##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779813_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 183635 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.960530399978218 34.0 23.0 34.0 12.0 34.0 2 29.54893674953032 34.0 30.0 34.0 12.0 34.0 3 29.20968225011572 34.0 27.0 34.0 11.0 34.0 4 29.572870095570018 34.0 27.0 34.0 12.0 34.0 5 29.856389032591824 34.0 31.0 34.0 11.0 34.0 6 32.48619816483786 37.0 31.0 38.0 12.0 38.0 7 32.562599722275166 37.0 31.0 38.0 12.0 38.0 8 31.961548724371717 37.0 28.0 38.0 11.0 38.0 9 32.906668118822665 37.0 34.0 38.0 12.0 38.0 10-11 31.57421787785553 37.0 28.5 38.0 11.5 38.0 12-13 32.428224467013365 37.0 31.0 38.0 11.0 38.0 14-15 31.22531107904267 37.0 27.0 38.0 11.0 38.0 16-17 31.841756745718406 37.0 28.5 38.0 11.0 38.0 18-19 32.63551610531761 37.5 32.0 38.0 11.0 38.0 20-21 31.44663598987121 37.0 27.5 38.0 11.0 38.0 22-23 32.3151850137501 37.0 31.0 38.0 11.0 38.0 24-25 32.602711901326 37.5 32.0 38.0 11.0 38.0 26-27 31.543793394505407 37.0 26.5 38.0 11.0 38.0 28-29 32.686511285974895 37.5 32.5 38.0 11.0 38.0 30-31 33.070618346175834 38.0 34.0 38.0 11.0 38.0 32-33 33.18172189397446 38.0 34.0 38.0 11.0 38.0 34-35 33.146276581261745 38.0 34.0 38.0 11.0 38.0 36-37 32.67719116726114 38.0 32.5 38.0 11.0 38.0 38-39 32.59411876820867 38.0 32.5 38.0 11.0 38.0 40-41 32.598772020584306 38.0 32.5 38.0 11.0 38.0 42-43 32.98780733520299 38.0 33.5 38.0 11.0 38.0 44-45 33.05225583358292 38.0 34.0 38.0 11.0 38.0 46-47 32.94973997331664 38.0 34.0 38.0 11.0 38.0 48-49 32.68802515860266 38.0 32.5 38.0 11.0 38.0 50-51 32.06104228496746 37.5 29.5 38.0 11.0 38.0 52-53 32.61301222533831 37.0 32.5 38.0 11.0 38.0 54-55 32.75434421542734 37.5 33.0 38.0 11.0 38.0 56-57 32.792711084488246 38.0 33.5 38.0 11.0 38.0 58-59 33.00926838565633 38.0 34.0 38.0 11.0 38.0 60-61 32.93468293081384 38.0 34.0 38.0 11.0 38.0 62-63 32.917453099899255 38.0 34.0 38.0 11.0 38.0 64-65 32.9256922699921 38.0 34.0 38.0 11.0 38.0 66-67 32.82794401938628 38.0 33.0 38.0 11.0 38.0 68-69 32.22662074223324 37.0 31.0 38.0 11.0 38.0 70-71 32.309840172080484 37.0 31.0 38.0 11.0 38.0 72-73 32.497838102758195 37.0 31.5 38.0 11.0 38.0 74-75 32.49773191385084 37.5 32.0 38.0 11.0 38.0 76 31.610575326054402 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 33.0 13 485.0 14 1823.0 15 3392.0 16 4465.0 17 4861.0 18 4831.0 19 4305.0 20 3243.0 21 2439.0 22 1861.0 23 1569.0 24 1449.0 25 1525.0 26 1630.0 27 1869.0 28 2161.0 29 2795.0 30 3395.0 31 4381.0 32 5612.0 33 7647.0 34 10872.0 35 16453.0 36 29651.0 37 60884.