##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779817_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 92161 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.52850989030067 34.0 34.0 34.0 34.0 34.0 2 33.623083516888926 34.0 34.0 34.0 34.0 34.0 3 33.744664228903765 34.0 34.0 34.0 34.0 34.0 4 33.51542409479064 34.0 34.0 34.0 34.0 34.0 5 33.59322272978809 34.0 34.0 34.0 34.0 34.0 6 37.24749080413624 38.0 38.0 38.0 36.0 38.0 7 37.30536778029752 38.0 38.0 38.0 37.0 38.0 8 37.2000520827682 38.0 38.0 38.0 36.0 38.0 9 37.11179349182409 38.0 38.0 38.0 36.0 38.0 10-11 37.05920074651968 38.0 37.5 38.0 35.5 38.0 12-13 37.243047492974256 38.0 38.0 38.0 36.5 38.0 14-15 37.260782760603725 38.0 38.0 38.0 36.0 38.0 16-17 37.13055956424084 38.0 38.0 38.0 36.0 38.0 18-19 36.981640824209805 38.0 38.0 38.0 35.5 38.0 20-21 37.01866299193802 38.0 37.5 38.0 35.5 38.0 22-23 37.02478814248977 38.0 37.5 38.0 35.5 38.0 24-25 37.18046136652163 38.0 38.0 38.0 36.0 38.0 26-27 37.069150725361055 38.0 38.0 38.0 36.0 38.0 28-29 36.493999631080385 38.0 37.0 38.0 34.0 38.0 30-31 36.74353576892612 38.0 37.0 38.0 34.5 38.0 32-33 36.883529909614694 38.0 37.0 38.0 35.5 38.0 34-35 36.93167391846877 38.0 38.0 38.0 35.5 38.0 36-37 36.84710452360543 38.0 37.5 38.0 35.0 38.0 38-39 35.54886557220516 38.0 36.5 38.0 30.5 38.0 40-41 36.42203860635193 38.0 37.0 38.0 34.0 38.0 42-43 37.059944011024186 38.0 37.5 38.0 36.0 38.0 44-45 36.789395731383124 38.0 37.0 38.0 35.0 38.0 46-47 36.95415631340806 38.0 37.5 38.0 35.5 38.0 48-49 36.52264515358991 38.0 37.0 38.0 34.0 38.0 50-51 36.641806186998835 38.0 37.0 38.0 34.0 38.0 52-53 36.55722051627044 38.0 37.0 38.0 34.0 38.0 54-55 36.60239146710647 38.0 37.0 38.0 34.0 38.0 56-57 36.44478141513221 38.0 37.0 38.0 34.0 38.0 58-59 36.49689673506147 38.0 37.0 38.0 34.0 38.0 60-61 36.07372966873189 38.0 37.0 38.0 34.0 38.0 62-63 35.969645511658946 38.0 37.0 38.0 33.0 38.0 64-65 36.46551144193314 38.0 37.0 38.0 34.0 38.0 66-67 36.161499983724134 38.0 37.0 38.0 32.5 38.0 68-69 36.14023285337616 38.0 37.0 38.0 33.5 38.0 70-71 34.38104512754853 38.0 34.0 38.0 26.0 38.0 72-73 31.26218248499908 37.5 24.0 38.0 11.0 38.0 74-75 30.73541953754842 37.5 23.5 38.0 11.0 38.0 76 30.6170614468159 37.0 24.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 0.0 21 2.0 22 6.0 23 3.0 24 23.0 25 65.0 26 124.0 27 227.0 28 414.0 29 663.0 30 1133.0 31 1777.0 32 2728.0 33 4343.0 34 7551.0 35 15318.0 36 17460.0 37 40323.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.41331104695335 13.28065643519222 11.32155338962815 44.984479128226276 2 15.159340718959214 14.154577315784334 49.47754473150248 21.208537233753972 3 14.43343713718384 15.872223608684802 48.50641811612287 21.187921138008488 4 10.414383524484325 35.96857672985319 30.73859875652391 22.878440989138575 5 10.149629452805417 27.513807358861126 50.40743915539111 11.929124032942351 6 20.975249834528707 51.589066958908866 16.06753398943154 11.36814921713089 7 19.737199032128558 24.89013791082996 16.921474376363104 38.45118868067838 8 17.99242629745771 50.40852421306192 14.010264645565911 17.588784843914453 9 17.19599396707935 16.04149260533197 