##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779815_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 183392 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.863794494852556 33.0 23.0 34.0 12.0 34.0 2 28.649090472866863 34.0 23.0 34.0 12.0 34.0 3 28.125212659221777 34.0 23.0 34.0 11.0 34.0 4 28.696704327342523 34.0 23.0 34.0 12.0 34.0 5 29.237158654685047 34.0 27.0 34.0 11.0 34.0 6 31.298655339382307 37.0 27.0 38.0 12.0 38.0 7 31.615555749432907 37.0 27.0 38.0 12.0 38.0 8 30.880163802128774 37.0 26.0 38.0 11.0 38.0 9 32.00670149188623 37.0 28.0 38.0 12.0 38.0 10-11 30.529886799860407 36.5 25.0 38.0 11.0 38.0 12-13 31.296179767928805 37.0 27.0 38.0 11.0 38.0 14-15 30.139174555051476 35.5 24.5 38.0 11.0 38.0 16-17 30.705011668993194 36.5 25.0 38.0 11.0 38.0 18-19 31.55465887279707 37.0 27.0 38.0 11.0 38.0 20-21 30.30451709998255 36.0 24.5 38.0 11.0 38.0 22-23 31.17090440150061 37.0 26.0 38.0 11.0 38.0 24-25 31.48845642121794 37.0 27.0 38.0 11.0 38.0 26-27 30.393427739487002 37.0 24.5 38.0 11.0 38.0 28-29 31.548028267318095 37.0 27.0 38.0 11.0 38.0 30-31 31.993843788169606 37.0 31.0 38.0 11.0 38.0 32-33 32.11543578782063 37.5 31.0 38.0 11.0 38.0 34-35 32.02855086372361 37.0 29.0 38.0 11.0 38.0 36-37 31.50848183126854 37.0 26.5 38.0 11.0 38.0 38-39 31.418690564473913 37.0 26.5 38.0 11.0 38.0 40-41 31.38484775780841 37.0 26.5 38.0 11.0 38.0 42-43 31.85268714011516 37.0 29.0 38.0 11.0 38.0 44-45 31.87406211830396 37.0 27.0 38.0 11.0 38.0 46-47 31.7700908436573 37.0 27.0 38.0 11.0 38.0 48-49 31.438323372884312 37.0 26.5 38.0 11.0 38.0 50-51 30.782566851334845 37.0 25.5 38.0 11.0 38.0 52-53 31.37562979846449 37.0 26.5 38.0 11.0 38.0 54-55 31.532266947304137 37.0 27.0 38.0 11.0 38.0 56-57 31.599186442156693 37.0 27.0 38.0 11.0 38.0 58-59 31.856490468504624 37.0 28.5 38.0 11.0 38.0 60-61 31.735301976094924 37.0 27.0 38.0 11.0 38.0 62-63 31.73727588989705 37.0 27.0 38.0 11.0 38.0 64-65 31.73681240184959 37.0 28.5 38.0 11.0 38.0 66-67 31.654764111847847 37.0 27.0 38.0 11.0 38.0 68-69 31.011960718024778 37.0 25.5 38.0 11.0 38.0 70-71 31.031498102425406 37.0 25.5 38.0 11.0 38.0 72-73 31.220732093002965 37.0 26.5 38.0 11.0 38.0 74-75 31.32468428284767 37.0 27.0 38.0 11.0 38.0 76 30.30605478974001 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 50.0 13 514.0 14 1868.0 15 3413.0 16 4719.0 17 5536.0 18 5856.0 19 5230.0 20 4379.0 21 3372.0 22 2779.0 23 2462.0 24 2432.0 25 2381.0 26 2589.0 27 2888.0 28 3274.0 29 3907.0 30 4595.0 31 5667.0 32 6916.0 33 8736.0 34 11633.0 35 16630.0 36 26831.0 37 44735.