##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779817_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 92161 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.749601241305974 32.0 21.0 34.0 12.0 34.0 2 26.993250941287528 32.0 21.0 34.0 12.0 34.0 3 26.90945193737047 33.0 21.0 34.0 11.0 34.0 4 27.22328316750035 32.0 21.0 34.0 12.0 34.0 5 27.57629583012337 34.0 23.0 34.0 11.0 34.0 6 29.635214461648637 35.0 23.0 38.0 11.0 38.0 7 29.952724037282582 36.0 23.0 38.0 12.0 38.0 8 29.225789650719936 34.0 21.0 38.0 11.0 38.0 9 30.169768123175746 36.0 24.0 38.0 11.0 38.0 10-11 28.78068814357483 34.0 21.0 38.0 11.0 38.0 12-13 29.377572943001923 35.0 22.0 38.0 11.0 38.0 14-15 28.36600622823103 34.0 21.0 38.0 11.0 38.0 16-17 28.844386454140036 35.0 21.5 38.0 11.0 38.0 18-19 29.43579171232951 36.0 21.0 38.0 11.0 38.0 20-21 28.51054133527197 33.5 21.5 38.0 11.0 38.0 22-23 29.202140818784518 35.0 22.0 38.0 11.0 38.0 24-25 29.498459218107442 35.5 22.0 38.0 11.0 38.0 26-27 28.502246069378586 34.0 21.0 38.0 11.0 38.0 28-29 29.422917503065285 35.5 21.0 38.0 11.0 38.0 30-31 29.773635268714532 37.0 22.0 38.0 11.0 38.0 32-33 29.97316652380074 37.0 23.0 38.0 11.0 38.0 34-35 29.93327437853322 37.0 23.0 38.0 11.0 38.0 36-37 29.447054610952573 36.0 21.5 38.0 11.0 38.0 38-39 29.382054231182387 36.0 21.5 38.0 11.0 38.0 40-41 29.34180944217185 35.5 21.0 38.0 11.0 38.0 42-43 29.69527782901661 36.5 22.0 38.0 11.0 38.0 44-45 29.76701099163421 36.0 22.5 38.0 11.0 38.0 46-47 29.68134026323499 36.0 22.0 38.0 11.0 38.0 48-49 29.332581026681567 35.5 21.5 38.0 11.0 38.0 50-51 28.75682230010525 35.0 21.0 38.0 11.0 38.0 52-53 29.287681340263234 35.0 21.5 38.0 11.0 38.0 54-55 29.41237616779332 35.5 21.5 38.0 11.0 38.0 56-57 29.44945801369343 36.0 21.5 38.0 11.0 38.0 58-59 29.642023198533003 36.0 21.5 38.0 11.0 38.0 60-61 29.604398823797485 36.0 22.0 38.0 11.0 38.0 62-63 29.532345569167003 36.0 21.5 38.0 11.0 38.0 64-65 29.547162031661983 36.5 21.5 38.0 11.0 38.0 66-67 29.540212237280414 36.0 22.0 38.0 11.0 38.0 68-69 28.970589511832554 34.5 21.0 38.0 11.0 38.0 70-71 29.0539056650861 34.5 21.5 38.0 11.0 38.0 72-73 29.10489795032606 35.0 21.0 38.0 11.0 38.0 74-75 29.255661288397476 35.5 21.5 38.0 11.0 38.0 76 28.417671249226895 34.0 21.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 32.0 13 470.0 14 1511.0 15 2599.0 16 3536.0 17 4380.0 18 4524.0 19 4215.0 20 3333.0 21 2483.0 22 1903.0 23 1578.0 24 1372.0 25 1287.0 26 1334.0 27 1460.0 28 1591.0 29 1832.0 30 2074.0 31 2541.0 32 2940.0 33 3853.0 34 4925.0 35 6940.0 36 11371.0 37 18073.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.6447521185751 18.727010340599605 9.377068391184991 32.251169149640305 2 18.451405692212543 21.92901552717527 29.117522596325994 30.502056184286197 3 16.80971343626914 20.063801391043935 35.14067772702119 27.98580744566574 4 12.358806870585171 29.714304315274358 26.565466954568635 31.361421859571838 5 13.217087488199997 32.02113692342748 34.82492594481397 19.936849643558556 6 22.693634844506175 38.309208099134096 16.546583042166713 