SRR1779818_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779818_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	219164
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	27842	12.703728714569912	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	3650	1.665419503203081	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	2058	0.9390228322169699	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	666	0.303882024420069	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	598	0.2728550309357376	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	367	0.16745450895220018	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTAACTCGTATGCCGT	315	0.1437279845230056	No Hit
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	272	0.12410797393732546	Illumina PCR Primer Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAC	20	7.914449E-5	69.99977	45
TCGGATT	15	0.0022265508	69.967834	32
CCGAGTT	15	0.0022265508	69.967834	44
TAATACG	20	7.9323676E-5	69.96783	4
GCTTGAC	50	1.4551915E-11	63.100616	56
TCGTTGT	25	2.3921816E-4	55.974262	34
TATATCG	25	2.3921816E-4	55.974262	36
GCGTCTA	25	2.3921816E-4	55.974262	44
TCGTATG	4210	0.0	52.683613	40
CGTATGC	4200	0.0	52.642464	41
CTCGTAT	4190	0.0	52.60111	39
CTTGACA	60	8.367351E-11	52.54781	57
TATGCCG	4195	0.0	52.538418	43
CCTTTGG	20	0.0069258623	52.535805	64
GTCTTCT	4175	0.0	52.51483	49
CAACGCG	20	0.006957204	52.475872	9
AACGCGA	20	0.006957204	52.475872	10
AACTCGT	80	0.0	52.475872	37
GCCGTCT	4165	0.0	52.472733	46
CCGTCTT	4165	0.0	52.38864	47