##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779816_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 66115 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.66559782197686 23.0 12.0 34.0 12.0 34.0 2 24.122952431369583 23.0 12.0 34.0 12.0 34.0 3 23.951085230280572 23.0 11.0 34.0 11.0 34.0 4 24.57918777887015 23.0 12.0 34.0 12.0 34.0 5 23.887453679195342 23.0 11.0 34.0 11.0 34.0 6 25.82450276034183 27.0 12.0 37.0 11.0 38.0 7 26.145625047266126 28.0 12.0 37.0 11.0 38.0 8 26.151629736065946 28.0 11.0 37.0 11.0 38.0 9 26.640611056492475 31.0 12.0 37.0 11.0 38.0 10-11 25.534500491567723 27.0 11.5 37.0 11.0 38.0 12-13 25.77362171973077 27.5 11.0 37.0 11.0 38.0 14-15 24.989344324283444 26.5 11.0 37.0 11.0 38.0 16-17 25.187151175981242 26.5 11.0 37.0 11.0 38.0 18-19 25.355857218482946 26.5 11.0 37.0 11.0 38.0 20-21 25.0225364894502 26.5 11.0 36.5 11.0 38.0 22-23 25.386795734704684 27.0 11.0 37.0 11.0 38.0 24-25 25.695825455645465 27.0 11.0 37.0 11.0 38.0 26-27 24.818392195417076 26.0 11.0 37.0 11.0 38.0 28-29 25.19884292520608 26.0 11.0 37.0 11.0 38.0 30-31 25.333721545791423 26.0 11.0 37.5 11.0 38.0 32-33 25.600453754821146 27.0 11.0 38.0 11.0 38.0 34-35 25.629410874990548 27.0 11.0 37.5 11.0 38.0 36-37 25.277629887317552 26.0 11.0 37.0 11.0 38.0 38-39 25.156666414580656 26.0 11.0 37.0 11.0 38.0 40-41 25.13909854042199 26.0 11.0 37.0 11.0 38.0 42-43 25.412750510474176 26.5 11.0 37.0 11.0 38.0 44-45 25.47862814792407 27.0 11.0 37.0 11.0 38.0 46-47 25.39694471753762 26.5 11.0 37.0 11.0 38.0 48-49 25.040830371322695 26.0 11.0 37.0 11.0 38.0 50-51 24.645367919534145 25.5 11.0 37.0 11.0 38.0 52-53 25.151002041896696 26.0 11.0 37.0 11.0 38.0 54-55 25.14660062013159 26.0 11.0 37.0 11.0 38.0 56-57 25.196997655600093 26.0 11.0 37.0 11.0 38.0 58-59 25.137646524994327 26.0 11.0 37.0 11.0 38.0 60-61 25.2978068516978 26.0 11.0 37.0 11.0 38.0 62-63 25.138349844967102 26.0 11.0 37.0 11.0 38.0 64-65 25.093012175754367 26.0 11.0 37.0 11.0 38.0 66-67 25.36090902215836 26.0 11.0 37.0 11.0 38.0 68-69 25.070233683732887 25.0 11.0 37.0 11.0 38.0 70-71 25.118331694774255 25.0 11.0 37.0 11.0 38.0 72-73 24.953762383725326 25.0 11.0 37.0 11.0 38.0 74-75 25.05787642743704 25.0 11.0 37.0 11.0 38.0 76 24.540210239733796 25.0 11.0 36.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 60.0 13 568.0 14 1944.0 15 3471.0 16 4761.0 17 5593.0 18 5838.0 19 5131.0 20 3990.0 21 2937.0 22 2000.0 23 1416.0 24 1052.0 25 863.0 26 812.0 27 770.0 28 754.0 29 806.0 30 973.0 31 1103.0 32 1307.0 33 1547.0 34 2056.0 35 2898.0 36 4882.0 37 8581.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.32574038781499 20.913876032307833 15.924010043258614 36.83637353661857 2 14.007623196297306 23.41864052999365 37.619868711619326 24.953867562089723 3 12.53724570823565 22.232473720033276 34.686531044392346 30.543749527338726 4 10.449973530968766 38.637223020494595 22.41700068063223 28.49580276790441 5 10.654163200484005 40.313090826590035 28.87846933373667 20.15427663918929 6 23.42655756054029 