22.450574014193016 7 22.584285512766257 32.61282376813482 16.933059886932085 27.869830832166848 8 19.983723958333332 37.80381944444444 15.520833333333334 26.691623263888886 9 21.39113450165482 19.370625576474417 17.061472519125388 42.17676740274538 10-11 20.363287162877 29.294639127155932 22.36364524162177 27.978428468345296 12-13 20.495654344028384 23.265264048784193 25.67137943381691 30.567702173370513 14-15 25.076361347865948 25.993240054036164 20.480032117881304 28.450366480216577 16-17 26.04206791412807 25.753441007807034 20.526689850858016 27.67780122720688 18-19 20.9148270118653 25.770539119678382 24.16300001627613 29.151633852180186 20-21 24.74799535595317 24.7859723744317 22.55346621672942 27.912566052885712 22-23 25.60112847222222 24.56488715277778 21.4501953125 28.383789062499996 24-25 20.75825886923073 29.2957242142613 21.093008241236568 28.853008675271408 26-27 23.601217441311626 29.329810493649667 22.168391013503616 24.900581051535095 28-29 21.163340820556225 28.21652180518029 24.02964506223076 26.590492312032726 30-31 22.186174195158472 27.133494645240397 24.154468810017253 26.52586234958388 32-33 19.940647345406408 28.692179989366434 24.077972244224778 27.289200421002374 34-35 19.673065028917414 30.03233542030621 23.66724899358717 26.627350557189207 36-37 23.737587497965162 26.048619024363774 23.615497314015954 26.59829616365511 38-39 23.735269223256722 24.54207088135078 26.001584304533715 25.721075590858778 40-41 20.893983865104897 28.14600615231037 24.213735819575632 26.746274163009097 42-43 18.591478995882184 27.436374585641353 25.57006526657299 28.402081151903474 44-45 18.221079245201125 24.91997352344369 27.9571817658995 28.901765465455693 46-47 20.31478035362605 26.23549389916395 25.57034272104341 27.879383026166593 48-49 20.753355540846997 27.05374290643548 25.01274942763208 27.18015212508545 50-51 24.664438633231697 26.109766816046182 22.84801267374863 26.377781876973494 52-53 17.4401128564065 28.377417867122436 25.077453134749465 29.105016141721602 54-55 19.12525908000825 26.461970852820855 24.79300728136903 29.619762785801875 56-57 20.346616312887964 27.321265789816383 23.497525719494725 28.83459217780093 58-59 19.112859468258275 27.87194791101465 24.244167118827995 28.77102550189908 60-61 17.982429961311187 26.46900825325165 24.553016696420336 30.99554508901683 62-63 19.254058512023615 26.849118847122146 24.539890615504817 29.356932025349426 64-65 19.46180894705997 26.03318790562393 23.883245425538842 30.621757721777254 66-67 18.09001871998698 30.422420575707427 21.816652649285114 29.670908055020483 68-69 18.517252604166668 31.993815104166668 21.03732638888889 28.45160590277778 70-71 17.66429218591479 30.806039463761593 21.910688418574118 29.6189799317495 72-73 17.844993625044083 30.199386919133005 22.836448471366953 29.119170984455963 74-75 17.896672960479197 28.966187034746188 22.379386678820236 30.75775332595438 76 16.909905706442128 28.324960123265225 21.636519493484087 33.12861467680856 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 0.5 12 0.0 13 0.5 14 4.5 15 10.0 