0 55 CTTAGGT 20 7.8500656E-5 70.0 31 ATCTCGG 80 0.0 65.625 42 GATCTCG 75 0.0 65.333336 41 TCTCGGT 75 0.0 60.666668 43 GCCCCTA 30 8.256509E-6 58.333336 68 ATATGTA 30 8.256509E-6 58.333336 26 ATGCAGT 30 8.256509E-6 58.333336 29 >>END_MODULE