42.208037753543174 13.665996097590488 20.699408588326047 7 17.89290576312207 29.86235062774164 21.107245499924367 31.13749810921192 8 14.838231512713081 47.82115468969794 14.24681983876091 23.09379395882807 9 18.22293485002042 23.117881075193996 15.897986658397494 42.761197416388086 10-11 16.234959577090912 34.6139593275201 21.751987113070705 27.399093982318284 12-13 15.663616425924525 26.017545186417607 25.831505709748164 32.487332677909706 14-15 25.551320446501496 28.843361466557766 18.86816710530296 26.737150981637775 16-17 26.87307625407437 26.40116767123702 18.008908787028563 28.71684728766005 18-19 18.385328039326904 26.066175080355453 23.246738513896766 32.30175836642088 20-21 25.457157982303563 25.22271799137866 19.628677304696364 29.691446721621418 22-23 26.286811973439416 24.458881006761153 18.81702539591306 30.437281623886374 24-25 18.229119399824544 32.57630758992044 17.70578092385879 31.488792086396224 26-27 23.627013537018833 32.37994403690539 19.34356802541027 24.649474400665508 28-29 18.830309401541335 30.913683701020243 23.179779614741765 27.076227282696657 30-31 20.594418815699918 28.76049308023898 23.167964909627166 27.47712319443394 32-33 17.371247069500114 31.11245556984043 22.684716025107768 28.831581335551693 34-35 16.72452259406315 33.56173189638873 22.10550198525241 27.608243524295705 36-37 22.91884123742531 26.569850994629757 22.879509870660314 27.63179789728462 38-39 23.354258054757224 24.343518378460143 25.633035849342008 26.66918771744063 40-41 19.261892157604173 30.209483475761928 22.869999243741965 27.658625122891934 42-43 14.684373322039795 29.538149725098123 25.16618896006171 30.611287992800367 44-45 15.024919267623101 25.045565580403395 28.774002283951084 31.155512868022416 46-47 17.940980730253802 27.575097558762142 24.933448286293373 29.550473424690686 48-49 19.084171519322393 28.65461695530515 23.926491718974514 28.334719806397946 50-51 25.605015579151164 27.988020691532807 19.522340200260157 26.884623529055872 52-53 13.503456412893858 31.79067903008668 23.472598284651106 31.23326627236836 54-55 16.682422876504088 27.477821559032844 22.64053908926586 33.199216475197204 56-57 18.498377667017103 29.33813352292065 20.54123146040222 31.62225734966003 58-59 16.692885991317368 30.200124037574312 22.05675475351314 31.050235217595183 60-61 14.680453544927119 27.677889306596676 22.493438121676512 35.148219026799694 62-63 16.934526285537093 28.823711815823504 21.88079049470205 32.36097140393735 64-65 17.133478053687725 27.718234008274777 21.61577502288044 33.532512915157064 66-67 14.855798685434646 35.42594791658788 18.0885100332045 31.629743364772978 68-69 15.84209332224155 37.183695076760195 17.005974438478408 29.968237162519852 70-71 14.48309763291235 35.84360583831203 18.236406261816533 31.43689026695909 72-73 14.018635043562439 35.12524201355276 20.057629477250728 30.798493465634074 74-75 14.156601447576406 32.9455986567943 19.787325765196147 33.11047413043314 76 12.509075508228463 32.05772023233301 18.492860600193612 36.94034365924492 