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.739537669834185 23.675225311079043 9.905519100389359 28.679717918697417 2 19.16519182073134 21.2497617556566 30.230620524409836 29.354425899202223 3 20.01198028698233 21.129414327334114 30.794783129577695 28.063822256105865 4 13.33460396983146 21.694666049500366 33.28178179540937 31.688948185258802 5 16.67764859640047 32.50633049255317 33.72614153075394 17.089879380292427 6 26.77137053515512 36.933708727924234 16.375409112939675 19.919511623980963 7 26.219857538066087 28.05454505848781 22.132245627028556 23.59335177641754 8 23.100507547868517 34.358594549850785 17.9667588820877 24.574139020192998 9 24.64804457103645 17.328460872359315 18.773316196212768 39.250178360391466 10-11 22.755306258594167 26.12326585070319 24.648541204340308 26.472886686362333 12-13 22.680378687011427 22.83312776194016 26.326752325951823 28.15974122509659 14-15 24.193710876768797 24.81913801600462 22.96845091744743 28.018700189779157 16-17 25.43728285611597 26.112266791552763 23.108738033261815 25.341712319069455 18-19 22.280279473509374 25.76335150383105 25.57438558848996 26.38198343416961 20-21 23.403490619979852 25.43578293898222 25.19753859558363 25.9631878454543 22-23 25.522442922685258 25.148598423481683 23.873225055477654 25.455733598355412 24-25 22.203252763051488 28.231728734918597 23.706832000479228 25.858186501550684 26-27 23.056397354527608 28.118082386479664 24.970797970969507 23.85472228802322 28-29 22.513921603333014 27.346794287036914 26.00678039947173 24.132503710158346 30-31 22.85327648127122 26.550566478521194 26.024521535985883 24.5716355042217 32-33 21.36804731150005 27.96241436770968 25.942908176045833 24.726630144744437 34-35 21.247403058876703 29.06232386408502 25.548454905121453 24.14181817191682 36-37 23.700005991383303 26.15783482300909 25.17443095475416 24.967728230853446 38-39 23.483519954688045 25.518201028232834 26.86557816312304 24.13270085395608 40-41 21.532312082382603 26.582385327096187 26.433989903665505 25.451312686855704 42-43 20.270921541666098 25.93086735735777 27.180918410412104 26.61729269056403 44-45 19.739794362392715 24.67624057857361 29.103221801071754 26.48074325796192 46-47 20.33147907630227 25.431094338389652 28.311319136422675 25.926107448885404 48-49 20.46924861409107 26.14657416382587 27.802313297101843 25.581863924981214 50-51 22.47087909993411 26.050340084190577 26.05197379527422 25.426807020601096 52-53 18.351864105852783 27.480550177410702 27.067998812723467 27.09958690401305 54-55 18.880296264023528 26.060069709182006 27.383727262825403 27.675906763969067 56-57 19.417015691122888 26.719024873779322 26.725560572309337 27.138398862788453 58-59 19.398302961647804 26.476194625682137 26.69513217946344 27.43037023320662 60-61 18.79430789133247 25.62565534145843 27.00347245863689 28.576564308572205 62-63 19.822128306161517 25.797114078059856 26.202308628628845 28.17844898714978 64-65 20.548504820523995 25.360586088566915 25.289503785609234 28.801405305299856 66-67 19.387527233115467 27.988017429193903 23.97140522875817 28.653050108932458 68-69 20.271627998159378 28.63856540337139 23.48591079514359 27.603895803325646 70-71 20.945353554605603 29.199226726931137 23.201731696027444 26.653688022435812 72-73 21.834420225728717 29.541599161345662 22.293229499938736 26.33075111298689 74-75 22.65963037694798 29.30380487911142 