14.204489968641834 52.55802345894685 10-11 17.871442367161812 32.10360130640944 30.60730677835527 19.417649548073477 12-13 18.08357114180619 16.57425592170224 33.558663642972625 31.783509293518954 14-15 16.58510649841039 16.681676631112943 19.000444873645034 47.73277199683163 16-17 30.571499875218365 30.746194160219613 16.913878972667398 21.768426991894618 18-19 31.250745977148686 21.68216490706481 17.713023947222794 29.354065168563707 20-21 17.813391781773202 18.2056401297729 17.567626219333558 46.413341869120345 22-23 16.751662850880525 32.336346176799296 17.77324464795304 33.13874632436714 24-25 30.257703993055557 32.23687065972222 17.745768229166668 19.759657118055557 26-27 31.619123056390446 33.85813956011762 18.049934354010915 16.472803029481017 28-29 29.941623897310144 21.543277525200462 18.660279293844468 29.85481928364492 30-31 31.762350668938055 18.44489534618765 32.54304966308959 17.249704321784705 32-33 19.14312995735723 32.56420828767049 31.54805177895205 16.744609976020225 34-35 28.194681047297664 33.38342682913597 21.896463797050814 16.525428326515552 36-37 19.011295450353185 31.82799665802237 18.51922179663849 30.641486094985947 38-39 16.192858150410693 21.407645316348564 31.95983116502642 30.43966536821432 40-41 15.699699439025183 17.796573387875565 34.50212128774645 32.00160588535281 42-43 30.258624898953457 17.423950607906857 32.69079486330912 19.626629629830568 44-45 16.428858193813 31.546424192445826 34.77501329195647 17.249704321784705 46-47 29.682837642820715 18.396067751000967 22.677162791202353 29.243931814975966 48-49 28.572281116741355 17.249704321784705 19.62760820737622 34.55040635409772 50-51 18.046956814272612 17.263981508109193 33.62181695849634 31.06724471912185 52-53 14.59316901637743 17.51592702330175 47.65571582066226 20.235188139658558 54-55 14.403651798217524 17.406289690509016 36.7291221137876 31.46093639748586 56-57 28.598412887957707 17.447376705711214 22.71187728649435 31.24233311983673 58-59 15.563081030917763 18.28473431996657 45.662449867851926 20.48973478126374 60-61 28.283957518166574 30.845457949605738 23.192432719911867 17.678151812315825 62-63 15.450569248635215 47.70021380739969 18.701092913966942 18.148124029998154 64-65 14.259823976906464 49.65110095825149 17.829663472495035 18.25941159234701 66-67 14.370994263758568 49.84343371303597 17.552247553821356 18.233324469384097 68-69 14.31439252133622 49.76371459109874 17.66687826554031 18.255014622024728 70-71 14.950786226654659 47.22406103159014 17.765792358028847 20.059360383726357 72-73 16.141950187204948 40.59580009767215 18.95382277931521 24.308426935807695 74-75 17.014915655198234 38.58537299989691 19.62040769819265 24.779303646712208 76 17.146670717944264 38.93241600833406 19.345212258008505 24.575701015713168 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.5 14 2.0 15 3.5 16 11.0 17 16.0 18 16.0 19 22.5 20 47.0 21 65.0 22 85.0 23 130.5 24 179.5 25 203.0 26 260.5 27 395.0 28 525.5 29 579.0 30 665.5 31 793.0 32 1038.5 33 1243.0 34 1316.0 35 1571.0 36 1927.0 37 2101.0 38 2213.0 39 2669.0 40 6220.5 41 10981.0 42 12534.0 43 11460.0 44 8792.0 45 6096.5 46 4995.0 47 4539.0 48 3809.0 49 3206.5 50 2878.0 51 2827.0 52 2475.5 53 2148.5 54 2122.0 55 1995.5 56 1774.0 57 1611.0 58 1543.0 59 1406.5 60 1193.5 61 1021.5 62 926.0 63 916.0 64 782.0 65 676.5 66 649.5 67 604.0 68 571.0 69 512.5 70 447.5 71 408.0 72 374.0 73 303.5 74 257.0 75 247.0 76 232.5 77 210.0 78 186.0 79 170.0 80 162.5 81 138.5 82 95.5 83 69.0 84 66.5 85 59.5 86 41.5 87 28.0 88 24.0 89 13.5 90 6.5 91 4.