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.0 10 1.5 11 1.5 12 0.0 13 1.0 14 2.0 15 9.0 16 13.5 17 11.0 18 22.0 19 36.5 20 66.0 21 92.0 22 98.5 23 143.5 24 200.0 25 218.0 26 269.0 27 330.5 28 427.5 29 514.0 30 565.0 31 715.5 32 929.5 33 1044.0 34 1149.5 35 1382.5 36 1615.0 37 1720.0 38 1919.0 39 2230.0 40 2531.0 41 2870.5 42 3021.0 43 3164.0 44 3412.0 45 3609.0 46 3701.0 47 3760.5 48 3750.0 49 3643.0 50 3606.0 51 3460.5 52 3267.5 53 3061.0 54 2902.0 55 2775.5 56 2488.5 57 2122.0 58 1916.0 59 1804.0 60 1490.0 61 1240.0 62 1192.0 63 1069.5 64 836.0 65 671.5 66 551.5 67 485.0 68 457.0 69 369.5 70 291.5 71 273.0 72 253.0 73 211.0 74 168.5 75 148.0 76 129.0 77 107.0 78 85.0 79 66.0 80 59.5 81 51.5 82 41.5 83 33.0 84 41.0 85 40.5 86 24.5 87 17.0 88 17.5 89 15.0 90 9.5 91 6.0 92 5.0 93 5.5 94 6.0 95 4.5 96 3.0 97 5.0 98 4.0 99 3.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.001512516070483249 2 0.001512516070483249 3 0.0 4 0.0 5 0.0 6 0.003025032140966498 7 0.007562580352416245 8 0.003025032140966498 9 0.009075096422899493 10-11 0.002268774105724873 12-13 0.0 14-15 0.001512516070483249 16-17 7.562580352416245E-4 18-19 0.0037812901762081224 20-21 0.0 22-23 0.003025032140966498 24-25 0.001512516070483249 26-27 0.0 28-29 0.005293806246691371 30-31 0.0 32-33 0.0 34-35 0.0037812901762081224 36-37 0.01512516070483249 38-39 0.007562580352416245 40-41 0.0 42-43 7.562580352416245E-4 44-45 0.002268774105724873 46-47 0.001512516070483249 48-49 0.0 50-51 0.001512516070483249 52-53 0.009075096422899493 54-55 0.005293806246691371 56-57 0.009831354458141118 58-59 0.009075096422899493 60-61 0.02041896695152386 62-63 0.006806322317174619 64-65 0.01588141874007411 66-67 0.014368902669590865 68-69 0.0 70-71 0.0 72-73 0.004537548211449746 74-75 0.006806322317174619 76 0.004537548211449746 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 66115.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.15548665204568 #Duplication Level Percentage of deduplicated Percentage of total 1 92.96547937684441 81.95417076306435 2 3.529270468739277 6.222491113968085 3 1.871868780454327 4.950465098691673 4 0.9059089973234506 3.1944339408606215 5 0.4323656578134651 1.9057702488088937 6 0.17500514721021207 0.9256598351357482 7 0.0772081531809759 0.4764425622022234 8 0.022304577585615264 0.15730167133025788 9 0.006862946949420081 0.05445057853739695 >10 0.013725893898840161 0.15881418740074113 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0015125160704832488 0.0 6 0.0 0.0 0.0 0.0015125160704832488 0.0 7 0.0 0.0 0.0 0.0015125160704832488 0.0 8 0.0 0.0 0.0 0.0015125160704832488 0.0 9 0.0 0.0 0.0 0.006050064281932995 0.0 10 0.0 0.0 0.0 0.009075096422899493 0.0 11 0.0 0.0 0.0 0.009075096422899493 0.0 12 0.0 0.0 0.0 0.009075096422899493 0.0 13 0.0 0.0 0.0 0.009075096422899493 0.0 14 0.0 0.0 0.0 0.009075096422899493 0.0 15 0.0 0.0 0.0 0.009075096422899493 0.0 16 0.0 0.0 0.0 0.009075096422899493 0.0 17 0.0 0.0 0.0 0.01361264463434924 0.0 18 0.0 0.0 0.0 0.01361264463434924 0.0 