##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779814_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 482530 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.13626717509792 34.0 31.0 34.0 12.0 34.0 2 31.039699086067188 34.0 32.0 34.0 21.0 34.0 3 30.571479493502995 34.0 32.0 34.0 21.0 34.0 4 30.724006797504817 34.0 32.0 34.0 21.0 34.0 5 31.33052245456241 34.0 34.0 34.0 23.0 34.0 6 34.007301100449716 38.0 34.0 38.0 22.0 38.0 7 34.23117111889416 38.0 35.0 38.0 23.0 38.0 8 33.367034174040995 38.0 34.0 38.0 21.0 38.0 9 34.295898700598926 38.0 35.0 38.0 23.0 38.0 10-11 32.88008517605123 37.0 31.0 38.0 17.0 38.0 12-13 33.88382380370132 38.0 34.0 38.0 21.5 38.0 14-15 32.58761631401157 37.0 32.5 38.0 16.0 38.0 16-17 33.31597724493814 37.5 32.5 38.0 17.0 38.0 18-19 34.27777236648499 38.0 35.0 38.0 23.0 38.0 20-21 32.83357615070565 37.0 30.5 38.0 17.0 38.0 22-23 33.83656974695874 38.0 35.0 38.0 22.0 38.0 24-25 34.135106625494785 38.0 35.0 38.0 22.5 38.0 26-27 32.98533044577539 38.0 33.0 38.0 16.0 38.0 28-29 34.31587466064286 38.0 35.0 38.0 23.5 38.0 30-31 34.74594222120905 38.0 36.0 38.0 25.0 38.0 32-33 34.84360972374775 38.0 36.5 38.0 26.0 38.0 34-35 34.75167865210453 38.0 36.5 38.0 25.5 38.0 36-37 34.23463618842352 38.0 35.5 38.0 22.5 38.0 38-39 34.173953951049675 38.0 35.0 38.0 22.5 38.0 40-41 34.186554203883695 38.0 35.0 38.0 22.5 38.0 42-43 34.57164321389344 38.0 36.0 38.0 24.5 38.0 44-45 34.629313203324145 38.0 36.0 38.0 24.5 38.0 46-47 34.53756968478643 38.0 36.0 38.0 24.0 38.0 48-49 34.26793981721344 38.0 35.0 38.0 23.0 38.0 50-51 33.601082834227924 38.0 34.5 38.0 17.0 38.0 52-53 34.165460178641744 38.0 34.5 38.0 23.0 38.0 54-55 34.32113236482705 38.0 35.5 38.0 23.5 38.0 56-57 34.386638136488926 38.0 36.0 38.0 23.5 38.0 58-59 34.64693386939672 38.0 36.0 38.0 24.0 38.0 60-61 34.495626178683196 38.0 36.0 38.0 24.0 38.0 62-63 34.53277309182849 38.0 36.0 38.0 24.0 38.0 64-65 34.52788531283029 38.0 36.0 38.0 23.5 38.0 66-67 34.3300748140012 38.0 36.0 38.0 23.0 38.0 68-69 33.69472364412575 38.0 34.0 38.0 21.5 38.0 70-71 33.72400265268481 38.0 34.0 38.0 21.5 38.0 72-73 33.99454541686527 38.0 34.0 38.0 22.5 38.0 74-75 34.06388411083249 38.0 35.0 38.0 22.5 38.0 76 32.98105195531884 37.0 32.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 5.0 12 35.0 13 593.0 14 2141.0 15 3794.0 16 5160.0 17 5879.0 18 5998.0 19 5524.0 20 4654.0 21 3830.0 22 3448.0 23 3445.0 24 3707.0 25 4182.0 26 4902.0 27 5873.0 28 7040.0 29 8593.0 30 10632.0 31 13359.0 32 16941.0 33 22337.0 34 31405.0 35 46490.0 36 83987.0 37 178576.