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.029296557112010506 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0010850576708152037 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.425288354076018E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.013563220885190049 52-53 0.023871268757934484 54-55 0.04557242217423856 56-57 0.04774253751586897 58-59 0.032009201289048515 60-61 0.029839085947418107 62-63 0.023871268757934484 64-65 0.015190807391412852 66-67 0.029839085947418107 68-69 0.005967817189483621 70-71 0.013020692049782446 72-73 0.01736092273304326 74-75 0.010308047872744436 76 0.009765519037336834 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 92161.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.27268584325257 #Duplication Level Percentage of deduplicated Percentage of total 1 48.66928608495812 14.246807217803624 2 17.46237675142709 10.22341337442085 3 12.665875898880568 11.122926183526655 4 8.34754244198977 9.774199498703357 5 5.367336348135518 7.855817536702076 6 2.961672473867596 5.201766473888087 7 1.8867225146415596 3.8660604811145713 8 0.9229742753354584 2.161434880263886 9 0.5893691155756543 1.5527175269365567 >10 1.0564163392393804 4.511669795249618 >50 0.018533619986655793 0.41340697258059267 >100 0.037067239973311586 2.236303859550135 >500 0.003706723997331159 0.5967817189483621 >1k 0.007413447994662318 4.335890452577554 >5k 0.0 0.0 >10k+ 0.003706723997331159 21.900804027734075 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 20184 21.900804027734075 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 2490 2.7017936003298577 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 1506 1.6340968522476969 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 550 0.5967817189483621 RNA PCR Primer, Index 24 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 453 0.4915311248792873 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 345 0.3743448964312453 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT 309 0.335282820281898 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 204 0.2213517648463016 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAGCTCGTATGCCGT 147 0.15950347760983496 No Hit CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 141 0.15299313158494374 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATATCGTATGCCGT 121 0.13129197816863966 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCG 118 0.12803680515619406 No Hit CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 113 0.12261151680211804 RNA PCR Primer, Index 24 (95% over 21bp) CCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 110 0.11935634378967243 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0032551730124456115 