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 37.45964927586808 18.75981504100506 9.666724829872622 34.113810853254236 2 19.530841039958123 24.143365032280578 30.43207991624498 25.893714011516316 3 16.910770371662885 21.048900715407434 30.630561856569532 31.409767056360145 4 12.848979235735476 22.991733554353516 31.649145000872448 32.51014220903856 5 13.050187576339209 32.757699354388414 35.533174838597105 18.658938230675275 6 25.757146128930238 38.200298823247145 18.91911051007165 17.123444537750974 7 28.156594575139877 28.123875274024147 19.43526486274253 24.284265288093447 8 22.535948567782885 36.81504141514939 19.531918838303696 21.117091178764035 9 22.937230735671047 18.001854174619623 19.403937394339312 39.65697769537002 10-11 22.46672973997257 27.096619398040726 24.63703311893862 25.799617743048074 12-13 22.174904030710174 22.855958820450184 26.311943814343046 28.6571933344966 14-15 24.79020235453212 25.202981607603427 22.226281551439275 27.78053448642518 16-17 25.555367736869655 26.119732594660615 22.480260861978714 25.844638806491016 18-19 21.50567244589978 25.888492337222207 25.546591488468344 27.059243728409673 20-21 24.351116733554353 25.092152329436402 24.281866166463097 26.274864770546152 22-23 25.652371877189683 24.706020279352302 23.351791415492247 26.289816427965768 24-25 21.545810476263185 28.781095612533125 22.942863686431895 26.730230224771795 26-27 23.34241227101583 28.47514743049705 24.124346002949974 24.058094295537146 28-29 21.840167957247246 27.91716653942633 25.469516850256298 24.77314865307013 30-31 22.62591232418078 26.651725952402373 25.370041686773924 25.352320036642915 32-33 21.088160879427676 28.214153289129296 25.019357441982205 25.678328389460823 34-35 21.129921012953655 28.727891397582674 25.113900029718977 25.02828755974469 36-37 23.885904393117176 25.871124321671076 24.990319325897847 25.252651959313898 38-39 23.733864854695074 25.516570051207104 26.440642842730387 24.30892225136743 40-41 21.893658903653943 27.265242023872492 25.72618067407888 25.114918398394686 42-43 20.128469732454693 26.8265086059998 26.595306710580484 26.44971495096502 44-45 19.775440816003794 25.202105992152973 27.870314072030165 27.152139119813068 46-47 20.70714231184496 25.732607723599404 27.10948491160721 26.450765052948427 48-49 20.951682470786462 26.068345774874444 27.17990522980953 25.80006652452956 50-51 23.615231094728117 25.777586319715574 25.269101576984315 25.33808100857199 52-53 18.63689039769861 27.38762321567344 26.82563704036975 27.149849346258197 54-55 19.520980288971476 26.058421427188623 26.478599805316446 27.941998478523463 56-57 19.977858430293594 26.867649585118247 25.81619770349384 27.338294281094317 58-59 19.256191135809605 27.139016289735885 26.087027654921553 27.51776491953296 60-61 18.412655990924165 26.05348416092155 26.47209616895017 29.061763679204116 62-63 19.46927991231012 26.552909771586407 25.99803134040633 27.979778975697144 64-65 19.935534363947237 26.18330165499977 25.455745322559974 28.42541865849302 66-67 19.00776639724249 28.811752129759917 23.93184768262487 28.248633790372722 68-69 19.257267960990347 29.75753924003697 23.222576960093352 27.762615838879327 70-71 19.309184697260513 28.721263741057406 23.641434740882914 28.328116820799167 72-73 19.141539862530777 28.34996032968621 