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.00644519511741 17.19209168341865 10.896110086419498 28.905353035044453 2 23.444759911300853 20.841812944272895 29.323565374173626 26.389861770252626 3 21.01071435972893 20.891965266408306 28.99073632727499 29.106584046587773 4 15.181853977991006 18.18726296810561 30.028392017076662 36.60249103682672 5 17.26068845460386 31.01029987772781 32.21063975296873 19.518371914699603 6 31.1318173905114 35.600477497119265 16.411062016596343 16.85664309577299 7 29.399219464070686 29.31030551991859 18.440627661977786 22.849847354032942 8 25.8771229909951 35.36470368796825 17.59841662953483 21.15975669150182 9 25.406020460612496 17.75836912006102 18.510512178541227 38.32509824078526 10-11 25.72481676868348 24.51553670999143 23.33786165711781 26.421784864207282 12-13 25.892924681288914 21.915965759606408 24.399751725024068 27.79135783408061 14-15 25.028910239405793 23.54992870880032 22.00525150872074 29.41590954307315 16-17 25.87964171878821 25.06486697089898 22.532671814575796 26.522819495737014 18-19 23.803089243191376 24.772700424651774 24.75093935292935 26.673270979227503 20-21 24.95761921538557 24.351957391250284 24.6121484674528 26.078274925911344 22-23 25.826681574619727 24.5505594109217 23.45173688360916 26.171022130849416 24-25 24.408590451024583 26.156420818113517 22.926970803865185 26.508017926996708 26-27 24.579737236684903 25.949923890032757 23.744444594119894 25.725894279162446 28-29 24.117298381748242 25.553165207587213 24.530151545297784 25.799384865366758 30-31 24.49901819067307 25.316380931656745 24.258410142427113 25.926190735243072 32-33 23.671274324912442 25.860050152322135 24.611526744451123 25.857148778314304 34-35 23.66178939296595 25.982259435037612 24.56083811734472 25.79511305465172 36-37 24.817355597173872 25.052520953969154 24.23809637322991 25.892027075627066 38-39 24.83429227567796 24.357895522264318 25.190890324078296 25.616921877979422 40-41 23.56880620816931 24.847909592342788 25.299077458082525 26.284206741405374 42-43 22.608301893048804 24.248205028304028 26.166122830050455 26.977370248596717 44-45 22.326515470241883 23.46421917194984 27.326235681554877 26.8830296762534 46-47 22.132379990155695 23.86995155565918 27.438563767778035 26.559104686407085 48-49 21.773072941654345 24.39415621221086 27.433037772820107 26.399733073314692 50-51 22.696849965338117 24.695529808701636 26.378055970910957 26.229564255049286 52-53 20.300790840305392 25.599451976997127 26.86742880001824 27.23232838267924 54-55 20.58512633762853 25.036944766279014 26.752156061325206 27.625772834767254 56-57 20.810105802504065 25.268340810706896 26.342636782045183 27.57891660474386 58-59 20.784819702881542 24.774207589112223 26.77672589345396 27.664246814552275 60-61 20.628551942445448 24.650467615198764 26.611932764573393 28.109047677782396 62-63 21.484230478655984 24.70912427935262 25.784641596134854 28.022003645856543 64-65 21.86847983250328 23.950580175063095 25.28920651537373 28.891733477059894 66-67 21.62387652560361 25.572412277792516 24.281764062085433 28.521947134518438 68-69 22.047563931324408 25.92256017507738 23.6379330175668 28.39194287603141 70-71 22.602418926984548 26.403649114662777 23.414081669872008 27.579850288480667 72-73 23.247268416427637 26.792834878052822 22.875665279458822 27.084231426060718 74-75 24.034865368732053 27.16190882815925 22.411704417447606 