22.03387984391636 26.002684900024235 76 22.03277224433783 29.910527089652618 22.309413987834297 25.74728667817525 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 0.0 11 0.0 12 0.0 13 2.5 14 3.5 15 5.5 16 10.5 17 12.0 18 28.5 19 61.0 20 93.0 21 109.0 22 149.5 23 215.5 24 325.0 25 409.0 26 530.0 27 749.0 28 943.0 29 1039.0 30 1267.5 31 1680.0 32 2291.5 33 2719.0 34 3096.0 35 3838.5 36 4634.0 37 5064.0 38 5588.5 39 6743.0 40 8073.0 41 9056.0 42 9339.0 43 9783.5 44 10531.0 45 11124.5 46 11415.0 47 11470.0 48 11284.0 49 10635.0 50 10227.0 51 9873.5 52 8796.5 53 7580.0 54 7087.0 55 6596.5 56 5691.0 57 4811.0 58 4346.0 59 3979.0 60 3263.0 61 2755.5 62 2597.0 63 2336.5 64 1945.5 65 1688.0 66 1484.5 67 1408.0 68 1343.5 69 1189.5 70 987.0 71 874.0 72 857.5 73 760.5 74 645.5 75 611.0 76 557.0 77 476.5 78 395.5 79 341.0 80 329.5 81 274.5 82 201.0 83 171.0 84 162.0 85 134.0 86 92.0 87 69.0 88 60.0 89 40.5 90 30.0 91 30.5 92 31.0 93 20.0 94 6.5 95 6.0 96 8.0 97 6.5 98 6.5 99 6.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0032673509951806575 7 0.0038119094943774336 8 0.0038119094943774336 9 0.009802052985541971 10-11 0.004084188743975822 12-13 2.7227924959838813E-4 14-15 2.7227924959838813E-4 16-17 5.445584991967763E-4 18-19 0.002178233996787105 20-21 0.0 22-23 0.0013613962479919405 24-25 0.0035396302447790458 26-27 2.7227924959838813E-4 28-29 0.009529773735943584 30-31 2.7227924959838813E-4 32-33 5.445584991967763E-4 34-35 0.002995071745582269 36-37 0.020693222969477496 38-39 0.010346611484738748 40-41 0.002178233996787105 42-43 0.0013613962479919405 44-45 0.005990143491164538 46-47 0.0019059547471887168 48-49 5.445584991967763E-4 50-51 0.002178233996787105 52-53 0.011708007732730688 54-55 0.008168377487951644 56-57 0.015247637977509734 58-59 0.0114357284831323 60-61 0.02586652871184687 62-63 0.010618890734337135 64-65 0.024505132463854933 66-67 0.019059547471887168 68-69 8.168377487951644E-4 70-71 0.0 72-73 0.004084188743975822 74-75 0.008440656737550033 76 0.002178233996787105 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 183635.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.80963460336751 #Duplication Level Percentage of deduplicated Percentage of total 1 76.4641492644581 46.497569770290504 2 9.693867388184303 11.78961067537976 3 5.579881969251761 10.179317510403548 4 3.2348899406458576 7.868499010911352 5 1.8314226197778734 5.5684070156517285 6 0.9976069475379497 3.6398468374538124 7 0.598333105333706 2.5469092254508605 8 0.40518960965278145 1.9711545686453404 9 0.23793638073045506 1.3021941933960037 >10 0.9557272252609683 8.599562413988481 >50 9.955491662690169E-4 0.03692877842860871 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002722792495983881 0.0 2 0.0 0.0 0.0 0.00435646799357421 0.0 3 0.0 0.0 0.0 0.00435646799357421 0.0 4 0.0 0.0 0.0 0.007079260489558091 0.0 5 0.0 0.0 0.0 0.010346611484738748 0.0 6 0.0 0.0 0.0 0.010346611484738748 0.0 7 0.0 0.0 0.0 0.010346611484738748 0.0 8 