SRR1779814_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779814_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	482530
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	25765	5.3395643794168235	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	3289	0.6816156508403622	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	1796	0.37220483700495305	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	751	0.15563799142022258	RNA PCR Primer, Index 48 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	625	0.12952562534971918	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCGAT	15	0.002228343	69.96652	34
CGTCTTC	3820	0.0	53.371006	48
CCGTCTT	3855	0.0	53.14803	47
ATGCCGT	3870	0.0	52.972073	44
CGTATGC	3885	0.0	52.863075	41
TGCCGTC	3885	0.0	52.81133	45
TATGCCG	3885	0.0	52.773018	43
GCCGTCT	3900	0.0	52.70892	46
TCGTATG	3905	0.0	52.592327	40
ACAAACG	20	0.006931424	52.53478	47
TCTCGTA	3810	0.0	52.34259	38
CTCGTAT	3885	0.0	52.322735	39
GTATGCC	3940	0.0	52.036343	42
GTCTTCT	3940	0.0	51.928707	49
ATCTCGT	3840	0.0	51.842552	37
AATCTCG	3835	0.0	51.722324	36
TCTTCTG	3995	0.0	51.126095	50
CGTCAAT	3915	0.0	51.022842	32
CTGCTTG	3990	0.0	50.75114	54
GTCAATC	3915	0.0	50.486702	33