26.391521385661093 76 23.633281244171055 27.375203624410887 22.611739543135215 26.37977558828284 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 1.0 8 2.0 9 1.5 10 3.5 11 6.5 12 7.0 13 12.5 14 25.5 15 53.5 16 109.0 17 144.0 18 179.5 19 297.0 20 432.5 21 486.0 22 602.0 23 848.0 24 1180.5 25 1383.0 26 1599.0 27 2118.0 28 2792.0 29 3163.0 30 3694.0 31 4713.0 32 5830.5 33 6460.0 34 7300.5 35 8803.0 36 10235.0 37 11005.0 38 12235.0 39 14375.0 40 16353.0 41 18228.5 42 19036.0 43 19762.5 44 21087.5 45 22460.5 46 23235.0 47 23452.0 48 23576.5 49 23409.5 50 23335.0 51 23104.5 52 22316.5 53 21457.5 54 21156.0 55 20388.5 56 18931.5 57 17248.0 58 16254.0 59 15482.5 60 13614.0 61 11856.5 62 11196.0 63 10350.5 64 8832.5 65 7593.0 66 6704.0 67 6382.0 68 5886.5 69 5025.0 70 4341.0 71 4023.0 72 3849.0 73 3452.5 74 3038.5 75 2847.0 76 2529.0 77 2099.5 78 1876.0 79 1764.0 80 1570.0 81 1246.5 82 1036.0 83 955.0 84 852.0 85 645.5 86 444.5 87 347.0 88 308.5 89 205.5 90 129.5 91 107.5 92 97.0 93 73.5 94 47.5 95 36.5 96 28.0 97 22.5 98 18.0 99 21.0 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0029013740078337098 7 0.008496881022941579 8 0.003108615008393261 9 0.00870412202350113 10-11 0.002383271506434833 12-13 1.0362050027977534E-4 14-15 4.144820011191014E-4 16-17 8.289640022382027E-4 18-19 0.0035230970095123616 20-21 0.0 22-23 0.0027977535075539343 24-25 0.0036267175097921375 26-27 9.325845025179782E-4 28-29 0.007046194019024723 30-31 5.181025013988767E-4 32-33 0.0 34-35 0.004144820011191014 36-37 0.0214494435579135 38-39 0.011191014030215737 40-41 9.325845025179782E-4 42-43 3.1086150083932607E-4 44-45 0.004766543012869666 46-47 0.0036267175097921375 48-49 1.0362050027977534E-4 50-51 0.002383271506434833 52-53 0.014196008538329224 54-55 0.010983773029656188 56-57 0.015439454541686526 58-59 0.012952562534971918 60-61 0.02808115557581912 62-63 0.013367044536091019 64-65 0.027459432574140467 66-67 0.020309618054835967 68-69 1.0362050027977534E-4 70-71 4.144820011191014E-4 72-73 0.005388266014548318 74-75 0.009429465525459556 76 0.004973784013429217 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 482530.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.04283569340073 #Duplication Level Percentage of deduplicated Percentage of total 1 72.87894428818566 45.216163659804096 2 11.333198483425894 14.062875427757824 3 7.219116713252208 13.436834162753694 4 4.180315937576693 10.374346194463008 5 2.2243327116942333 6.900195447955092 6 1.0689913773661999 3.9793953830155964 7 0.4977971912459349 2.1619324541575544 8 0.23269358361477882 1.154957582009626 9 0.11081196882439287 0.6187579897170645 >10 0.2534608350878891 2.08262708254226 >50 3.369097260897934E-4 0.01191461582419969 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0012434460033573043 0.0 2 0.0 0.0 0.0 0.002694133007274159 0.0 3 0.0 0.0 0.0 0.002694133007274159 0.0 4 0.0 0.0 0.0 0.004973784013429217 0.0 5 0.0 0.0 0.0 0.006009989016226971 0.0 6 0.0 0.0 0.0 