19 0.0 0.0 0.0 0.01512516070483249 0.0 20 0.0 0.0 0.0 0.018150192845798985 0.0 21 0.0 0.0 0.0 0.02722528926869848 0.0 22 0.0 0.0 0.0 0.03932541783256447 0.0 23 0.0 0.0 0.0 0.04537548211449747 0.0 24 0.0 0.0 0.0 0.05445057853739696 0.0 25 0.0 0.0 0.0 0.06050064281932996 0.0 26 0.0 0.0 0.0 0.06050064281932996 0.0 27 0.0 0.0 0.0 0.08621341601754519 0.0 28 0.0 0.0 0.0 0.11646373742721017 0.0 29 0.0 0.0 0.0 0.15578915525977463 0.0 30 0.0 0.0 0.0 0.18755199273992287 0.0 31 0.0 0.0 0.0 0.2193148302200711 0.0 32 0.0 0.0 0.0 0.25712773198215233 0.0 33 0.0 0.0 0.0 0.3312410194358315 0.0 34 0.0 0.0 0.0 0.3872041140437117 0.0 35 0.0 0.0 0.0 0.4567798532859412 0.0 36 0.0 0.0 0.0 0.6428193299553808 0.0 37 0.0 0.0015125160704832488 0.0 0.9044846101489828 0.0 38 0.0 0.0015125160704832488 0.0 1.210012856386599 0.0 39 0.0 0.0015125160704832488 0.0 1.5578915525977464 0.0 40 0.0 0.0015125160704832488 0.0 1.9435831505709749 0.0 41 0.0 0.0015125160704832488 0.0 2.321712168191787 0.0 42 0.0 0.0015125160704832488 0.0 2.754291764349996 0.0 43 0.0 0.0015125160704832488 0.0 3.1263707176888755 0.0 44 0.0 0.0015125160704832488 0.0 3.5453376692127354 0.0 45 0.0 0.0015125160704832488 0.0 3.9416168796793465 0.0 46 0.0 0.0015125160704832488 0.0 4.324283445511608 0.0 47 0.0 0.0015125160704832488 0.0 4.669137109581789 0.0 48 0.0 0.0015125160704832488 0.0 5.02306587007487 0.0 49 0.0 0.0015125160704832488 0.0 5.314981471678137 0.0 50 0.0 0.0015125160704832488 0.0 5.632609846479619 0.0 51 0.0 0.0015125160704832488 0.0 5.953263253422068 0.0 52 0.0 0.0015125160704832488 0.0 6.276941692505483 0.0 53 0.0 0.0015125160704832488 0.0 6.541632004840052 0.0 54 0.0 0.0015125160704832488 0.0 6.883460636769266 0.0 55 0.0 0.0015125160704832488 0.0 7.184451334795432 0.0 56 0.0 0.0015125160704832488 0.0 7.471829388187249 0.0 57 0.0 0.0015125160704832488 0.0 7.671481509491039 0.0 58 0.0 0.0015125160704832488 0.0 7.889283823640626 0.0 59 0.0 0.0015125160704832488 0.0 8.11918626635408 0.0 60 0.0 0.0015125160704832488 0.0 8.36572638584285 0.0 61 0.0 0.0015125160704832488 0.0 8.612266505331618 0.0 62 0.0 0.0015125160704832488 0.0 8.777130757014293 0.0 63 0.0 0.0015125160704832488 0.0 9.002495651516297 0.0 64 0.0 0.0015125160704832488 0.0 9.174922483551388 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACGTG 30 1.0055555E-7 70.038605 32 CTTACGT 25 2.802246E-6 70.038605 31 CCTTACG 30 1.0108488E-7 69.98563 30 TCGGGGG 15 0.0022174192 69.98563 45 CATCTCG 15 0.0022174192 69.98563 41 TGGCCGC 20 7.881563E-5 69.98563 49 GTTACTC 15 0.0022174192 69.98563 26 TCTCGCT 20 7.881563E-5 69.98563 43 ACGAGGG 15 0.0022174192 69.98563 24 AGTGTAG 65 0.0 64.651024 35 TTAGATC 40 1.0482836E-8 61.237423 38 TAGTGTA 35 2.9217517E-7 60.033092 34 TGATACA 35 2.9371222E-7 59.987682 2 TACGTGT 30 8.266283E-6 58.3655 33 ATCTCGC 30 8.30351E-6 58.321354 42 GGCGGTC 30 8.30351E-6 58.321354 47 CAGTGTA 25 2.368058E-4 56.030884 34 GCGGTCG 25 2.3769416E-4 55.988503 48 CGGTGGC 25 2.3769416E-4 55.988503 46 CGGTCGC 25 2.3769416E-4 55.988503 49 >>END_MODULE