24.330853143497478 28.17764666428554 74-75 18.794427766280297 27.62967386236288 24.09944730290909 29.47645106844773 76 18.322009313688067 26.925719520574088 23.60812711984557 31.14414404589227 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 0.5 14 1.5 15 4.0 16 13.5 17 21.0 18 34.5 19 52.0 20 83.0 21 110.0 22 130.0 23 190.5 24 266.0 25 301.0 26 418.0 27 602.0 28 840.5 29 1012.0 30 1190.0 31 1577.0 32 2194.0 33 2602.0 34 2896.5 35 3564.0 36 4370.5 37 4804.0 38 5385.0 39 6754.5 40 8176.5 41 9220.0 42 9630.0 43 9995.5 44 10751.0 45 11079.5 46 11018.0 47 11308.5 48 11370.0 49 10732.0 50 10323.0 51 9818.5 52 8670.5 53 7759.0 54 7491.0 55 6949.5 56 6034.5 57 5143.5 58 4626.0 59 4187.0 60 3405.0 61 2799.5 62 2537.0 63 2322.0 64 1974.0 65 1716.0 66 1464.0 67 1337.0 68 1239.5 69 1048.0 70 891.0 71 828.0 72 778.0 73 716.0 74 609.0 75 514.0 76 499.0 77 450.0 78 361.5 79 307.0 80 285.5 81 245.0 82 198.0 83 170.0 84 153.5 85 129.0 86 99.0 87 77.0 88 71.0 89 51.5 90 34.5 91 22.0 92 13.0 93 14.5 94 12.0 95 7.5 96 7.0 97 8.5 98 10.0 99 9.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0032716803350200663 7 0.007633920781713488 8 0.0027264002791833886 9 0.01199616122840691 10-11 0.004089600418775083 12-13 0.0 14-15 5.452800558366777E-4 16-17 0.0 18-19 0.0029990403071017274 20-21 0.0 22-23 0.001908480195428372 24-25 0.0032716803350200663 26-27 2.7264002791833886E-4 28-29 0.0065433606700401326 30-31 2.7264002791833886E-4 32-33 0.0 34-35 0.004089600418775083 36-37 0.020175362065957075 38-39 0.010360321060896877 40-41 5.452800558366777E-4 42-43 0.0013632001395916943 44-45 0.005725440586285116 46-47 0.0032716803350200663 48-49 5.452800558366777E-4 50-51 0.002181120223346711 52-53 0.013359361367998606 54-55 0.00954240097714186 56-57 0.014449921479671958 58-59 0.013632001395916943 60-61 0.02617344268016053 62-63 0.010087681032978538 64-65 0.020993282149712092 66-67 0.020720642121793753 68-69 8.179200837550166E-4 70-71 0.0 72-73 0.0029990403071017274 74-75 0.010087681032978538 76 0.0032716803350200663 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 183392.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.54817392906351 #Duplication Level Percentage of deduplicated Percentage of total 1 79.33677776900826 51.210441304054044 2 8.539437908585432 11.024102467596219 3 4.921211645310821 9.529656756697669 4 2.8803085937813995 7.436746403231124 5 1.6799548171308138 5.421900786456393 6 0.8835596832982715 3.421929846854706 7 0.47697003894364165 2.155128152288046 8 0.3328690295738146 1.7188870413223332 9 0.21164246565082956 1.2295021215245037 >10 0.737268048716735 6.851705119974973 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002181120223346711 0.0 2 0.0 0.0 0.0 0.002181120223346711 0.0 3 0.0 0.0 0.0 0.002181120223346711 0.0 4 0.0 0.0 0.0 0.004362240446693422 0.0 5 0.0 0.0 0.0 0.004907520502530099 0.0 6 0.0 0.0 0.0 0.005452800558366777 0.0 7 0.0 0.0 0.0 0.005998080614203455 0.0 8 0.0 0.0 