0.007253435019584274 0.0 7 0.0 0.0 0.0 0.007253435019584274 0.0 8 0.0 0.0 0.0 0.007460676020143825 0.0 9 0.0 0.0 0.0 0.009533086025739332 0.0 10 0.0 0.0 0.0 0.010154809027417984 0.0 11 0.0 0.0 0.0 0.012227219033013492 0.0 12 0.0 0.0 0.0 0.014299629038609 0.0 13 0.0 0.0 0.0 0.0147141110397281 0.0 14 0.0 0.0 0.0 0.016786521045323608 0.0 15 0.0 0.0 0.0 0.016993762045883157 0.0 16 0.0 0.0 0.0 0.018444449049800013 0.0 17 0.0 0.0 0.0 0.019480654052597766 0.0 18 0.0 0.0 0.0 0.02072410005595507 0.0 19 0.0 0.0 0.0 0.02341823306322923 0.0 20 0.0 0.0 0.0 0.028599258077218 0.0 21 0.0 0.0 0.0 0.03129339108449215 0.0 22 0.0 0.0 0.0 0.03626717509792137 0.0 23 0.0 0.0 0.0 0.03833958510351688 0.0 24 0.0 0.0 0.0 0.043313369116946096 0.0 25 0.0 0.0 0.0 0.04704370712701801 0.0 26 0.0 0.0 0.0 0.0596854081611506 0.0 27 0.0 0.0 0.0 0.14154560338217312 0.0 28 0.0 0.0 0.0 0.1896255155119889 0.0 29 0.0 0.0 0.0 0.2459950676641867 0.0 30 0.0 0.0 0.0 0.2990487638074317 0.0 31 0.0 0.0 0.0 0.34899384494228336 0.0 32 0.0 0.0 0.0 0.40391271009056434 0.0 33 0.0 0.0 0.0 0.47520361428304975 0.0 34 0.0 0.0 0.0 0.5713634385426812 0.0 35 0.0 0.0 0.0 0.7236855739539511 0.0 36 0.0 0.0 0.0 1.033718110791039 0.0 37 0.0 0.0 0.0 1.5686071332352394 0.0 38 0.0 0.0 0.0 2.225975587010134 0.0 39 0.0 0.0 0.0 2.9554639089797528 0.0 40 0.0 0.0 0.0 3.7769672351978114 0.0 41 0.0 0.0 0.0 4.8278863490352935 0.0 42 0.0 0.0 0.0 5.99175180817773 0.0 43 0.0 0.0 0.0 7.068783288085715 0.0 44 0.0 0.0 0.0 8.073073176797298 0.0 45 0.0 0.0 0.0 9.08254409052287 0.0 46 0.0 0.0 0.0 10.074606760201439 0.0 47 0.0 0.0 0.0 11.009678154726132 0.0 48 0.0 0.0 0.0 11.939361283236275 0.0 49 0.0 0.0 0.0 12.67071477421093 0.0 50 0.0 0.0 0.0 13.479990881395976 0.0 51 0.0 0.0 0.0 14.349159637742732 0.0 52 0.0 0.0 0.0 15.38329223053489 0.0 53 0.0 0.0 0.0 16.437112718380206 0.0 54 0.0 0.0 0.0 17.345242782832155 0.0 55 0.0 0.0 0.0 18.20467121215261 0.0 56 0.0 0.0 0.0 19.0311483223841 0.0 57 0.0 0.0 0.0 19.802706567467308 0.0 58 0.0 0.0 0.0 20.529500756429652 0.0 59 0.0 0.0 0.0 21.142519636084803 0.0 60 0.0 0.0 0.0 21.77916398980374 0.0 61 0.0 0.0 0.0 22.41352869251653 0.0 62 0.0 0.0 0.0 23.101568814374236 0.0 63 0.0 0.0 0.0 23.820280604314757 0.0 64 0.0 0.0 0.0 24.521376909207717 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCGTAA 20 0.006948871 52.5014 39 TCGGTGG 150 0.0 39.6595 45 GACGAGC 145 0.0 36.204105 23 CGACGAG 190 0.0 31.306889 22 TATTCCG 45 0.0043098163 31.10549 5 ACGAATA 80 2.4661676E-6 30.622643 24 GACGACT 60 4.9823016E-4 29.16442 23 TAGATCT 270 0.0 28.519278 39 CTCGGTG 185 0.0 28.376192 44 GCCGTAC 50 0.007194414 28.009457 54 TATCACG 50 0.0072089965 27.997843 44 GTTTACG 50 0.007216296 27.992039 1 CGAATAG 90 6.169521E-6 27.220125 25 GACGAAT 105 6.7675137E-7 26.664612 23 ACGAGCG 80 8.664976E-5 26.247978 24 CTTCCGA 120 7.419112E-8 26.239817 18 GATCTCG 190 0.0 25.787487 41 CTAGTAC 70 0.0012268142 24.995483 3 TCTCGGT 170 1.4006218E-10 24.70398 43 GTAGATC 260 0.0 24.231415 38 >>END_MODULE