16 13.5 17 15.0 18 20.0 19 26.0 20 34.0 21 41.0 22 68.0 23 116.0 24 183.5 25 230.0 26 271.0 27 348.0 28 482.0 29 580.0 30 615.5 31 762.0 32 1067.0 33 1261.0 34 1443.0 35 1814.5 36 2167.5 37 2331.0 38 2556.5 39 3003.0 40 3443.5 41 3961.5 42 4260.0 43 4442.0 44 4786.5 45 5084.5 46 5220.0 47 5257.0 48 5253.5 49 5119.5 50 5026.0 51 4833.5 52 4508.0 53 4194.5 54 4014.0 55 3761.5 56 3300.0 57 2914.0 58 2737.0 59 2522.0 60 2155.5 61 1786.0 62 1568.0 63 1475.5 64 1296.0 65 1106.5 66 953.0 67 902.0 68 793.0 69 657.5 70 577.0 71 523.0 72 495.0 73 438.0 74 359.5 75 310.0 76 323.0 77 307.5 78 246.0 79 213.0 80 209.5 81 162.5 82 101.0 83 83.0 84 79.5 85 61.5 86 49.5 87 52.0 88 40.5 89 25.0 90 19.5 91 19.5 92 21.0 93 13.0 94 5.5 95 4.5 96 3.0 97 2.5 98 3.5 99 4.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0032551730124456115 7 0.004340230683260815 8 0.0010850576708152037 9 0.006510346024891223 10-11 0.0027126441770380094 12-13 0.0 14-15 5.425288354076018E-4 16-17 5.425288354076018E-4 18-19 0.0016275865062228057 20-21 0.0 22-23 0.0010850576708152037 24-25 0.0027126441770380094 26-27 5.425288354076018E-4 28-29 0.004340230683260815 30-31 0.0 32-33 0.0 34-35 0.0021701153416304074 36-37 0.01736092273304326 38-39 0.007595403695706426 40-41 5.425288354076018E-4 42-43 5.425288354076018E-4 44-45 0.004340230683260815 46-47 0.0016275865062228057 48-49 0.0 50-51 0.0021701153416304074 52-53 0.009222990201929232 54-55 0.00868046136652163 56-57 0.01410574972059765 58-59 0.011935634378967242 60-61 0.01681839389763566 62-63 0.009765519037336834 64-65 0.020616095745488873 66-67 0.014648278556005253 68-69 0.0010850576708152037 70-71 5.425288354076018E-4 72-73 0.003797701847853213 74-75 0.007595403695706426 76 0.0021701153416304074 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 92161.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.27256648690879 #Duplication Level Percentage of deduplicated Percentage of total 1 87.4668829413355 70.21191176311021 2 6.382806163828062 10.247284643178785 3 3.13463098134631 7.548746215861373 4 1.6031359826980265 5.147513590347327 5 0.7366855907001892 2.9567821529714307 6 0.3433360367666937 1.6536278903223707 7 0.17166801838334686 0.9646162693547162 8 0.06217896728845634 0.39930122285999503 9 0.0364963503649635 0.2636690140080945 >10 0.06217896728845634 0.606547237985699 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004340230683260816 0.0 2 0.0 0.0 0.0 0.004340230683260816 0.0 3 0.0 0.0 0.0 0.004340230683260816 0.0 4 0.0 0.0 0.0 0.005425288354076019 0.0 5 0.0 0.0 0.0 0.009765519037336835 0.0 6 0.0 0.0 0.0 0.009765519037336835 0.0 7 0.0 0.0 0.0 0.009765519037336835 0.0 8 0.0 0.0 0.0 0.010850576708152038 0.0 9 0.0 0.0 0.0 0.017360922733043262 0.0 10 0.0 0.0 0.0 0.020616095745488873 0.0 11 0.0 0.0 0.0 0.021701153416304075 0.0 12 0.0 0.0 0.0 0.02278621108711928 0.0 13 0.0 0.0 0.0 0.027126441770380094 0.0 14 0.0 0.0 0.0 0.027126441770380094 0.0 15 0.0 0.0 0.0 0.029296557112010502 0.0 16 0.0 0.0 0.0 0.030381614782825708 0.0 17 0.0 0.0 0.0 0.030381614782825708 0.0 18 0.0 0.0 0.0 