SRR1779817_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779817_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	92161
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	20184	21.900804027734075	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	2490	2.7017936003298577	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	1506	1.6340968522476969	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	550	0.5967817189483621	RNA PCR Primer, Index 24 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	453	0.4915311248792873	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	345	0.3743448964312453	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT	309	0.335282820281898	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	204	0.2213517648463016	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAGCTCGTATGCCGT	147	0.15950347760983496	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	141	0.15299313158494374	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATATCGTATGCCGT	121	0.13129197816863966	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCG	118	0.12803680515619406	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	113	0.12261151680211804	RNA PCR Primer, Index 24 (95% over 21bp)
CCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	110	0.11935634378967243	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTTATG	15	0.002214986	70.027145	49
AGACTGG	15	0.0022197624	69.98915	36
ACTAGAG	15	0.0022197624	69.98915	3
TAGGGAA	15	0.0022197624	69.98915	5
TCCGGGC	15	0.0022197624	69.98915	8
TCTTTAT	50	9.622454E-10	56.021717	1
CCGTGAT	25	2.3812968E-4	55.991318	27
ATCTCGT	2865	0.0	53.865997	37
AACTCGT	65	3.6379788E-12	53.837807	37
CAACTCG	65	3.6379788E-12	53.837807	36
TCTCGTA	2855	0.0	53.809525	38
CATCTCG	2860	0.0	53.715443	36
CTCGTAT	2995	0.0	53.631084	39
GCATCTC	2865	0.0	53.621704	35
TAGCATC	2860	0.0	53.593086	33
AGCATCT	2860	0.0	53.593086	34
CCGTCTT	2995	0.0	53.51424	47
CGTATGC	3030	0.0	53.473557	41
TCTTCTG	3020	0.0	53.44787	50
CGTCTTC	2995	0.0	53.426384	48