SRR1779813_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779813_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	183635
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	21634	11.780978571623056	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	2820	1.535654967734909	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	1655	0.9012443161706647	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	653	0.35559669997549487	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	464	0.2526751436273042	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT	337	0.18351621422931358	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCGT	303	0.1650012252566232	No Hit
CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	224	0.12198110382007787	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTGCG	15	0.0022181468	70.02998	47
TATACGA	20	7.894139E-5	70.02998	46
TTATACG	20	7.9048055E-5	70.0109	45
ATATCGT	15	0.002225351	69.97277	37
ATCGTAT	20	7.926175E-5	69.97276	39
CGAATGG	25	2.3774778E-4	56.03926	50
CGAATCT	25	2.3903218E-4	55.97821	34
TCTCGTA	3205	0.0	53.052677	38
CGTATCT	3180	0.0	52.919655	34
ATCTCGT	3220	0.0	52.914192	37
GTATCTC	3195	0.0	52.671207	35
ACGTATC	3190	0.0	52.644093	33
ACTATCG	20	0.006923558	52.536804	54
CGAACTG	20	0.0069310283	52.522484	64
GCCGTCC	40	7.427625E-7	52.522484	46
TATCTCG	3205	0.0	52.506866	36
GACGTGC	20	0.006953475	52.479576	26
TAGCGTG	20	0.006953475	52.479576	26
CGCGAAG	20	0.006953475	52.479576	3
GCAATTG	20	0.006953475	52.479576	15