0.0 0.005998080614203455 0.0 9 0.0 0.0 0.0 0.005998080614203455 0.0 10 0.0 0.0 0.0 0.00708864072587681 0.0 11 0.0 0.0 0.0 0.007633920781713488 0.0 12 0.0 0.0 0.0 0.008179200837550166 0.0 13 0.0 0.0 0.0 0.008179200837550166 0.0 14 0.0 0.0 0.0 0.009815041005060199 0.0 15 0.0 0.0 0.0 0.009815041005060199 0.0 16 0.0 0.0 0.0 0.009815041005060199 0.0 17 0.0 0.0 0.0 0.009815041005060199 0.0 18 0.0 0.0 0.0 0.011450881172570232 0.0 19 0.0 0.0 0.0 0.015267841563426976 0.0 20 0.0 0.0 0.0 0.01635840167510033 0.0 21 0.0 0.0 0.0 0.024537602512650497 0.0 22 0.0 0.0 0.0 0.034352643517710696 0.0 23 0.0 0.0 0.0 0.034352643517710696 0.0 24 0.0 0.0 0.0 0.03980544407607747 0.0 25 0.0 0.0 0.0 0.04253184435526086 0.0 26 0.0 0.0 0.0 0.04525824463444425 0.0 27 0.0 0.0 0.0 0.06488832664456465 0.0 28 0.0 0.0 0.0 0.0856089687663584 0.0 29 0.0 0.0 0.0 0.10251265049729541 0.0 30 0.0 0.0 0.0 0.1346841737916594 0.0 31 0.0 0.0 0.0 0.17776129820275693 0.0 32 0.0 0.0 0.0 0.2153856220554877 0.0 33 0.0 0.0 0.0 0.26064386668993195 0.0 34 0.0 0.0 0.0 0.3162624323852731 0.0 35 0.0 0.0 0.0 0.4056883615424882 0.0 36 0.0 0.0 0.0 0.5730893386843483 0.0 37 0.0 0.0 0.0 0.8042880823590997 0.0 38 0.0 0.0 0.0 1.1041921130692725 0.0 39 0.0 0.0 0.0 1.4793447914849067 0.0 40 0.0 0.0 0.0 1.947740359448613 0.0 41 0.0 0.0 0.0 2.5137410574070844 0.0 42 0.0 0.0 0.0 3.089011516314779 0.0 43 0.0 0.0 0.0 3.7346231024254055 0.0 44 0.0 0.0 0.0 4.403681730937009 0.0 45 0.0 0.0 0.0 5.085281800732856 0.0 46 0.0 0.0 0.0 5.795781713488047 0.0 47 0.0 0.0 0.0 6.512279706857442 0.0 48 0.0 0.0 0.0 7.172068574419822 0.0 49 0.0 0.0 0.0 7.809500959692898 0.0 50 0.0 0.0 0.0 8.394041179549816 0.0 51 0.0 0.0 0.0 8.978581399406735 0.0 52 0.0 0.0 0.0 9.715254754842087 0.0 53 0.0 0.0 0.0 10.442658349328214 0.0 54 0.0 0.0 0.0 11.18860146571279 0.0 55 0.0 0.0 0.0 11.78132088640726 0.0 56 0.0 0.0 0.0 12.395851509335195 0.0 57 0.0 0.0 0.0 12.982027569359623 0.0 58 0.0 0.0 0.0 13.525126504972954 0.0 59 0.0 0.0 0.0 14.016969115337638 0.0 60 0.0 0.0 0.0 14.50390420519979 0.0 61 0.0 0.0 0.0 15.029008898970512 0.0 62 0.0 0.0 0.0 15.48540830570581 0.0 63 0.0 0.0 0.0 16.06176932472518 0.0 64 0.0 0.0 0.0 16.56179113592741 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATATGC 25 2.8292434E-6 70.00928 26 CGATACT 35 2.9593684E-7 60.007954 25 ACCGGAT 20 0.0069466205 52.492634 54 GTTCTAT 20 0.0069466205 52.492634 1 CATCTCG 20 0.0069466205 52.492634 41 TACGGTC 20 0.0069466205 52.492634 10 TGTGCGT 20 0.0069466205 52.492634 8 CGCGTGT 20 0.0069466205 52.492634 6 CGAATAG 50 6.156915E-8 49.006496 25 CGGTGGT 125 0.0 47.606308 46 GACGAAT 60 4.8967195E-9 46.672848 23 CGGTGTA 30 5.8704696E-4 46.660122 34 TAGATCA 45 1.6796148E-6 46.660122 39 TCGGTGG 170 0.0 45.287766 45 TGGTCGC 110 0.0 44.551357 49 CTTCCGA 40 4.5834313E-5 43.743862 18 TCGGCGG 40 4.5834313E-5 43.743862 45 GCCGTAT 65 9.958967E-9 43.07088 54 CTCGGTG 155 0.0 42.89721 44 GTAGATC 265 0.0 42.258224 38 >>END_MODULE