0.030381614782825708 0.0 19 0.0 0.0 0.0 0.030381614782825708 0.0 20 0.0 0.0 0.0 0.030381614782825708 0.0 21 0.0 0.0 0.0 0.03580690313690173 0.0 22 0.0 0.0 0.0 0.04991265285749938 0.0 23 0.0 0.0 0.0 0.053167825869944986 0.0 24 0.0 0.0 0.0 0.07269886394461865 0.0 25 0.0 0.0 0.0 0.07378392161543386 0.0 26 0.0 0.0 0.0 0.07378392161543386 0.0 27 0.0 0.0 0.0 0.09548507503173793 0.0 28 0.0 0.0 0.0 0.10959082475233559 0.0 29 0.0 0.0 0.0 0.1421425548767917 0.0 30 0.0 0.0 0.0 0.17686440034287823 0.0 31 0.0 0.0 0.0 0.2213517648463016 0.0 32 0.0 0.0 0.0 0.2756046483870618 0.0 33 0.001085057670815204 0.0 0.0 0.30381614782825705 0.0 34 0.001085057670815204 0.0 0.0 0.39930122285999503 0.0 35 0.001085057670815204 0.0 0.0 0.4763403174878745 0.0 36 0.001085057670815204 0.0 0.0 0.6184828723646661 0.0 37 0.001085057670815204 0.0 0.0 0.8604507329564567 0.0 38 0.001085057670815204 0.0 0.0 1.1696921691387898 0.0 39 0.001085057670815204 0.0 0.0 1.4452968175258516 0.0 40 0.001085057670815204 0.0 0.0 1.8272371176528033 0.0 41 0.001085057670815204 0.0 0.0 2.1907314373758964 0.0 42 0.001085057670815204 0.0 0.0 2.588947602565076 0.0 43 0.001085057670815204 0.0 0.0 3.0056097481581148 0.0 44 0.001085057670815204 0.0 0.0 3.5264374301494126 0.0 45 0.001085057670815204 0.0 0.0 4.04943522748234 0.0 46 0.001085057670815204 0.0 0.0 4.546391640715704 0.0 47 0.001085057670815204 0.0 0.0 5.055283688328035 0.0 48 0.001085057670815204 0.0 0.0 5.48171135295841 0.0 49 0.001085057670815204 0.0 0.0 5.918989594296937 0.0 50 0.001085057670815204 0.0 0.0 6.335651739889975 0.0 51 0.001085057670815204 0.0 0.0 6.715421924675296 0.0 52 0.001085057670815204 0.0 0.0 7.163550742721975 0.0 53 0.001085057670815204 0.0 0.0 7.697399116763056 0.0 54 0.001085057670815204 0.0 0.0 8.167229088226039 0.0 55 0.001085057670815204 0.0 0.0 8.62620848298087 0.0 56 0.001085057670815204 0.0 0.0 9.059146493636137 0.0 57 0.001085057670815204 0.0 0.0 9.462787947179393 0.0 58 0.001085057670815204 0.0 0.0 9.854493766343682 0.0 59 0.001085057670815204 0.0 0.0 10.238604181812264 0.0 60 0.001085057670815204 0.0 0.0 10.581482405789867 0.0 61 0.001085057670815204 0.0 0.0 10.98837903234557 0.0 62 0.001085057670815204 0.0 0.0 11.320406679615022 0.0 63 0.001085057670815204 0.0 0.0 11.683900999338114 0.0 64 0.001085057670815204 0.0 0.0 12.022438992632459 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATGAC 15 0.0022188758 69.9962 48 ATAAGTT 15 0.0022188758 69.9962 45 CGCAAGT 15 0.0022188758 69.9962 53 AATCGGA 20 7.892163E-5 69.9962 10 ACGAATA 25 2.8212053E-6 69.9962 24 ATCTCGG 95 0.0 55.26016 42 TCGGACG 45 2.6684575E-8 54.44149 12 ATCGGAC 45 2.6684575E-8 54.44149 11 ATCTAGT 20 0.006918475 52.52565 31 GGCAGAT 20 0.006933352 52.49715 12 GTGGCCG 20 0.006933352 52.49715 48 TGGCCGC 20 0.006933352 52.49715 49 TATGACT 20 0.006933352 52.49715 49 GTGGACT 20 0.006933352 52.49715 20 CTCGGTG 80 0.0 52.49715 44 TCTCGGT 80 0.0 52.49715 43 CGGTGGA 20 0.006933352 52.49715 46 TATAGAG 20 0.006933352 52.49715 3 GTAAGCG 20 0.006933352 52.49715 48 GACGAAT 40 7.411563E-7 52.49715 23 >>END_MODULE