0.0 0.0 0.0 0.012524845481525854 0.0 9 0.0 0.0 0.0 0.013613962479919405 0.0 10 0.0 0.0 0.0 0.014703079478312958 0.0 11 0.0 0.0 0.0 0.014703079478312958 0.0 12 0.0 0.0 0.0 0.014703079478312958 0.0 13 0.0 0.0 0.0 0.014703079478312958 0.0 14 0.0 0.0 0.0 0.01851498897269039 0.0 15 0.0 0.0 0.0 0.019059547471887168 0.0 16 0.0 0.0 0.0 0.022326898467067823 0.0 17 0.0 0.0 0.0 0.02450513246385493 0.0 18 0.0 0.0 0.0 0.025049690963051707 0.0 19 0.0 0.0 0.0 0.02722792495983881 0.0 20 0.0 0.0 0.0 0.031039834454216243 0.0 21 0.0 0.0 0.0 0.038119094943774336 0.0 22 0.0 0.0 0.0 0.050099381926103415 0.0 23 0.0 0.0 0.0 0.052277615922890514 0.0 24 0.0 0.0 0.0 0.06044599341084216 0.0 25 0.0 0.0 0.0 0.062079668908432487 0.0 26 0.0 0.0 0.0 0.06534701990361315 0.0 27 0.0 0.0 0.0 0.10292155634819071 0.0 28 0.0 0.0 0.0 0.14049609279276826 0.0 29 0.0 0.0 0.0 0.17970430473493615 0.0 30 0.0 0.0 0.0 0.22381354316987503 0.0 31 0.0 0.0 0.0 0.27336836659678165 0.0 32 0.0 0.0 0.0 0.32891333351485286 0.0 33 0.0 0.0 0.0 0.37955727394015304 0.0 34 0.0 0.0 0.0 0.43673591635581455 0.0 35 0.0 0.0 0.0 0.5271326272224793 0.0 36 0.0 0.0 0.0 0.6943120864758897 0.0 37 0.0 0.0 0.0 1.0940180248863234 0.0 38 0.0 0.0 0.0 1.5318430582405316 0.0 39 0.0 0.0 0.0 2.0720450894437334 0.0 40 0.0 0.0 0.0 2.7625452664252457 0.0 41 0.0 0.0 0.0 3.670324284586272 0.0 42 0.0 0.0 0.0 4.550330819288262 0.0 43 0.0 0.0 0.0 5.503852751381817 0.0 44 0.0 0.0 0.0 6.336482696653688 0.0 45 0.0 0.0 0.0 7.144062950962507 0.0 46 0.0 0.0 0.0 7.972880986740001 0.0 47 0.0 0.0 0.0 8.801154464018298 0.0 48 0.0 0.0 0.0 9.578784000871293 0.0 49 0.0 0.0 0.0 10.335175756255616 0.0 50 0.0 0.0 0.0 11.104092357121464 0.0 51 0.0 0.0 0.0 11.971574046341928 0.0 52 0.0 0.0 0.0 12.870095570016609 0.0 53 0.0 0.0 0.0 13.813270890625425 0.0 54 0.0 0.0 0.0 14.665504941868381 0.0 55 0.0 0.0 0.0 15.399569798785635 0.0 56 0.0 0.0 0.0 16.130911863206904 0.0 57 0.0 0.0 0.0 16.75334222778882 0.0 58 0.0 0.0 0.0 17.33275247093419 0.0 59 0.0 0.0 0.0 17.899093310098838 0.0 60 0.0 0.0 0.0 18.51553353118959 0.0 61 0.0 0.0 0.0 19.157568001742586 0.0 62 0.0 0.0 0.0 19.7805429248237 0.0 63 0.0 0.0 0.0 20.438369591853405 0.0 64 0.0 0.0 0.0 21.130503444332508 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGAAG 15 0.002222467 69.99564 23 CAATTTA 25 2.3864614E-4 55.99651 47 GACGAAT 45 2.6882844E-8 54.44105 23 CTCGGTG 65 3.6379788E-12 53.857475 44 CGCGTTA 20 0.006937006 52.511036 50 TCGTCTC 20 0.0069444887 52.496727 7 TAGATCC 40 7.452818E-7 52.496727 39 CGACGGA 20 0.0069519775 52.482426 22 TCGCTGC 20 0.0069519775 52.482426 15 GGTACGG 20 0.0069594723 52.468136 1 ACGAAGG 55 2.2700988E-9 50.905922 24 TCGGTGG 70 7.2759576E-12 49.98327 45 TGGTCGC 65 1.8371793E-10 48.471725 49 ACGATAT 30 5.868227E-4 46.66376 24 TTCCGAC 60 4.9167284E-9 46.65105 19 GTAGATC 140 0.0 44.9972 38 CGTACCA 40 4.566612E-5 43.771126 56 GATCTCG 105 0.0 43.34244 41 ATCTCGG 115 0.0 42.617653 42 TCTCGGT 85 5.638867E-11 41.185127 43 >>END_MODULE