0.0 2 0.0 0.0 0.0 0.0032551730124456115 0.0 3 0.0 0.0 0.0 0.0032551730124456115 0.0 4 0.0 0.0 0.0 0.004340230683260816 0.0 5 0.0 0.0 0.0 0.008680461366521631 0.0 6 0.0 0.0 0.0 0.008680461366521631 0.0 7 0.0 0.0 0.0 0.008680461366521631 0.0 8 0.0 0.0 0.0 0.009765519037336835 0.0 9 0.0 0.0 0.0 0.016275865062228057 0.0 10 0.0 0.0 0.0 0.01953103807467367 0.0 11 0.0 0.0 0.0 0.020616095745488873 0.0 12 0.0 0.0 0.0 0.021701153416304075 0.0 13 0.0 0.0 0.0 0.027126441770380094 0.0 14 0.0 0.0 0.0 0.0282114994411953 0.0 15 0.0 0.0 0.0 0.030381614782825708 0.0 16 0.0 0.0 0.0 0.03146667245364091 0.0 17 0.0 0.0 0.0 0.03146667245364091 0.0 18 0.0 0.0 0.0 0.03146667245364091 0.0 19 0.0 0.0 0.0 0.03146667245364091 0.0 20 0.0 0.0 0.0 0.033636787795271315 0.0 21 0.0 0.0 0.0 0.033636787795271315 0.0 22 0.0 0.0 0.0 0.034721845466086525 0.0 23 0.0 0.0 0.0 0.04557242217423856 0.0 24 0.0 0.0 0.0 0.052082768199129784 0.0 25 0.0 0.0 0.0 0.060763229565651417 0.0 26 0.0 0.0 0.0 0.06184828723646662 0.0 27 0.0 0.0 0.0 0.0835494406527707 0.0 28 0.0 0.0 0.0 0.09982530571499876 0.0 29 0.0 0.0 0.0 0.13563220885190047 0.0 30 0.0 0.0 0.0 0.1736092273304326 0.0 31 0.0 0.0 0.0 0.22243682251711677 0.0 32 0.0 0.0 0.0 0.2832000520827682 0.0 33 0.0 0.0 0.0 0.3168368398780395 0.0 34 0.0 0.0 0.0 0.4210023762762991 0.0 35 0.0 0.0 0.0 0.5099771052831458 0.0 36 0.0 0.0 0.0 0.6662254098805351 0.0 37 0.0 0.0 0.0 0.9700415577087922 0.0 38 0.0 0.0 0.0 1.2868783975868316 0.0 39 0.0 0.0 0.0 1.580929026377752 0.0 40 0.0 0.0 0.0 1.9899957682750837 0.0 41 0.0 0.0 0.0 2.383871702781003 0.0 42 0.0 0.0 0.0 2.8189798287778998 0.0 43 0.0 0.0 0.0 3.2584281854580572 0.0 44 0.0 0.0 0.0 3.833508750990115 0.0 45 0.0 0.0 0.0 4.394483566801576 0.0 46 0.0 0.0 0.0 4.941352632892438 0.0 47 0.0 0.0 0.0 5.494732045008192 0.0 48 0.0 0.0 0.0 5.9667321318128055 0.0 49 0.0 0.0 0.0 6.437647160946605 0.0 50 0.0 0.0 0.0 6.899881728713881 0.0 51 0.0 0.0 0.0 7.306778355269582 0.0 52 0.0 0.0 0.0 7.755992230987077 0.0 53 0.0 0.0 0.0 8.295265893382233 0.0 54 0.0 0.0 0.0 8.76184069183277 0.0 55 0.0 0.0 0.0 9.222990201929232 0.0 56 0.0 0.0 0.0 9.673289135317543 0.0 57 0.0 0.0 0.0 10.084525992556504 0.0 58 0.0 0.0 0.0 10.491422619112205 0.0 59 0.0 0.0 0.0 10.880958322934864 0.0 60 0.0 0.0 0.0 11.244452642657958 0.0 61 0.0 0.0 0.0 11.671965364959147 0.0 62 0.0 0.0 0.0 12.013758531265937 0.0 63 0.0 0.0 0.0 12.40220917741778 0.0 64 0.0 0.0 0.0 12.764618439470057 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTTATG 15 0.002214986 70.027145 49 AGACTGG 15 0.0022197624 69.98915 36 ACTAGAG 15 0.0022197624 69.98915 3 TAGGGAA 15 0.0022197624 69.98915 5 TCCGGGC 15 0.0022197624 69.98915 8 TCTTTAT 50 9.622454E-10 56.021717 1 CCGTGAT 25 2.3812968E-4 55.991318 27 ATCTCGT 2865 0.0 53.865997 37 AACTCGT 65 3.6379788E-12 53.837807 37 CAACTCG 65 3.6379788E-12 53.837807 36 TCTCGTA 2855 0.0 53.809525 38 CATCTCG 2860 0.0 53.715443 36 CTCGTAT 2995 0.0 53.631084 39 GCATCTC 2865 0.0 53.621704 35 TAGCATC 2860 0.0 53.593086 33 AGCATCT 2860 0.0 53.593086 34 CCGTCTT 2995 0.0 53.51424 47 CGTATGC 3030 0.0 53.473557 41 TCTTCTG 3020 0.0 53.44787 50 CGTCTTC 2995 0.0 53.426384 48 >>END_MODULE